AFP4 Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 Weeks (Made-to-Order)
Synonyms
AFP4 antibody; TMAC2 antibody; At3g02140 antibody; F14P3.21 antibody; F1C9.7Ninja-family protein AFP4 antibody; ABI five-binding protein 4 antibody; ABI5-binding protein 4 antibody; Protein TWO OR MORE ABRES-CONTAINING GENE 2 antibody
Target Names
AFP4
Uniprot No.

Target Background

Function
This antibody targets a protein that acts as a negative regulator of abscisic acid (ABA) and salinity stress responses.
Gene References Into Functions
TMAC2, the target of this antibody, functions within the nucleus as a key negative regulator of abscisic acid and salt stress responses. See PMID: 17195036 for further details.
Database Links

KEGG: ath:AT3G02140

STRING: 3702.AT3G02140.1

UniGene: At.18540

Protein Families
Ninja family
Subcellular Location
Nucleus.
Tissue Specificity
Predominantly expressed in roots and seedlings.

Q&A

What is Alpha-Fetoprotein and why is it a significant target for antibody development?

Alpha-fetoprotein (AFP) is an oncofetal glycoprotein primarily produced by the fetal liver and yolk sac during early development. It serves as the main protein during the first 3 months of fetal development, with levels significantly decreasing by age 1 . In adults, elevated AFP levels are associated with specific cancers, particularly hepatocellular carcinoma (HCC), testicular cancer, and ovarian germ cell tumors .

AFP is particularly valuable as a research target because:

  • It functions as a well-established tumor marker for HCC diagnosis and monitoring

  • Its glycoforms (particularly fucosylated variants) demonstrate higher specificity for cancer detection compared to total AFP

  • It has potential applications in drug delivery and immunotherapy development

The development of specific antibodies against AFP and its modified forms has become crucial for improving diagnostic accuracy, particularly in distinguishing between benign liver conditions and malignancies .

What are the key methodological considerations when developing and validating AFP antibodies?

Developing reliable AFP antibodies requires rigorous validation through multiple complementary approaches:

Essential Validation Steps:

  • Target Confirmation: Demonstrate specificity using knockout cell lines that lack AFP expression (e.g., testing antibodies on α-1,6-fucosyltransferase deficient HepG2 cells for fucosylated AFP antibodies)

  • Multiple Detection Methods: Confirm antibody performance across various platforms:

    • Western blot analysis for protein size verification

    • ELISA for quantitative binding assessment

    • Immunohistochemistry for tissue localization

    • Flow cytometry for cellular expression patterns

  • Control Selection: Include appropriate positive controls (HepG2 cell lysates for AFP) and negative controls (cells known to lack AFP expression)

  • Cross-Reactivity Testing: Verify absence of binding to related proteins or tissues not expressing the target protein

  • Reference Standard Comparison: Evaluate new antibodies against established reference antibodies to ensure detection of identical expression patterns

Importantly, researchers have found that nearly half of commercially available antibodies may not function as advertised for their recommended applications, highlighting the critical importance of thorough validation .

How do different AFP antibody types compare in diagnostic applications for hepatocellular carcinoma?

Different AFP antibody types demonstrate varying diagnostic performance for HCC detection:

Antibody/Diagnostic ParameterSensitivitySpecificityAUROCKey Characteristics
Standard AFP (>20 ng/mL)40%–65%76%–96%0.54–0.80Most widely used but has limitations in early detection
AFP-L3 (>15%)45%–90%95%0.74–0.84Higher specificity for HCC than total AFP
FasMab (fucosylated AFP-specific)Not specified*High for HCCNot specified*Reacts with AFP from HepG2 cells but not with AFP from fucosyltransferase-deficient cells
Combined AFP, AFP-L3, DCP81%–93%69%–87%0.88–0.93Enhanced diagnostic value through biomarker combination
AFP + GP7375%–91%Not specified0.91–0.95Promising combination for improved detection

*Note: The exact sensitivity/specificity values for FasMab were not provided in the source material

FasMab represents a significant advancement, as it can detect fucosylated AFP that may not be recognized by traditional LCA-reactive AFP-L3 tests. This is because LCA recognizes only bi-antennary N-glycans with a core fucose, potentially missing other fucosylated forms .

What are the primary technical challenges affecting AFP antibody performance in laboratory research?

Researchers face several technical challenges when using AFP antibodies that can impact experimental reproducibility and data quality:

  • Interfering Substances: In single-step detection methods, interfering antibodies may:

    • Bind simultaneously to capture and detection antibodies, causing false positives

    • Inhibit proper interaction between AFP and anti-AFP antibodies, leading to false negatives

  • Antibody Lot Variability: Significant performance variations have been documented between:

    • Different lots from the same manufacturer

    • Different vials from the same lot

  • Cross-Reactivity Issues: Unexpected cross-reactivity can occur with:

    • Fluorophores (e.g., AF700)

    • Endogenous biotinylated proteins when using biotin-avidin detection systems

    • Protein A shedding from Sepharose beads

  • Sample-Specific Factors: Performance may vary due to:

    • Genetic variations in samples

    • Post-mortem interval and preservation methods

    • Laboratory environmental conditions

    • Sample processing techniques

To address these challenges, researchers should implement comprehensive validation protocols and standardize experimental conditions across studies.

How are researchers utilizing AFP antibodies to understand the immunosuppressive mechanisms of AFP in cancer?

Recent research has revealed that tumor-derived AFP (tAFP) creates an immunosuppressive microenvironment that promotes cancer progression. AFP antibodies are being used to investigate these mechanisms:

  • Dendritic Cell Modulation Studies: AFP antibody-based experiments have demonstrated that tAFP:

    • Reduces expression of HLA-DR, CD40, CD80, CD83, CD86, CD206, and MHCII on dendritic cells

    • Alters TLR4 (Toll-like receptor 4) expression, blocking the production of proinflammatory cytokines

    • Reduces IL-12 and TNF-alpha synthesis while increasing anti-inflammatory IL-10 and TGF-beta production

  • T-Cell Interaction Analysis: Research using AFP antibodies has shown that tAFP:

    • Causes differentiation of ThCD4+ lymphocytes into regulatory T cells through altered tolerogenic dendritic cells

    • Affects T-cell stimulation by inhibiting the costimulatory signal required for T-cell activation

  • NK Cell Function Investigations: AFP antibodies have helped reveal that tAFP:

    • Induces apoptosis of NK cells

    • Blocks NK cell activation by dendritic cells by reducing CD1 (especially CD1d) expression

    • Interferes with the ability of NK cells to identify lipid antigens presented by dendritic cells via CD1d

These findings are advancing our understanding of how AFP contributes to tumor immune evasion and are informing the development of immunotherapeutic approaches targeting AFP-mediated immunosuppression.

What methodological approaches are being used to develop AFP antibodies as cancer therapeutic carriers?

Researchers are exploring AFP's unique structural properties for targeted drug delivery using various methodological approaches:

  • Structural Optimization Studies:

    • AFP's V-shaped structure with three specific peptide domains provides a hydrophobic pocket between domains I and III

    • This pocket can covalently bind hydrophobic ligands including drugs and toxins

    • Research focuses on the pocket's binding capacity and molecule retention under various physiological conditions

  • pH-Responsive Delivery Development:

    • In alkaline blood pH, AFP undergoes conformational changes that protect transported molecules from being seized by albumins

    • In acidic intracellular environments, conformational changes trigger drug release

    • Researchers are studying these pH-dependent conformational shifts to optimize drug delivery timing

  • Receptor Targeting Enhancement:

    • Unlike albumins, AFP demonstrates higher selectivity for target cells through RECAF (AFP receptors)

    • Methodologies focus on enhancing AFP's binding affinity to these receptors to improve targeting specificity

    • Comparative studies with albumin carriers help identify unique advantages of AFP-based delivery systems

These approaches are helping develop AFP antibody-based therapeutic systems that can selectively deliver cytotoxic compounds to cancer cells while minimizing damage to healthy tissues.

What validation methods should researchers employ to ensure the reliability of AFP antibody-based assays?

Ensuring reliable AFP antibody performance requires comprehensive validation protocols:

  • Expression Pattern Verification:

    • Compare antibody detection patterns with known AFP expression profiles from mRNA or proteomic databases

    • Use reference antibodies to confirm identical expression patterns when possible

    • Employ multiple cell types with different AFP expression levels to confirm expected staining patterns

  • Negative Control Implementation:

    • Test antibodies on cells where the target protein is known to be absent (e.g., using B cells to test for T cell markers)

    • Use knockout cell lines to definitively confirm antibody specificity

    • Verify complete absence of the target by testing knockout cells with validated detection methods

  • Performance Metrics Assessment:

    • Establish minimum performance criteria based on application requirements

    • For discrete antigen expression (like CD4 on T cells), lower signal reproducibility may be acceptable

    • For quantitative measurements (like phospho-STAT1 levels), higher intensity reproducibility is essential

  • Multi-Method Concordance:

    • Verify antibody performance across different techniques (Western blot, ELISA, IHC, flow cytometry)

    • Assess both analytical and clinical sensitivity/specificity

    • Compare results against established reference methods

These validation approaches help ensure that experimental findings reflect true biological phenomena rather than technical artifacts.

How can researchers distinguish between true and false AFP elevations in clinical samples?

Distinguishing true AFP elevations from false positives requires methodological rigor and consideration of multiple factors:

Factors Affecting AFP Levels in Non-HCC Conditions:

  • Liver Inflammation: Serum AFP can be falsely elevated in patients with:

    • Chronic active hepatitis

    • Advanced fibrosis

    • Cirrhosis without evidence of HCC

  • Liver Enzyme Levels: Research demonstrates that:

    • Higher ALT and AST levels correlate with elevated AFP in non-HCC patients

    • Patients without antiviral therapy have significantly higher median AFP levels compared to those receiving antiviral treatment

  • Viral Load Impact: Studies show:

    • Non-antiviral treatment groups have higher proportions of AFP > 1× ULN than antiviral groups (37.3% vs. 11.4% in non-HCC patients)

    • HBV DNA status significantly affects AFP diagnostic performance

Methodological Approaches to Improve Accuracy:

  • Cutoff Value Adjustment: Research indicates that:

    • Different cutoff values should be applied for different patient subgroups

    • In patients with AST ≤ 1× ULN, AFP achieves the highest AUCs regardless of antiviral treatment status (AUCs = 0.813 and 0.806)

  • Combined Biomarker Approach: Evidence suggests:

    • Using AFP in combination with AFP-L3 and DCP enhances predictive values

    • The GALAD score (incorporating age, sex, AFP, AFP-L3, and DCP) achieves even higher diagnostic accuracy (AUC 0.976)

  • Alternative Biomarkers for Low-AFP Cases: For patients with low AFP levels:

    • miR-125b and miR-205 demonstrate sensitivity of 90% in HBV-related HCCs with AFP < 400 ng/mL

    • miR-15b and miR-130b combination shows >90% sensitivity and specificity

    • For AFP < 20 ng/mL, miR-26a, 27a, 7b and combination of miR-122 and miR-7b exhibit sensitivity of 80%

These methodological refinements help researchers accurately identify true AFP elevations associated with HCC, improving both research outcomes and clinical decision-making.

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