ACLA-3 Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (Made-to-order)
Synonyms
ACLA-3 antibody; At1g09430 antibody; F19J9.9ATP-citrate synthase alpha chain protein 3 antibody; ATP-citrate synthase A-3 antibody; EC 2.3.3.8 antibody; ATP-citrate lyase A-3 antibody; Citrate cleavage enzyme A-3 antibody
Target Names
ACLA-3
Uniprot No.

Target Background

Function
ATP citrate lyase (ACL) is the primary enzyme responsible for cytosolic acetyl-CoA synthesis. This acetyl-CoA is crucial for fatty acid elongation and the biosynthesis of isoprenoids, flavonoids, and malonated derivatives. ACL may also supply substrate to cytosolic acetyl-CoA carboxylase, which generates malonyl-CoA. Malonyl-CoA is a precursor for various compounds, including very long-chain fatty acids and flavonoids. ACL is essential for normal growth, development, and the elongation of C18 fatty acids to C20-C24 fatty acids in seeds. Unlike animal ACL enzymes, which are homomeric, plant ACLs are composed of alpha and beta subunits.
Database Links

KEGG: ath:AT1G09430

STRING: 3702.AT1G09430.1

UniGene: At.23527

Protein Families
Succinate/malate CoA ligase beta subunit family
Subcellular Location
Cytoplasm, cytosol.

Q&A

What are anticardiolipin antibodies and how are they classified?

Anticardiolipin antibodies (ACLA) are a type of antiphospholipid antibody that can lead to blood thickening and potentially cause devastating blood clots and pregnancy complications . They appear as different isotypes: IgG, IgM, or IgA anticardiolipin antibodies . These antibodies are part of a broader group of antiphospholipid antibodies that includes lupus anticoagulant and beta-2-glycoprotein-1 antibody . In research contexts, the classification of these antibodies is critical as their isotypes and levels correlate with different clinical manifestations and research outcomes.

How prevalent are anticardiolipin antibodies in systemic lupus erythematosus (SLE) patients?

Approximately 55% of people with SLE test positive for anticardiolipin antibodies, though this percentage varies from 20% to 87% depending on the study population and test method employed . Understanding this prevalence is crucial for research design, as it impacts sample size calculations and stratification approaches in clinical studies. Notably, about 20% of SLE patients test positive for antiphospholipid antibodies an average of 3 years (and up to 7.5 years) before being diagnosed with lupus .

What are the current standard methods for detecting ACLA in research settings?

Detection of anti-cardiolipin antibodies is a crucial aspect of lupus diagnosis and management . The standard approach involves enzyme-linked immunosorbent assays (ELISAs) that can detect and quantify different isotypes (IgG, IgM, IgA). When designing experiments involving ACLA detection, researchers should consider:

  • Testing for all three major antiphospholipid antibodies (ACLA, lupus anticoagulant, and beta-2-glycoprotein-1 antibody) for comprehensive analysis

  • Evaluating "triple positivity" status, which indicates the highest risk for clinical complications

  • Following the 2019 EULAR/ACR criteria for SLE classification which includes APLA testing

  • Implementing appropriate controls to account for potential false positives

How can computational modeling be applied to study ACLA binding specificity?

Computational modeling provides powerful tools for studying antibody-antigen interactions when crystallization is challenging. A combined computational-experimental approach can be employed to characterize ACLA binding specificity:

  • Generate antibody homology models using servers like PIGS (http://circe.med.uniroma1.it/pigs) or knowledge-based algorithms like AbPredict

  • Refine 3D structures through molecular dynamics simulations

  • Perform automated docking with glycan antigens, considering their unique conformational preferences

  • Validate computational models with experimental data such as:

    • Quantitative glycan microarray screening for apparent KD values

    • Site-directed mutagenesis to identify key residues in the combining site

    • Saturation transfer difference NMR (STD-NMR) to define glycan-antigen contact surfaces

This integrated approach allows researchers to understand the structural basis of ACLA binding specificity, which is crucial for developing more specific diagnostic tools and therapeutic interventions.

What experimental approaches are recommended for characterizing novel antibodies against phospholipids?

When characterizing novel antibodies against phospholipids like cardiolipin, researchers should employ a multi-modal approach similar to that used for other antibodies:

  • Sequence determination: Extract RNA, perform cDNA synthesis, and amplify variable heavy (VH) and light (VL) chain fragments using appropriate primers

  • Specificity testing: Use binding assays to confirm target binding and cross-reactivity with related antigens

  • Functional characterization: Assess the antibody's ability to block interactions (e.g., with MHC class II molecules) and inhibit downstream signaling

  • Cellular assays: Evaluate binding to activated cells and effects on cellular functions (e.g., cytokine secretion)

  • Internalization studies: Assess endocytosis efficiency into relevant cell types

This comprehensive characterization is essential for understanding the potential research and clinical applications of novel anti-phospholipid antibodies.

How should researchers design longitudinal studies to monitor ACLA levels in SLE patients?

Designing longitudinal studies to monitor ACLA levels requires careful consideration of several factors:

  • Sampling frequency: Evidence suggests ACLA can be intermittently positive, so regular monitoring is required

  • Risk stratification: Patients with certain conditions (e.g., low platelets, autoimmune hemolytic anemia) may require more frequent monitoring

  • Treatment effects: Consider that medications like hydroxychloroquine can reduce antibody levels, potentially masking positive results in well-treated patients

  • Comprehensive testing: Include all three major antiphospholipid antibodies in testing panels

  • Clinical correlation: Monitor for clinical manifestations like livedo reticularis, thrombocytopenia, or blood clots that might warrant additional testing

A well-designed longitudinal study should account for these variables to accurately assess the relationship between ACLA levels and clinical outcomes over time.

What are the common pitfalls in ACLA testing and how can they be addressed?

Researchers face several challenges when working with ACLA testing:

  • Variability in test methods: Different assays and cutoff values can lead to inconsistent results across studies

    • Solution: Standardize testing protocols and use internationally validated reference materials

  • Intermittent positivity: ACLA may be transiently positive or negative

    • Solution: Implement serial testing at defined intervals in research protocols

  • False positives: Infections and certain medications can cause transient ACLA positivity

    • Solution: Include careful medical history documentation and appropriate control groups

  • Interference with other tests: Lupus anticoagulant can interfere with coagulation assays like Factor VIII Activity Assay

    • Solution: Implement additional confirmatory testing when interference is suspected

  • Isotype variability: Different isotypes (IgG, IgM, IgA) have different clinical implications

    • Solution: Test for all isotypes and analyze their contributions separately

How can researchers differentiate between pathogenic and non-pathogenic ACLA in experimental models?

Differentiating pathogenic from non-pathogenic ACLA is a significant research challenge that requires sophisticated approaches:

  • Epitope mapping: Determine specific binding sites using techniques like:

    • Glycan microarray screening to define specificity profiles

    • Site-directed mutagenesis to identify critical binding residues

    • STD-NMR to characterize antigen contact surfaces

  • Functional assays: Assess the antibodies' ability to:

    • Activate complement

    • Induce platelet aggregation

    • Disrupt trophoblast function (for pregnancy complications)

    • Activate endothelial cells

  • In vivo models: Evaluate antibody pathogenicity in animal models through:

    • Passive transfer experiments

    • Assessment of thrombosis formation

    • Evaluation of pregnancy outcomes

  • Computational screening: Use validated 3D antibody models to screen against the human glycome to assess specificity for target antigens versus cross-reactivity with self-antigens

How can ACLA research findings be integrated with other autoantibody studies in autoimmune disease research?

Integration of ACLA research with broader autoantibody studies requires:

  • Multi-parameter analysis: Correlate ACLA findings with other autoantibodies such as:

    • Anti-dsDNA antibodies

    • Anti-Ro/SSA and anti-La/SSB antibodies

    • Anti-Smith antibodies

    • Complement levels

  • Systems biology approaches: Employ network analysis to understand:

    • Autoantibody clustering patterns

    • Temporal relationships in antibody development

    • Correlations with disease activity indices

  • Biorepository development: Establish standardized biorepositories with:

    • Longitudinal samples from well-characterized patients

    • Comprehensive clinical data

    • Standardized processing and storage protocols

  • Collaborative research networks: Implement multi-center studies to:

    • Increase sample sizes

    • Validate findings across diverse populations

    • Develop consensus on classification criteria

What novel therapeutic approaches target antiphospholipid antibodies in research settings?

Current research exploring therapeutic approaches targeting antiphospholipid antibodies includes:

  • B-cell targeted therapies: Investigational approaches to reduce antibody production

    • Anti-CD20 monoclonal antibodies

    • Proteasome inhibitors

    • BTK inhibitors

  • Complement inhibition: Based on the role of complement activation in APS pathogenesis

    • Anti-C5 antibodies

    • Inhibitors of alternative pathway activation

  • Novel anticoagulation strategies: Beyond traditional anticoagulants

    • Factor XIa inhibitors

    • Tissue factor pathway inhibitors

  • Peptide-based approaches: Competitive inhibition of antibody binding

    • Domain I peptides of β2GPI

    • Mimetic peptides that block ACLA binding

  • Immunomodulatory strategies: Following approaches similar to those used with other monoclonal antibodies

    • Combination therapy with immune checkpoint inhibitors

    • Evaluation of synergistic effects with existing immunomodulators

How can computational modeling and artificial intelligence advance ACLA antibody research?

Future research in ACLA antibodies will likely leverage advanced computational tools:

  • Deep learning antibody design: Using neural networks to:

    • Predict optimal antibody sequences for therapeutic applications

    • Design high-specificity antibodies with reduced cross-reactivity

  • Molecular dynamics simulations: Employing advanced simulation techniques to:

    • Model antibody-antigen interaction dynamics at atomic resolution

    • Predict conformational changes upon binding

    • Identify allosteric effects in antibody function

  • Virtual screening approaches: Implementing in silico methods to:

    • Screen antibody candidates against human glycome databases

    • Predict off-target binding and potential side effects

    • Identify optimal epitopes for diagnostic antibody development

  • Integrated multi-omics analysis: Combining antibody research with:

    • Transcriptomics to understand B-cell response patterns

    • Proteomics to identify novel autoantibody targets

    • Metabolomics to correlate with disease activity

What are the emerging techniques for monitoring ACLA-associated immune complexes in tissue samples?

Emerging techniques for studying ACLA-associated immune complexes in tissues include:

  • Multiplexed imaging mass cytometry: Allowing simultaneous detection of:

    • Multiple antibody isotypes

    • Complement components

    • Cellular markers

    • Tissue damage indicators

  • Single-cell antibody secretion assays: Enabling:

    • Identification of ACLA-producing B cells

    • Characterization of clonal relationships

    • Assessment of somatic hypermutation patterns

  • Spatial transcriptomics: Correlating antibody deposition with:

    • Local gene expression changes

    • Inflammatory signatures

    • Tissue remodeling markers

  • In situ antibody capture technologies: Providing:

    • Direct evidence of antibody binding in tissues

    • Quantification of local antibody concentrations

    • Correlation with pathological changes

These advanced techniques will help bridge the gap between serological findings and tissue pathology, ultimately leading to improved understanding of ACLA-mediated disease mechanisms.

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