ATL21B Antibody

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Description

Clarification of "ATL21B Antibody" vs. ATL21

  • ATL21 was analyzed in a study of clonal T-cell receptor (TCR) repertoires in ATL, where it exhibited a rare B-cell clonal expansion alongside T-cell expansion .

  • This sample showed dual clonality:

    • T-cell clonotype: TRBV4-2 and TRAV13-1 .

    • B-cell clonotype: IGKV3-20/J4 .

No therapeutic or diagnostic antibody named "ATL21B" is described in the provided sources.

Antibodies in ATL Research: Key Findings

ATL is a malignancy caused by HTLV-1 infection, characterized by clonal T-cell expansions. Below are antibodies and related technologies studied in ATL contexts:

Monoclonal Antibodies Targeting T-Cell Receptors

Monoclonal antibodies (mAbs) have been developed to recognize specific regions of the TCR, including:

  • TCS1: Targets Vβ1+ T cells, identifying motile T cells with cytotoxic activity .

  • BB3: Recognizes Vβ-specific TCR regions, aiding in distinguishing T-cell subsets .

  • Alemtuzumab: Anti-CD52 mAb used in clinical settings for T-cell malignancies, including ATL .

AntibodyTargetApplicationSource
TCS1Vβ1 TCRIdentifying cytotoxic T-cell subsets
BB3Vβ TCR regionsDistinguishing T-cell subsets
AlemtuzumabCD52Therapeutic depletion of T cells

Clonal TCR Repertoires in ATL

RNA-seq and ATAC-seq analyses reveal clonal expansions in ATL:

  • TCRαβ Repertoires: RNA-seq identifies dominant clonotypes (e.g., TRBV4-2 and TRAV13-1 in ATL21) .

  • Proviral Load: Correlates with clonality; ATL21 had a proviral load of 26.99% .

  • B-cell Clonality: Rare in ATL, but observed in ATL21 (IGKV3-20/J4) .

SampleTCR ClonotypeB-cell ClonotypeProviral Load
ATL21TRBV4-2 + TRAV13-1IGKV3-20/J426.99%

Emerging Antibody Technologies in Cancer Therapy

While not directly linked to ATL21B, several antibody-based strategies show promise in T-cell malignancies:

Single-Domain Antibodies (sdAbs)

  • DesAb-O: A single-domain antibody targeting Aβ42 oligomers, demonstrating neutralization of neurotoxic aggregates .

  • Application: Could inspire similar designs for ATL-specific antigens.

Brain Shuttle Antibodies

  • Trontinemab: An anti-Aβ antibody fused with a TfR-binding Fab fragment to enhance CNS penetration .

  • Mechanism: Bypasses the blood-brain barrier, a potential model for targeting ATL-associated T cells in sanctuary sites.

TechnologyTargetMechanismSource
Brain ShuttleTfR + AβEnhanced CNS penetration
Single-Domain (sdAb)Aβ42 oligomersNeutralization of neurotoxic species

Challenges and Future Directions

  • Clonal Heterogeneity: ATL samples often exhibit oligoclonal expansions, complicating targeted therapies .

  • B-cell Clonality: Rare but observed in ATL21, suggesting potential for dual-targeting strategies .

  • Antibody Delivery: Intracellular delivery remains a challenge, though TRIM21-mediated pathways show promise .

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
ATL21B; At2g46494; F11C10; F13A10; Putative RING-H2 finger protein ATL21B; RING-type E3 ubiquitin transferase ATL21B
Target Names
ATL21B
Uniprot No.

Target Background

Database Links

KEGG: ath:AT2G46494

STRING: 3702.AT2G46494.1

UniGene: At.75545

Protein Families
RING-type zinc finger family, ATL subfamily
Subcellular Location
Membrane; Single-pass membrane protein.

Q&A

What is the relationship between ATL21B Antibody and HTLV-1-associated antigens?

ATL21B antibody detects specific antigens found in the cytoplasm of T-cells infected with HTLV-1. These antigens are present in approximately 1-5% of cells from T-cell lines derived from ATL patients, such as the MT-1 cell line . The antigens recognized by ATL-specific antibodies are not detected in other human lymphoid cell lines, including six T-cell lines, seven B-cell lines, and four non-T non-B cell lines, demonstrating their specificity to HTLV-1-infected cells that may progress to ATL .

How does ATL21B Antibody differ from other antibodies used in HTLV-1 research?

Unlike antibodies that detect general viral proteins, ATL21B antibody specifically targets antigens associated with ATL development. The antibody demonstrates no cross-reactivity with antigens from other herpesviruses, including Epstein-Barr virus, herpes simplex virus, cytomegalovirus, varicella-zoster virus, herpesvirus saimiri, and Marek disease virus . This high specificity makes it valuable for distinguishing HTLV-1-associated malignancies from other T-cell disorders.

What specimen types are optimal for ATL21B Antibody detection assays?

Peripheral blood mononuclear cells (PBMCs) isolated from whole blood using density-gradient centrifugation (histopaque-1077) provide optimal specimens for ATL21B antibody assays . For long-term studies, PBMCs should be cryopreserved in fetal calf serum with 10% dimethylsulfoxide and stored at −150°C . Fresh samples typically yield better results than archived tissues, though properly preserved specimens maintain antigen integrity for extended periods.

How can researchers optimize ATL21B Antibody signal in experimental systems?

Signal optimization can be achieved by culturing cells in the presence of 5-iodo-2'-deoxyuridine, which has been shown to increase antigen-bearing cells by approximately 5-fold . Flow cytometry analysis should employ appropriate gating strategies focusing on CD3+ CCR4+ CD26− T-cells, which are characteristic of HTLV-1 infection . Additionally, optimizing antibody concentration through titration experiments improves signal-to-noise ratio.

How can ATL21B Antibody be used to assess clonal expansion in HTLV-1 carriers?

ATL21B antibody can be integrated with T-cell receptor (TCR) Vβ subunit diversity analysis to assess clonal expansion in HTLV-1 carriers. Using an 'oligoclonality index' (OCI-flow) approach, researchers can quantify the clonality of infected T-cells (CD3+ CCR4+ CD26−) . This method establishes reference ranges that distinguish between asymptomatic HTLV-1 carriers and those with early ATL development. Carriers with an OCI-flow >0.770 demonstrate significantly higher risk of progression to ATL, with longitudinal studies showing ATL development in this group but not in carriers with lower indices .

What is the role of ATL21B Antibody in monitoring treatment response to ATL therapies?

ATL21B antibody can serve as a biomarker for monitoring response to therapies such as mogamulizumab, an anti-CCR4 monoclonal antibody used in ATL treatment. By tracking changes in antigen-positive cells over time, researchers can assess treatment efficacy in reducing the malignant cell burden. This is particularly valuable in evaluating novel combination therapies, where mogamulizumab has shown improved complete response rates (from 33% to 52%) when added to first-line chemotherapy .

How does ATL21B Antibody detection correlate with proviral load measurement?

ATL21B antibody detection complements proviral load (PVL) measurement, providing additional diagnostic value. High PVL (≥4 copies of HTLV-1/100 PBMCs) is an established risk factor for ATL development, with approximately 20% lifetime risk . Studies have shown that carriers with high antigen expression detected by antibodies like ATL21B also demonstrate higher lymphocyte counts and PVLs, and are more likely to have a family history of ATL . The combination of antibody detection and PVL measurement provides superior risk stratification compared to either method alone.

What methodological considerations are essential when using ATL21B Antibody in multiplex flow cytometry?

When incorporating ATL21B antibody in multiplex flow cytometry panels, researchers must:

  • Carefully select fluorophore combinations to avoid spectral overlap

  • Include appropriate compensation controls for each fluorochrome

  • Implement within-individual comparison methods to account for the natural inequality of distribution of markers in uninfected T cells

  • Apply the formula for expected frequency calculation:

    Expected frequency = (% CD3+ CD4+ CCR4+ CD26−) × (% TCRVβX+ within CD3+) ÷ (% CD3+)

  • Consider a difference of >2% between observed and expected frequencies as significant for primary TCRVβ panels, or >3% for "off-panel" TCRVβ subunits

How can ATL21B Antibody contribute to early detection strategies for ATL?

ATL21B antibody can be incorporated into early detection algorithms for identifying HTLV-1 carriers at highest risk of ATL development. By establishing reference ranges from long-term follow-up cohorts, researchers can identify individuals with antibody profiles similar to those who subsequently develop ATL. In one study, 19% of high proviral load carriers had an OCI-flow in the ATL range (>0.770), and ATL subsequently developed in this group but not in carriers with lower values (p = 0.03, cumulative follow-up 129 person-years) . This approach enables targeted intervention before clinical disease manifestation.

What are the implications of ATL21B Antibody positivity in asymptomatic HTLV-1 carriers?

Asymptomatic HTLV-1 carriers with ATL21B antibody positivity require closer monitoring due to increased risk of progression to ATL. The prevalence of antibodies against ATL-associated antigens varies geographically, being detected in 26% of healthy adults from ATL-endemic areas but rarely in those from non-endemic regions . This geographical variation highlights the importance of considering regional prevalence when interpreting antibody results in risk assessment.

What controls are essential for validating ATL21B Antibody specificity in experimental settings?

Control TypePurposeImplementation
Isotype controlAssess non-specific bindingMatch antibody class, concentration
Negative cell linesConfirm specificityUse non-HTLV-1 infected T-cell lines
Blocking peptideVerify epitope specificityPre-incubate antibody with target peptide
Endemic vs. non-endemic samplesGeographical validationCompare samples from different regions
5-iodo-2'-deoxyuridine inductionPositive control enhancementIncrease antigen expression ~5-fold

How can researchers troubleshoot inconsistent ATL21B Antibody staining patterns?

Inconsistent staining patterns may result from several factors. First, check sample preparation protocols, as improper fixation can alter epitope accessibility. Second, optimize antibody concentration through titration experiments. Third, ensure consistent culture conditions, as antigen expression varies with cell activation status. Fourth, verify instrument calibration for flow cytometry applications. Finally, consider the impact of cryopreservation, as freeze-thaw cycles may affect antigen integrity. Standardization across experiments can be achieved by including reference samples with known staining patterns.

What are the best practices for quantifying ATL21B Antibody binding in research applications?

Quantification of ATL21B antibody binding should employ both frequency and intensity measurements. For flow cytometry, report both percentage of positive cells and mean fluorescence intensity. When analyzing clinical samples, utilize within-individual comparisons to normalize for background variation. For longitudinal studies, implement standardized protocols including:

  • Consistent antibody lots and concentrations

  • Uniform sample processing timeframes

  • Regular calibration of instruments with standardized beads

  • Inclusion of reference samples in each experimental run

  • Analysis of both absolute numbers and percentages of positive cells

How should researchers design experiments integrating ATL21B Antibody with other biomarkers?

When integrating ATL21B antibody with other biomarkers, researchers should adopt a systematic approach that accounts for potential interactions. Begin with single-marker validation, then progress to multiplex applications. Consider the following experimental design:

  • Establish baseline positivity thresholds for each marker independently

  • Perform correlation analyses between ATL21B antibody and other biomarkers such as proviral load

  • Develop multivariate models incorporating clinical parameters (lymphocyte counts, family history)

  • Validate in diverse cohorts (treatment-naïve, post-treatment, different geographical regions)

  • Implement longitudinal sampling to assess temporal relationships between markers

What methodological approach should be used to evaluate ATL21B Antibody in prospective ATL risk assessment studies?

For prospective ATL risk assessment studies utilizing ATL21B antibody, researchers should implement the following methodology:

  • Establish reference ranges using a training cohort of HTLV-1 carriers with known outcomes (minimum 7-10 years follow-up)

  • Include diverse patient populations from endemic and non-endemic regions

  • Collect standardized baseline clinical data (age, sex, lymphocyte count, family history)

  • Perform regular sampling at predetermined intervals (6-12 months)

  • Document all potential confounding factors (intercurrent infections, immunosuppressive therapies)

  • Analyze data using time-to-event statistics (Kaplan-Meier curves, Cox proportional hazards)

  • Validate findings in independent cohorts before clinical implementation

How can researchers standardize ATL21B Antibody assays across multiple research centers?

Standardization of ATL21B antibody assays across research centers requires comprehensive protocol harmonization. Implementation should include:

  • Centralized antibody validation and lot testing

  • Standardized sample collection, processing, and storage protocols

  • Calibrated flow cytometers with matched laser configurations and detector settings

  • Distribution of reference samples and calibration standards

  • Regular proficiency testing among participating laboratories

  • Centralized data analysis or standardized analysis templates

  • Regular quality control assessments and protocol updates

  • Detailed documentation of any center-specific modifications

This standardized approach enables reliable multi-center studies essential for validating the clinical utility of ATL21B antibody in ATL research and patient management.

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