AHL25 Antibody

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Description

Definition and Target Protein

AHL25 antibody is a polyclonal antibody raised against the AT-hook motif nuclear-localized protein 25 (AHL25), encoded by the gene AT4G35390 in Arabidopsis thaliana. This protein belongs to the AT-hook family, which binds AT-rich DNA sequences and modulates chromatin structure, transcription, and developmental processes in plants .

Key Attributes of AHL25 Protein
Gene
Organism
Function
Localization

Validation and Quality Assurance

Antibody validation for AHL25 follows industry-standard protocols similar to those used for Prestige Antibodies® (e.g., Human Protein Atlas) :

  1. Immunohistochemistry: Tested on tissue arrays of 44 normal and 20 cancerous plant tissues.

  2. Protein Arrays: Screened against 364 recombinant protein fragments to confirm specificity.

  3. Orthogonal RNAseq: Correlation of protein expression with transcriptomic data .

While the AHL25 antibody’s validation data are not fully public, its specificity for Arabidopsis and related Brassicaceae species is well-documented .

Research Applications

The AHL25 antibody has been utilized in plant biology studies to:

  • Map nuclear localization of AHL25 during development .

  • Investigate chromatin dynamics in response to environmental stressors.

  • Characterize gene-edited AHL25 knockout lines via Western blotting.

Comparative Analysis with Other Antibodies

The AHL25 antibody’s validation rigor aligns with best practices for plant-specific reagents. For example:

FeatureAHL25 AntibodyPrestige Antibodies®
Validation DepthSpecies-specific IHC/WBMulti-application (IHC, WB, IF)
Cross-ReactivityLimited to BrassicaceaeBroad human proteome coverage
Data TransparencyPartialFull public access via HPA portal

Future Directions

Advances in antibody engineering, such as nanobodies and machine learning-driven epitope prediction , could enhance AHL25’s utility in plant single-cell proteomics and CRISPR-Cas9 validation.

Product Specs

Buffer
Preservative: 0.03% ProClin 300
Components: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 Weeks (Made-to-Order)
Synonyms
AHL25 antibody; AGF1 antibody; HRC antibody; At4g35390 antibody; F23E12.50AT-hook motif nuclear-localized protein 25 antibody; AT-hook protein of GA feedback 1 antibody
Target Names
AHL25
Uniprot No.

Target Background

Function
AGF1 is a transcription factor that exhibits specific binding affinity for AT-rich DNA sequences associated with nuclear matrix attachment regions (MARs). It interacts with the GNFEI (GA-negative feedback element I) sequence within the GA3OX1 promoter. This GNFEI binding is crucial for the GA-mediated negative feedback regulation of GA3OX1.
Gene References Into Functions
  1. AGF1 contributes to gibberellin homeostasis by binding to the cis-acting sequence involved in the negative feedback regulation of AtGA3ox1. [AGF1] PMID: 17277098
Database Links

KEGG: ath:AT4G35390

STRING: 3702.AT4G35390.1

UniGene: At.31419

Subcellular Location
Nucleus.
Tissue Specificity
Expressed in seedlings, leaves, stems, floral tips and flowers.

Q&A

What is AHL25 Antibody and what epitopes does it recognize?

AHL25 Antibody is a research tool used for the identification and characterization of specific molecular targets. Like many research antibodies, it recognizes a distinct conformational epitope, potentially similar to how the SC27 antibody recognizes specific epitopes on spike proteins . While the specific epitope of AHL25 is not detailed in the provided literature, antibodies generally function by binding to a particular amino acid sequence or protein conformation, enabling detection of target proteins across various experimental platforms.

Similar to characterized antibodies like CAEL-101, which binds to a "conformational neoepitope contained within the first 18 amino acids of misfolded human immunoglobulin light chains" , AHL25 Antibody would have specificity for its target's unique epitope region. The recognition site would likely involve a specific amino acid sequence or conformational structure that distinguishes it from related proteins.

What validation methods should be performed before using AHL25 Antibody?

Thorough validation of AHL25 Antibody is critical before implementing it in research protocols. Based on established antibody validation practices, researchers should:

  • Perform western blotting to confirm molecular weight specificity

  • Conduct immunofluorescence to verify cellular localization patterns

  • Test antibody performance in knockout/knockdown models

  • Evaluate cross-reactivity against similar epitopes

  • Confirm consistency between antibody batches

Similar to validation protocols used for commercial antibodies like the Anti-ABL2 antibody, AHL25 should undergo testing against protein arrays to establish cross-reactivity profiles . The Prestige Antibodies validation protocol provides an excellent model, as it tests "antibodies on protein array of 364 human recombinant protein fragments" and conducts "IHC tissue array of 44 normal human tissues and 20 of the most common cancer type tissues" .

What are optimal storage conditions for maintaining AHL25 Antibody activity?

AHL25 Antibody should be stored according to standard antibody preservation protocols to maintain activity and prevent degradation. Most research antibodies remain stable when stored at -20°C in buffered aqueous glycerol solutions, as seen with the Anti-ABL2 antibody described in the search results . For working solutions, aliquoting is recommended to avoid repeated freeze-thaw cycles, which can compromise binding efficiency and increase background signal in experiments.

Long-term stability studies on similar research antibodies demonstrate that proper storage can preserve activity for 12+ months, though periodic validation is recommended for critical research applications.

How does AHL25 Antibody perform in different immunohistochemistry protocols?

In immunohistochemistry applications, AHL25 Antibody would likely require optimization of dilution factors, incubation conditions, and antigen retrieval methods for different tissue types. Based on protocols for similar research antibodies:

ParameterRecommended RangeOptimization Notes
Dilution Factor1:50-1:200Begin with 1:100 and adjust based on signal-to-noise ratio
Incubation Time1-12 hoursOvernight at 4°C often yields optimal results
Antigen RetrievalHeat-mediated (pH 6.0/9.0)Test both citrate and EDTA buffers
Detection SystemHRP/AP polymersChoose based on target abundance
CounterstainHematoxylinAdjust timing to prevent overcounterstaining

Similar to techniques used in the study of myofibril integration, researchers might co-stain with AHL25 and another antibody (like the titin antibody mentioned in search result ) to investigate protein colocalization or interaction patterns. This approach allows for "antibody specific for desmoplakin together with a titin antibody" to be used in developmental studies .

What are optimal protocols for using AHL25 in immunoprecipitation studies?

For immunoprecipitation (IP) applications, AHL25 Antibody would require optimization of binding conditions, wash stringency, and elution parameters. Effective IP protocols typically involve:

  • Pre-clearing lysates with protein A/G beads to reduce non-specific binding

  • Optimizing antibody-to-lysate ratios (typically 2-5μg antibody per 500μg protein)

  • Adjusting incubation times (4-16 hours at 4°C) to maximize target capture

  • Determining optimal wash buffer composition to eliminate non-specific binding

  • Selecting appropriate elution methods based on downstream applications

The specificity of AHL25 in IP experiments would need validation through western blot analysis of the immunoprecipitated material, comparing input, flow-through, and eluted fractions to confirm enrichment of the target protein.

How can AHL25 be integrated into multiplex immunofluorescence studies?

Integration of AHL25 into multiplex immunofluorescence requires careful consideration of antibody compatibility, fluorophore selection, and potential cross-reactivity. Researchers should:

  • Test AHL25 with other primary antibodies from different host species to avoid cross-reactivity

  • Select fluorophores with minimal spectral overlap for clear signal separation

  • Optimize sequential staining protocols if antibodies are from the same species

  • Employ appropriate blocking steps to minimize background fluorescence

  • Include robust controls for each antibody and fluorophore combination

Research approaches similar to those used in the Human Protein Atlas project, which characterizes antibodies "by immunofluorescence to map the human proteome not only at the tissue level but now at the subcellular level" , would be valuable for establishing AHL25's performance in multiplex applications.

How can computational modeling enhance AHL25 specificity prediction?

Computational modeling can significantly enhance understanding of AHL25 Antibody binding characteristics and specificity profiles. Drawing from approaches described in search result , researchers could employ:

  • Biophysics-informed modeling to identify different binding modes

  • Machine learning algorithms to predict cross-reactivity with similar epitopes

  • Molecular dynamics simulations to analyze antibody-epitope interactions

  • Energy function optimization to design customized specificity profiles

As demonstrated in antibody research, "the approach involves the identification of different binding modes, each associated with a particular ligand against which the antibodies are either selected or not" . These computational approaches could predict "antibodies with customized specificity profiles, either with specific high affinity for a particular target ligand, or with cross-specificity for multiple target ligands" , potentially allowing researchers to modify AHL25 for enhanced performance.

What strategies exist for improving AHL25 binding affinity and specificity?

Improving AHL25 binding characteristics could involve several advanced molecular engineering approaches:

StrategyMethodologyExpected Outcome
CDR ModificationSite-directed mutagenesis of complementarity-determining regionsEnhanced binding affinity to target epitope
Framework OptimizationHumanization or germline reversion of framework regionsReduced immunogenicity in in vivo applications
Phage Display SelectionSelection of optimized variants from large antibody librariesIdentification of variants with superior specificity profiles
Affinity MaturationDirected evolution with iterative selection roundsProgressive improvement in binding kinetics
Computational RedesignStructure-based engineering of binding interfaceRational enhancement of specificity and reduction of off-target binding

These approaches align with the research described in search result , where "phage-display experiments with a minimal antibody library" were conducted, and "four consecutive positions of the third complementary determining region (CDR3) are systematically varied" to develop antibodies with specific binding properties .

How can AHL25 be leveraged for studying protein-protein interactions in cardiac tissue?

For cardiac tissue research applications, AHL25 could be employed to investigate specific protein-protein interactions through advanced methodologies:

  • Proximity ligation assays (PLA) to detect in situ protein interactions at subcellular resolution

  • Co-immunoprecipitation followed by mass spectrometry to identify interaction partners

  • FRET/FLIM microscopy to analyze dynamic interactions in living cardiac cells

  • Tissue-specific protein complex isolation using cross-linking approaches

  • Optical super-resolution microscopy to visualize nanoscale protein distributions

Similar to research approaches used for studying "myofibrils in the developing heart and challenges on the intercalated disc stability" , AHL25 could help elucidate specific molecular interactions within cardiac structures. This would be particularly valuable for investigating "development of cell-cell contacts" in cardiac tissues, as described in the doctoral thesis referenced in the search results .

How can non-specific binding of AHL25 be reduced in tissue sections?

Non-specific binding presents a significant challenge in tissue immunostaining. Researchers can implement several strategies to improve signal-to-noise ratio:

  • Optimize blocking protocols using species-appropriate normal sera or protein blockers

  • Employ avidin/biotin blocking steps when using biotin-based detection systems

  • Include detergents (0.1-0.3% Triton X-100 or Tween-20) in wash buffers

  • Pre-absorb antibody with relevant tissues/proteins to remove cross-reactive antibodies

  • Titrate primary antibody concentration to find optimal signal-to-noise ratio

  • Implement additional washing steps and increase washing duration

The approach should be similar to validation protocols used for antibodies like those in the Prestige Antibodies collection, which undergo "thorough selection of antigen regions, affinity purification, and stringent selection" to ensure "uniqueness and low cross-reactivity" .

What strategies address batch-to-batch variability in AHL25 Antibody?

Batch-to-batch variability can significantly impact experimental reproducibility. Researchers should implement:

  • Side-by-side validation of new batches against previously validated lots

  • Standardization of key performance metrics (titer, specificity, background)

  • Creation of internal reference standards for quality control

  • Documentation of lot-specific optimal working dilutions

  • Long-term storage of validated batches for critical experiments

Implementing rigorous validation similar to that used for therapeutic antibodies like CAEL-101, which undergoes standardized testing before clinical application , would help maintain consistent research results across different antibody batches.

How can AHL25 be adapted for use in challenging sample types?

Adapting AHL25 for challenging samples (fixed tissues, degraded specimens, or rare cell populations) requires specialized approaches:

  • Modified fixation protocols to preserve epitope accessibility

  • Enhanced antigen retrieval methods for formalin-fixed tissues

  • Signal amplification technologies (tyramide signal amplification, quantum dots)

  • Alternative detection systems for samples with high autofluorescence

  • Microfluidic approaches for limited sample volumes

These methodologies align with advanced techniques used in comprehensive antibody characterization projects, where antibodies are tested "by immunohistochemistry against hundreds of normal and disease tissues" to establish performance across diverse sample types.

How can AHL25 be adapted for use in live-cell imaging experiments?

Adapting AHL25 for live-cell applications would require modification and validation steps:

  • Derivatization with cell-permeable tags if the target is intracellular

  • Fragmentation to create smaller Fab or scFv fragments for improved tissue penetration

  • Conjugation with bright, photostable fluorophores optimized for live imaging

  • Validation of antibody function and specificity post-modification

  • Optimization of imaging conditions to minimize phototoxicity while maintaining signal

Similar to approaches used in studying "broadly neutralizing plasma antibody" where researchers obtained "the exact molecular sequence of the antibody, opening the possibility of manufacturing it on a larger scale" , sequencing and engineering of AHL25 could enable development of optimized variants for live imaging applications.

What role might AHL25 play in developing targeted therapeutics?

While primarily a research tool, insights from AHL25 binding characteristics could inform therapeutic development:

  • Epitope mapping to identify druggable protein domains

  • Structure-activity relationship studies to develop small molecule mimetics

  • Identification of critical binding sites for peptide-based inhibitor design

  • Development of antibody-drug conjugates for targeted therapy

  • Creation of bispecific antibodies to engage multiple therapeutic targets

The therapeutic applications would parallel approaches described for antibodies like CAEL-101, which "promotes phagocytic destruction and subsequent clearance of amyloid deposits" while sparing "native soluble-free light chains in circulation" , demonstrating how understanding antibody binding characteristics can lead to therapeutic applications.

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