ACBP6 Antibody

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Description

ACBP6 Antibody Characteristics and Applications

The ACBP6 antibody has been instrumental in advancing our understanding of ACBP6's subcellular localization and functional roles through:

Western blot analysis

  • Detects endogenous ACBP6 at ~10.4 kDa in Arabidopsis extracts

  • Confirmed absence of ACBP6 in acbp6 T-DNA knockout mutants

Subcellular localization studies

  • Validated cytosolic localization using:

    • Transgenic Arabidopsis expressing ACBP6-GFP

    • Subcellular fractionation (nuclear, cytosolic, membrane fractions)

Mutant characterization

  • Verified acbp6 knockout lines through protein absence confirmation

  • Supported PCR and northern blot analyses of T-DNA insertion mutants

Key Research Findings Enabled by ACBP6 Antibody

Research ContextMethodologyMajor FindingsCitations
Freezing toleranceWestern blot, lipid profilingACBP6 overexpression reduced phosphatidylcholine (-36% to -46%) and increased phosphatidic acid (+67%) under freezing stress
Cold acclimationNorthern/western blotACBP6 expression induced at 48 h post 4°C treatment
Phospholipid bindingFilter-binding assaysRecombinant ACBP6 binds phosphatidylcholine (16:0-PC, 18:0-PC) but not phosphatidic acid
Gene regulationExpression analysisACBP6 upregulates phospholipase Dδ (PLDδ) independent of COLD-RESPONSIVE genes

Functional Insights into ACBP6

The antibody-enabled studies revealed:

  • Stress response mechanism: ACBP6 enhances freezing tolerance through phospholipid remodeling, not via cold-regulated gene induction

  • Metabolic pathway integration:

    • Binds phosphatidylcholine (PC) in vitro

    • Promotes PC-to-phosphatidic acid conversion during cold stress

  • Evolutionary conservation: Shares functional parallels with yeast ACBPs in lipid metabolism regulation but exhibits unique PC-binding capability

Experimental Validation Criteria

Studies using the ACBP6 antibody adhered to rigorous controls:

  • Specificity:

    • No cross-reactivity in acbp6 knockout mutants

    • Distinct banding pattern at 10.4 kDa in wild-type plants

  • Quantitative reliability:

    • Consistent detection across biological replicates in cold-treated samples

    • Correlation between protein levels (western blot) and mRNA expression (northern blot)

Limitations and Future Directions

While the ACBP6 antibody has been critical for these discoveries, current limitations include:

  • Lack of commercial availability (primarily described in research-grade protocols)

  • No reported cross-reactivity with ACBP homologs (ACBP1-ACBP5)

  • Untested applications in immunohistochemistry or non-Arabidopsis species

Future studies could expand its use to investigate ACBP6's role in membrane trafficking and interactions with lipid-transfer proteins .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
ACBP6 antibody; At1g31812 antibody; F5M6.27Acyl-CoA-binding domain-containing protein 6 antibody; Acyl-CoA binding protein 6 antibody; Acyl-CoA-binding protein antibody; ACBP antibody
Target Names
ACBP6
Uniprot No.

Target Background

Function
ACBP6 is an acyl-CoA binding protein that exhibits a high affinity for medium- and long-chain acyl-CoA esters. It is believed to function as an intracellular carrier for these esters. ACBP6 confers resistance to cold and freezing conditions. It interacts with phosphatidylcholine and its derivatives but does not interact with phosphatidic acid or lysophosphatidylcholine, suggesting a potential involvement in phospholipid metabolism.
Gene References Into Functions
  1. Research suggests that AtACBP6 is involved in the biosynthesis of jasmonic acid in Arabidopsis phloem tissues. PMID: 27645136
  2. The mechanism by which ACBP6 confers freezing tolerance varies across different plant organs. PMID: 24556610
  3. Acyl-Coenzyme A-Binding Protein ACB6 enhances freezing tolerance. Histidine-tagged ACBP6 binds phosphatidylcholine, but not phosphatidic acid or lysophosphatidylcholine, indicating a role for ACBP6 in phospholipid metabolism in Arabidopsis. PMID: 18621979
Database Links

KEGG: ath:AT1G31812

STRING: 3702.AT1G31812.1

UniGene: At.23552

Protein Families
ACBP family
Subcellular Location
Cytoplasm. Cell membrane.
Tissue Specificity
Mostly expressed in seeds, stems, and siliques, and, to a lower extent, in leaves, flowers, and roots (at protein level). Highly expressed in root and shoot phloem companion cells.

Q&A

What is ACBP6 and why is it significant in plant research?

ACBP6 is the smallest (10-kDa) of six acyl-CoA-binding proteins found in Arabidopsis thaliana, designated as AtACBP1 to AtACBP6 . It plays important roles in various events related to plant stress responses and development. Recombinant AtACBP6 has been shown to interact with lipids in vitro by binding to acyl-CoA esters and phosphatidylcholine . Its significance derives from its involvement in cold stress tolerance and potential role in lipid trafficking. Research has demonstrated that ACBP6-overexpressing transgenic Arabidopsis plants display enhanced freezing tolerance, while acbp6 T-DNA insertional mutants show increased sensitivity to freezing temperatures (-8°C) . This makes ACBP6 a valuable target for understanding plant adaptation mechanisms to environmental stresses.

How does ACBP6 expression change in response to cold stress?

Northern blot and western blot analyses have revealed that ACBP6 expression is noticeably induced after 48 hours of exposure to 4°C treatment . This cold-induced expression pattern suggests a potential role for ACBP6 in cold stress adaptation. Notably, this induction was not detected in microarray analyses at 24 hours after 4°C treatment, indicating that the ACBP6 response to cold stress may require extended exposure . This timing difference highlights the importance of considering temporal dynamics when studying stress responses. ACBP6's role in cold tolerance appears to be mechanistically linked to altered phospholipid metabolism rather than through the induction of cold-regulated COLD-RESPONSIVE gene expression, as ACBP6 overexpressors exhibited a decline in phosphatidylcholine and elevation in phosphatidic acid compared to wild-type plants following cold acclimation and freezing treatment .

What techniques are most effective for studying ACBP6-protein interactions?

Multiple complementary techniques have proven effective for investigating ACBP6 protein interactions. For the interaction between AtACBP6 and PDLP8, researchers successfully employed isothermal titration calorimetry, pull-down assays, and bimolecular fluorescence complementation (BiFC) assays . BiFC was particularly valuable as it revealed that the AtACBP6-PDLP8 interaction occurs at the plasma membrane, which was unexpected given ACBP6's previously established cytosolic localization . This finding underscores the importance of using multiple approaches and the potential for proteins to have context-dependent localization patterns. For researchers interested in lipid interactions, filter-binding assays have demonstrated that histidine-tagged ACBP6 binds phosphatidylcholine but not phosphatidic acid or lysophosphatidylcholine . The selection of appropriate techniques should be guided by the specific research question and the nature of the potential interacting partners.

How can researchers effectively generate and validate ACBP6 knockout mutants?

The generation and validation of ACBP6 knockout mutants require a systematic approach. T-DNA insertional mutants, such as the acbp6 line (SALK_104339) available from The Arabidopsis Information Resource (TAIR), provide a valuable resource for studying ACBP6 function . Validation of these mutants should follow a multi-step process: First, confirm the presence of the T-DNA insert using PCR with gene-specific primers and T-DNA border primers . For the acbp6 mutant, PCR using gene-specific primers (ML770 and ML771) amplified a 0.9-kb band in wild-type and heterozygous plants but not in homozygous mutants . Conversely, PCR using a T-DNA border primer (LBa1) and a gene-specific primer (ML771) produced a 0.5-kb band in heterozygous and homozygous mutants but not in wild-type plants . Second, sequence the PCR products spanning the junctions between the gene and T-DNA to precisely locate the insertion site . For acbp6, the T-DNA was inserted in the third intron with a resultant 37-bp deletion . Finally, confirm the absence of gene expression using both northern blot analysis (to verify disrupted transcription) and western blot analysis with ACBP6-specific antibodies (to confirm absence of the protein) .

What is the significance of the ACBP6-PDLP8 interaction and how was it discovered?

The interaction between ACBP6 and PDLP8 (Plasmodesmata-Localized Protein 8) represents an important discovery in understanding plasmodesmatal regulation and potential lipid trafficking mechanisms. This interaction was initially identified through a membrane-based interactome analysis that suggested ACBP6 as a potential protein partner of PDLP8 . The interaction was subsequently confirmed using multiple complementary techniques including isothermal titration calorimetry, pull-down assays, and bimolecular fluorescence complementation . The significance of this interaction is multifaceted. First, BiFC data revealed that the AtACBP6-PDLP8 interaction occurs at the plasma membrane, which was unexpected given ACBP6's previously established cytosolic localization . This suggests that ACBP6 may have context-dependent subcellular distributions. Second, western blot analysis using anti-AtACBP6 antibodies showed reduced AtACBP6 expression in the pdlp8 T-DNA insertional mutant . This finding suggests that PDLP8 may influence AtACBP6 accumulation in the sieve elements, specifically in the plasmodesmata where PDLP8 is confined and AtACBP6 has been immunodetected . This interaction potentially implicates ACBP6 in intercellular transport mechanisms.

What are the key considerations for western blot analysis using anti-ACBP6 antibodies?

When performing western blot analysis with anti-ACBP6 antibodies, several methodological considerations are crucial for obtaining reliable results. First, proper sample preparation is essential. For subcellular fractionation studies, differential centrifugation has been successfully employed to separate cellular components before immunoblotting . Second, researchers should be aware of the expected molecular weight of their target. The native ACBP6 protein appears as a 10.4-kD band in wild-type Arabidopsis, while fusion proteins like ACBP6-GFP show a larger 38.4-kD band . Third, appropriate negative controls are critical for validating specificity - the acbp6 T-DNA knockout mutant provides an excellent negative control as it lacks the ACBP6 cross-reacting band evident in wild-type Arabidopsis . Finally, for experimental treatments like cold stress studies, time-course analyses (e.g., 0, 6, 12, 24, and 48 h after treatment) are recommended to capture the dynamics of ACBP6 protein accumulation, which peaks at 48 hours following cold treatment .

How can researchers validate the specificity of antibodies for ACBP6 versus other ACBP family members?

Validating antibody specificity for ACBP6 versus other ACBP family members requires a comprehensive approach due to potential cross-reactivity concerns. Arabidopsis contains six ACBP proteins (AtACBP1 to AtACBP6) ranging from 10 kDa to 73.1 kDa . To ensure antibody specificity, researchers should consider several strategies. First, genetic validation using T-DNA knockout mutants provides the most definitive control - western blot analysis should show absence of the ACBP6-specific band in the acbp6 homozygous mutant . Second, recombinant protein controls can be valuable - testing antibody reactivity against purified recombinant versions of all six ACBPs can identify potential cross-reactivity. Third, size discrimination is helpful as ACBP6 (10 kDa) is significantly smaller than other family members (37.5 to 73.1 kDa) , making it distinguishable by molecular weight. Finally, for advanced applications like immunoelectron microscopy, pre-absorption controls (pre-incubating the antibody with recombinant ACBP6 protein) can demonstrate binding specificity. These approaches collectively ensure that observed signals are specifically attributable to ACBP6 rather than other ACBP family members.

How can ACBP6 antibodies contribute to understanding phospholipid metabolism in plants?

ACBP6 antibodies provide valuable tools for investigating the role of ACBP6 in phospholipid metabolism. Research has shown that ACBP6 binds phosphatidylcholine but not phosphatidic acid or lysophosphatidylcholine in vitro , suggesting a specific role in phospholipid trafficking. ACBP6 overexpressors subjected to cold acclimation and freezing treatment showed significant alterations in lipid profiles, including decreased phosphatidylcholine levels (-36% and -46%) and elevated phosphatidic acid levels (73% and 67%) compared to wild-type plants . These changes mirror those observed in phospholipase Dδ-overexpressing Arabidopsis, suggesting a functional relationship between ACBP6 and phospholipid metabolism pathways . ACBP6 antibodies enable researchers to track the protein's expression, localization, and interactions in response to environmental stresses or genetic modifications, providing insights into how ACBP6 contributes to phospholipid homeostasis. Furthermore, co-immunoprecipitation studies using these antibodies could identify additional protein partners involved in lipid metabolism pathways, expanding our understanding of the complex regulatory networks governing plant lipid dynamics.

What approaches can be used to study the dynamic movement of ACBP6 between cellular compartments?

Studying the dynamic movement of ACBP6 between cellular compartments presents unique challenges that require sophisticated experimental approaches. Since ACBP6 has been localized to both the cytosol and plasmodesmata , understanding its trafficking between these compartments is of significant interest. Time-resolved imaging using fluorescently tagged ACBP6 in transgenic plants provides one approach for tracking protein movement in real-time. Complementary to this, photoactivatable or photoconvertible fusion proteins could allow for pulse-chase experiments to track ACBP6 movement from specific cellular locations. For higher resolution studies, correlative light and electron microscopy (CLEM) combining fluorescence microscopy with immunogold electron microscopy using ACBP6 antibodies could provide detailed insights into ACBP6's dynamic localization. The gating of plasmodesmata can be manipulated using callose synthase inhibitors or inducers to determine how plasmodesmal permeability affects ACBP6 movement between cells. Additionally, FRAP (Fluorescence Recovery After Photobleaching) experiments with ACBP6-GFP could measure the protein's mobility within and between cellular compartments. These approaches collectively would provide a comprehensive view of how ACBP6 moves between the cytosol, plasma membrane, and plasmodesmata in response to developmental or environmental cues.

How can researchers design antibodies with enhanced specificity for ACBP6?

Designing antibodies with enhanced specificity for ACBP6 requires strategic approaches to minimize cross-reactivity with other ACBP family members. While commercially available antibodies may offer varying degrees of specificity, researchers seeking highly specific reagents might consider custom antibody development. Epitope selection is crucial - targeting unique regions of ACBP6 that diverge from other ACBPs improves specificity. Computational analysis of ACBP sequences can identify such regions, which typically occur in non-conserved loops rather than functional domains. Modern computational approaches that combine biophysics-informed modeling with extensive selection experiments can further enhance antibody design specificity . These approaches allow for customized specificity profiles, creating antibodies with either specific high affinity for ACBP6 or cross-specificity for multiple targets if desired . Monoclonal antibody development offers advantages over polyclonal approaches when maximum specificity is required. Validation should include testing against recombinant versions of all six ACBP proteins and in knockout mutant lines. Additionally, phage display technology can be employed to screen large antibody libraries against ACBP6, followed by negative selection against other ACBP family members to isolate highly specific binders . These advanced approaches provide researchers with tools to generate antibodies with precisely defined specificity profiles.

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