ATL55 Antibody

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Description

Introduction to ATL55 Antibody

ATL55 Antibody is a polyclonal antibody targeting the ATL55 protein in Arabidopsis thaliana (Mouse-ear cress). It is commercially available for research applications, with product code CSB-PA881848XA01DOA and UniProt ID Q9LX93 .

Key Research Findings

As of March 2025, no peer-reviewed studies investigating ATL55 Antibody’s functional or mechanistic roles in Arabidopsis thaliana have been published. The antibody’s primary use appears confined to basic research applications, such as:

  • Protein localization studies.

  • Interaction assays (e.g., co-immunoprecipitation).

Comparative Analysis with Related Antibodies

ATL55 belongs to a family of Arabidopsis-targeting antibodies. A subset of related products includes:

AntibodyTargetUniProt IDSize
ATL60ATL60P0C0352 ml / 0.1 ml
ATL53ATL53P0C0412 ml / 0.1 ml
ATL50ATL50Q9FHG82 ml / 0.1 ml

These antibodies share similar production and validation pipelines .

Availability and Usage Notes

  • Storage: Stable at -20°C in PBS with 0.02% sodium azide and 50% glycerol .

  • Recommended Dilution: Likely follows standard protocols (e.g., 1:500–1:1000 for WB), though titration is advised for optimal results .

Limitations and Future Directions

Current limitations include:

  • Lack of published data on ATL55’s biological role.

  • Absence of cross-reactivity or functional studies in non-plant systems. Future research should prioritize structural characterization of ATL55 and its interactions in plant signaling pathways.

Product Specs

Buffer
Preservative: 0.03% ProClin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (made-to-order)
Synonyms
ATL55; RING1; At5g10380; F12B17_270; E3 ubiquitin-protein ligase RING1; RING-H2 finger protein ATL55; RING-type E3 ubiquitin transferase ATL55
Target Names
ATL55
Uniprot No.

Target Background

Function

ATL55 is an E3 ubiquitin-protein ligase implicated in the positive regulation of programmed cell death (PCD) by promoting the degradation of PCD inhibitors. It may also play a role in the early stages of plant defense signaling pathways and undergoes auto-ubiquitination.

Gene References Into Functions
  1. A novel mechanistic pathway has been identified where AtRING1a and AtRING1b repress KNOX-I expression to terminate floral stem cell activity and establish carpel cell fate. (PMID: 28007029)
  2. RING1, an E3 ubiquitin ligase localized to plasma membrane lipid rafts, shows increased expression in response to fumonisin B1 and biotic stresses that induce programmed cell death. (PMID: 18643987)
Database Links

KEGG: ath:AT5G10380

STRING: 3702.AT5G10380.1

UniGene: At.1824

Protein Families
RING-type zinc finger family, ATL subfamily
Subcellular Location
Cell membrane; Single-pass membrane protein.

Q&A

What is ATL-55 in leukemia research contexts?

ATL-55(+) appears to be a cell line used in Adult T-cell Leukemia research. These cells have been utilized in studies examining the efficacy of survivin suppressants like YM155. When treating ATL-43b and ATL-55(+) cells with different concentrations of YM155 for 48 hours, researchers can evaluate apoptotic effects and potential therapeutic applications . This cell line serves as an important model for investigating molecular mechanisms underlying ATL pathogenesis and for screening novel therapeutic agents.

What characterizes Adult T-cell Leukemia and what causes it?

Adult T-cell Leukemia (ATL) is an aggressive malignancy characterized by clonal expansion of CD4+CD25+ T lymphocytes. The etiologic agent is human T-cell lymphotropic virus type 1 (HTLV-1), a type C retrovirus endemic in Central and Southern Africa, southern Japan, the Caribbean basin, and northern South America . Less than 5% of individuals infected with HTLV-1 develop ATL. Current research indicates there is no accepted curative therapy for ATL, though combination approaches show promise in experimental models .

How are ATL-associated antigens detected in clinical specimens?

ATL-associated antigens (ATLA) can be detected using indirect immunofluorescence (IF) testing on collected lymphocytes. The standard protocol involves isolating lymphocytes from concentrated red blood cells (CRC) and culturing them in vitro with and without phytohemagglutinin (PHA) for approximately 10 days . The expression of ATL virus (ATLV) positive lymphocytes is then analyzed using mouse monoclonal antibody ATL-19, which reacts specifically to p19 core protein of ATLV . Research indicates that 97% of ATLA-Ab positive concentrated red blood cells demonstrate ATLV positive lymphocytes after culture with PHA .

What immunological parameters best predict ATL development in HTLV-1 carriers?

Recent research demonstrates that combining anti-HTLV-1 antibody profiles with proviral load measurements provides effective prediction of disease development. Specifically, profiling humoral immunity to several HTLV-1 antigens (Gag, Env, and Tax) together with proviral load measurements can efficiently categorize ATL and HTLV-1-associated myelopathy (HAM) cases into distinct risk groups . This combined biomarker approach has successfully identified carriers harboring driver mutations of ATL even when the clonality of HTLV-1-infected cells remains polyclonal, consistent with early-stage leukemogenesis .

How do anti-Gag immune responses correlate with disease control in ATL?

Anti-Gag immune responses show significant correlation with disease control. Research has revealed that anti-Gag proteins are important predictors for identifying high-risk groups among HTLV-1 carriers . Consistent with this finding, anti-Gag cytotoxic T lymphocytes (CTLs) were found to increase in patients who received hematopoietic stem cell transplantation and achieved remission, indicating the significance of anti-Gag CTLs in disease control . This suggests that monitoring anti-Gag immune responses may provide valuable insights into therapeutic efficacy and disease progression.

What experimental approaches effectively measure therapeutic antibody efficacy against ATL?

Effective experimental approaches include both in vitro and in vivo models. In vitro studies often employ ATL cell lines like ATL-55(+) to assess apoptotic effects of potential therapeutic agents . For in vivo efficacy, murine models of human ATL (such as MET-1) provide valuable insights. Key measurements include serum soluble IL-2Rα (sIL-2Rα) levels as a biomarker of disease burden and survival duration of tumor-bearing mice . Combination approaches, such as YM155 with alemtuzumab, have demonstrated markedly additive antitumor activity by significantly lowering serum sIL-2Rα levels and improving survival compared to monotherapy with either agent alone .

What molecular markers should be targeted when investigating ATL pathogenesis?

Several key molecular markers warrant investigation in ATL research:

Molecular MarkerSignificance in ATLDetection Method
CC chemokine receptor 4 (CCR4)Hallmark of ATL with recurrent mutationsGene expression profiling, targeted sequencing
HTLV-1 proviral loadCorrelates with disease riskqPCR
Gag, Env, and Tax antibodiesPredictive of disease developmentSerological profiling
CD49e (Integrin α5)Expressed on T cells related to cell adhesionFlow cytometry with anti-CD49e antibodies

Molecular analyses reveal that high expression of CC chemokine receptor 4 (CCR4) is a hallmark of ATL, with recurrent somatic mutations consisting of nonsense or frameshift mutations that truncate the coding region at specific positions (C329, Q330, or Y331) . Additionally, the CCR4-Q330 nonsense isoform demonstrates gain-of-function properties, increasing cell migration toward CCR4 ligands and enhancing PI(3) kinase/AKT activation .

How can researchers distinguish between viral and cellular antigenic markers in ATL?

Distinguishing between viral and cellular antigenic markers requires specific analytical approaches. For viral antigens, immunoprecipitation followed by SDS-polyacrylamide gel electrophoresis can identify HTLV-1-specific polypeptides. Studies have shown that anti-ATLA-positive sera react specifically with four polypeptides with molecular weights of 70,000, 53,000, 36,000, and 24,000 daltons . For cellular markers like integrin α5 chain (CD49e), specific monoclonal antibodies such as clone IIA1 can be used to detect expression on T cells, B cells, and other relevant cell types . Proper controls are essential, including ATLA-negative T-cell lines (Molt-4 and HPB-ALL) to confirm specificity .

How should conflicting results between cellular and humoral immunity markers be interpreted?

When faced with conflicting results between cellular and humoral immunity markers, researchers should consider:

  • The temporal relationship between markers, as cellular and humoral responses may peak at different times post-infection or during disease progression

  • The compartmentalization of immune responses, as blood measurements may not reflect tissue-level activity

  • The functional significance of each marker (e.g., anti-Gag CTLs have demonstrated importance for disease control)

  • The integrated approach of combining multiple markers (antibody profiles plus proviral load) to improve predictive accuracy

Research suggests that anti-HTLV-1 antibodies combined with proviral load measurements provide more reliable prediction than either parameter alone, even when individual markers show conflicting patterns .

What statistical approaches are most appropriate for analyzing combination therapy effects in ATL models?

Statistical approaches for analyzing combination therapy effects should include:

  • Comparison of single-agent vs. combination treatment groups using appropriate statistical tests (e.g., analysis of variance followed by post-hoc tests)

  • Survival analysis using Kaplan-Meier curves and log-rank tests to assess differences in survival outcomes

  • Assessment of biomarker changes (e.g., serum sIL-2Rα levels) using repeated measures analyses

  • Calculation of combination indices to determine if effects are additive, synergistic, or antagonistic

In the study of YM155 and alemtuzumab combination, researchers demonstrated markedly additive antitumor activity by showing the combination significantly lowered serum sIL-2Rα levels compared with monotherapy with either YM155 (P < .001) or alemtuzumab (P < .05) . Notably, all mice receiving the combination therapy survived and remained tumor-free more than 6 months after treatment .

How can researchers distinguish driver mutations from passenger mutations in ATL genomics?

Distinguishing driver from passenger mutations requires functional validation approaches:

  • Expression of mutant proteins in appropriate cellular models to assess phenotypic effects

  • Analysis of downstream signaling pathway activation (e.g., PI(3) kinase/AKT pathway)

  • Cell migration or proliferation assays to determine functional consequences

  • Correlation with clinical outcomes in patient cohorts

Research on CCR4 mutations in ATL demonstrates this approach. The CCR4-Q330 nonsense isoform was functionally validated as gain-of-function because it increased cell migration toward CCR4 ligands CCL17 and CCL22, partly by impairing receptor internalization . This mutant also enhanced PI(3) kinase/AKT activation after receptor engagement by CCL22 in ATL cells, providing strong evidence for its driver role in pathogenesis .

What are the most promising combination therapies targeting ATL?

Current research indicates that combining targeted agents with monoclonal antibodies shows particular promise. The combination of YM155 (a selective survivin suppressant) with alemtuzumab (anti-CD52 monoclonal antibody) demonstrated markedly additive antitumor activity in preclinical models . This has supported clinical trial development (registered at www.clinicaltrials.gov as #NCT00061048) . Other emerging approaches include combinations targeting viral antigens and dysregulated signaling pathways, particularly those involving CCR4 mutations that enhance PI(3) kinase/AKT activation .

How might prophylactic approaches be developed for high-risk HTLV-1 carriers?

Development of prophylactic approaches for high-risk HTLV-1 carriers could leverage recent advances in biomarker identification. By combining anti-HTLV-1 antibody profiles (particularly anti-Gag responses) with proviral load measurements, researchers can now identify carriers at elevated risk for ATL development . These individuals could be candidates for prophylactic interventions, potentially including:

  • Enhanced surveillance protocols

  • Early intervention with antiviral strategies

  • Immune-based approaches to boost anti-Gag CTL responses, which correlate with disease control

  • Targeted inhibition of pathways activated by early driver mutations

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