4CLL6 Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (Made-to-order)
Synonyms
4CLL6 antibody; At4g19010 antibody; F13C5.1804-coumarate--CoA ligase-like 6 antibody; EC 6.2.1.- antibody; 4-coumarate--CoA ligase isoform 7 antibody; At4CL7 antibody
Target Names
4CLL6
Uniprot No.

Target Background

Function
This antibody targets a coumarate CoA ligase (4CLL6) that plays a crucial role in jasmonic acid biosynthesis. Specifically, it initiates the β-oxidative chain shortening of jasmonic acid precursors. This enzyme exhibits preferential substrate specificity for p-coumarate, ferulate, and caffeate, although it can also utilize, with reduced efficiency, trans-cinnamate and 4-hydroxybenzoate. Furthermore, 4CLL6 is involved in ubiquinone biosynthesis from phenylalanine, activating the propyl side chain of 4-coumarate (and possibly trans-cinnamate and 4-hydroxybenzoate) for subsequent β-oxidative shortening and the formation of the benzenoid moiety of ubiquinone.
Gene References Into Functions
  1. At4g19010 encodes a coumarate CoA ligase (a homolog of the target protein) that catalyzes the conversion of para-coumarate to coumarate-CoA within peroxisomes. This enzyme is essential for ubiquinone (Coenzyme Q) biosynthesis. PMID: 24838974
Database Links

KEGG: ath:AT4G19010

STRING: 3702.AT4G19010.1

UniGene: At.43659

Protein Families
ATP-dependent AMP-binding enzyme family
Subcellular Location
Peroxisome.
Tissue Specificity
Expressed at very low level in leaves.

Q&A

The following FAQs address key considerations for researchers working with the 4CLL6 antibody in academic settings, synthesized from peer-reviewed studies and technical reports. Questions are stratified by complexity, with methodological guidance reflecting current antibody research practices.

Advanced Research Questions

How to resolve discrepancies in 4CLL6-mediated cell signaling data across experimental models?

Address conflicting results through:

  • Microenvironment modulation: Compare effects in:

    • In vitro co-cultures (stromal cells + CLL cells)

    • PDX models with intact lymphoid tissue

  • Dose-response profiling: Establish EC50 values using 8-point dilution curves (1 pM–1 μM range)

  • Kinetic analysis: Perform real-time impedance monitoring (e.g., xCELLigence) to track temporal signaling patterns

Which statistical methods resolve batch-to-batch variability in functional assays?

For T-cell proliferation assays (Fig 5B ):

  • Apply mixed-effects modeling:
    TRF Intensityij=β0+β1Dosei+uj+ϵij\text{TRF Intensity}_{ij} = \beta_0 + \beta_1\text{Dose}_i + u_j + \epsilon_{ij}
    Where uju_j = random batch effect, ϵij\epsilon_{ij} = residual error

  • Require intra-class correlation coefficient (ICC) >0.9 for critical reagents

How to optimize 4CLL6 for multiplexed single-cell RNA-seq applications?

A three-step conjugation validation:

  • Site-specific labeling: Introduce AviTag at CH3 domain for biotinylation

  • Oligo barcode design:

    • 15nt unique molecular identifier (UMI)

    • 10nt antibody barcode

    • 8nt sample index

  • Hybridization efficiency: Require >95% probe binding via qPCR quantification

Mechanistic Studies

What controls validate target engagement in primary CLL samples with low surface antigen density?

Implement dual validation:

ApproachTechnical Replicate ThresholdClinical Correlation
AF647-labeled 4CLL6CV <8% across 3 stainsR² >0.7 with CD20 mRNA levels
Proximity ligation≥50 puncta/cellp<0.01 vs healthy donor B cells

Which in silico tools predict 4CLL6's pharmacokinetics in CNS involvement studies?

Use blood-brain barrier penetration models: logPS=0.38(±0.12)×logP1.9(±0.4)×Molecular Weight+2.1(±0.3)\log PS = 0.38(\pm0.12) \times \log P - 1.9(\pm0.4) \times \text{Molecular Weight} + 2.1(\pm0.3) Where PS = permeability surface-area product, validated against murine microdialysis data

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