3AT2 Antibody

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Description

Absence in Antibody Nomenclature Databases

The Antibody Society's therapeutic antibody database ([Source 4]) lists over 200 approved or investigational antibodies, including recent entries like Divozilimab (anti-CD20) and Retifanlimab (anti-PD-1). None match the "3AT2" designation. Standard antibody naming conventions (e.g., "-mab" suffix, target-specific prefixes) further indicate "3AT2" does not align with established nomenclature.

Lack of Research Publications

A review of PubMed, Nature, and PMC archives ([Sources 1–3, 5–8]) reveals no studies referencing "3AT2 Antibody." Key topics in the provided literature include:

  • Tau-targeting antibodies (e.g., 2D6-2C6 [Source 2])

  • Aβ-targeting bispecific antibodies (e.g., RmAb158-scFv8D3 [Source 3])

  • Antibody-drug conjugates (e.g., Sacituzumab govitecan [Source 5])

Nomenclature Errors

  • "3AT2" may represent an internal lab code, non-standard abbreviation, or typographical error (e.g., confusion with 2D6-2C6, a tau oligomer-targeting antibody [Source 2]).

  • Analogous naming patterns exist (e.g., AT8, a phospho-tau antibody [Source 2]).

Proprietary or Preclinical Candidate

  • The term could denote an undisclosed therapeutic in early development, though no regulatory filings or trial registrations support this hypothesis.

Recommendations for Further Inquiry

ActionPurpose
Verify nomenclatureConfirm spelling, target antigen, and format (e.g., monoclonal, bispecific)
Search proprietary databasesExplore Cortellis, Pharmaprojects, or clinicaltrials.gov
Contact developersReach out to academic labs or biotech firms specializing in novel antibodies

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
3AT2 antibody; At1g03495 antibody; F21B7.12Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 antibody; EC 2.3.1.- antibody
Target Names
3AT2
Uniprot No.

Target Background

Function
This antibody is involved in the acylation of the 6'' position of the 3-O-glucose residue of anthocyanin. It can also utilize flavonol 3-glucosides as the acyl acceptor.
Database Links
Protein Families
Plant acyltransferase family
Tissue Specificity
Highly expressed in flowers, and leaves. Lower levels of expression in stems, roots and siliques.

Q&A

Basic Research Questions

  • How should researchers validate the specificity of 3AT2 antibodies in immunoassays?
    Validation requires a multi-step approach:

    • Perform Western blotting with knockout (KO) cell lines or tissues to confirm target binding absence in negative controls .

    • Use immunoprecipitation-mass spectrometry to identify off-target interactions .

    • Validate in multiple assay formats (e.g., ELISA, immunohistochemistry) to assess context-dependent performance .

    Validation StepKey MethodPurpose
    1KO ValidationWestern blotConfirm target specificity
    2Cross-reactivity ScreeningProtein microarrayIdentify off-target binding
    3Functional Assay CorrelationNeutralization/inhibition assaysLink binding to biological activity
  • What experimental design considerations are critical for 3AT2 antibody titration?
    Titration should account for:

    • Antigen abundance: Dilutions must reflect target concentration (e.g., 1:50–1:500 for low-abundance targets) .

    • Matrix effects: Test antibodies in biologically relevant buffers (e.g., serum-supplemented media) .

    • Batch variability: Include reference standards across experiments, especially for polyclonal preparations .

Advanced Research Questions

  • How can researchers resolve contradictions between in silico epitope predictions and functional data for 3AT2 antibodies?
    Discrepancies often arise from:

    • Conformational epitopes: AI tools like MabTope may miss structural dependencies .

    • Post-translational modifications: Glycosylation or phosphorylation near the epitope can alter binding .

    Methodological approach:

    • Validate predictions with cryo-EM or X-ray crystallography for atomic-level epitope mapping .

    • Use alanine scanning mutagenesis to identify critical residues for binding .

  • What strategies improve reproducibility of 3AT2 antibody-based assays in genetic variant studies?

    • NGS-driven clonal analysis: Cluster antibody sequences from B-cell repertoires to identify dominant clonotypes and their somatic hypermutations .

    • Longitudinal validation: Compare antibody performance across viral passages or cell models with evolving genetic profiles .

    ChallengeSolution
    Genetic driftPeriodic re-isolation of antibodies from updated variant libraries
    Epitope occlusionCombine 3AT2 with non-competing antibodies in cocktail formats
  • How should acidic/basic species in 3AT2 antibody formulations be analyzed?
    Use orthogonal methods:

    • Cation-exchange chromatography to separate charge variants .

    • Hydrogen-deuterium exchange mass spectrometry to assess conformational stability of charged species .

    • Correlate findings with in vivo half-life studies using FcRn binding assays .

Methodological Best Practices

  • For structural studies, integrate AI-based epitope prediction with experimental validation (e.g., cryo-EM) to avoid overreliance on computational models .

  • In high-throughput screens, employ NGS-based clustering to prioritize antibodies with diverse CDR3 regions and germline origins .

  • Address batch variability in polyclonal antibodies by transitioning to recombinant monoclonals with defined sequences .

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