ATL76 Antibody

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Description

Contextual Clues from ATL Research

The term "ATL" in the provided search results consistently refers to adult T-cell leukemia, a malignancy linked to human T-cell leukemia virus type 1 (HTLV-1). Antibodies studied in this context include:

  • Anti-MT-1 antigen antibodies: Detected in 100% of ATL patients and 26% of healthy adults in endemic areas .

  • Anti-CADM1 and anti-CD7 antibodies: Used for flow cytometric profiling to diagnose and prognosticate ATL .

  • Anti-CCR4 antibodies: Associated with HTLV-1-infected T cells and ATL progression .

No studies mention an antibody designated "ATL76."

Potential Misinterpretations

The query may conflate terminology from ATL research:

  • MT-1 cell line: A T-cell line from an ATL patient used to identify ATL-associated antigens .

  • Immunophenotypic markers: CD4, CCR4, CD26, and CD7 are critical for distinguishing ATL cells from normal T cells .

  • Antibody validation frameworks: Protocols for ensuring specificity in Western blotting or flow cytometry .

None of these align with "ATL76" as a unique entity.

Antibody Naming Conventions

Antibodies are typically named based on:

  • Target antigen (e.g., anti-CD20 for rituximab).

  • Clone designation (e.g., "clone 4C7").

  • Research context (e.g., "anti-ATLA" for ATL-associated antigens).

The absence of "ATL76" in major databases (PubMed, PMC, Sigma-Aldrich, Biocompare) suggests it is either:

  • A non-standard or internal laboratory designation.

  • A hypothetical or developmental antibody not yet published.

  • A typographical error (e.g., "ATL7" or "ATL-76" may refer to cell lines or biomarkers).

Recommendations for Further Inquiry

To resolve this ambiguity:

  1. Verify the correct nomenclature with the source of the term "ATL76 Antibody."

  2. Explore patent databases or preclinical trial registries for unpublished data.

  3. Consult recent literature on ATL biomarkers, as antibody discovery in this field is active .

Key Research Gaps

ParameterKnown Data for ATL-Associated AntibodiesStatus of "ATL76"
Target specificityMT-1 antigen, CADM1, CCR4, CD7 Not identified
Clinical utilityDiagnosis, prognosis, therapy No data
Commercial availabilityAnti-CADM1, anti-CCR4 No listings found

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
ATL76; At1g49210; F27J15.3; E3 ubiquitin-protein ligase ATL76; RING-H2 finger protein ATL76; RING-type E3 ubiquitin transferase ATL76
Target Names
ATL76
Uniprot No.

Target Background

Function
ATL76 Antibody is an E3 ubiquitin-protein ligase capable of catalyzing polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.
Database Links

KEGG: ath:AT1G49210

STRING: 3702.AT1G49210.1

UniGene: At.38277

Protein Families
RING-type zinc finger family, ATL subfamily
Subcellular Location
Membrane; Single-pass membrane protein.

Q&A

What are the primary target antigens for antibody development in ATL research?

The primary targets for antibody development in ATL research include the interleukin-2 (IL-2) receptors, specifically CD25 and CD122. These receptors mediate the progression of Adult T-cell Leukemia. While CD25 has been extensively studied for its role in regulating ATL in murine models, CD122 is also critical since IL-15 may regulate ATL through this shared co-receptor. Preclinical studies demonstrate that blocking these receptors with monoclonal antibodies (mAbs) can prevent the progression of T-cell large granular lymphocyte leukemia .

How are human monoclonal antibodies produced for ATL research applications?

Human monoclonal antibodies for ATL research are produced through in vitro technologies using human peripheral blood lymphocytes (PBLs). To overcome tolerance to self-antigens like CD25 and CD122, researchers modify these antigens before incubating them with PBLs isolated from healthy volunteers. The process involves:

  • Initiating a primary antibody response by exposing PBLs to modified antigens

  • Inducing class switching through controlled mixtures of cytokines and growth factors

  • Generating both IgM and IgG antibodies to the target antigens

  • Creating human hybridomas that secrete fully human antibodies against the targets

This methodology enables de novo antibody synthesis and class switching in culture systems, offering advantages over previously available mouse monoclonal antibodies.

What biomarkers are relevant when assessing ATL progression for antibody targeting?

Proteomic profiling has identified several protein biomarkers that distinguish between HTLV-1 carriers (ACs) and ATL patients. The most significant biomarkers include members of the TNF receptor superfamily, specifically:

BiomarkerAC Range (ng/mL)Acute ATL Range (ng/mL)Remission Range (ng/mL)
sTNFR21-910-602-8
sTNFR1Lower levelsElevatedReturn to baseline
sTNFRSF8Lower levelsElevatedReturn to baseline

Among these, sTNFR2 shows the most pronounced elevation in acute ATL patients—approximately 10 times higher than levels in asymptomatic carriers and healthy controls . These biomarkers can guide antibody development by identifying optimal targeting strategies.

How should researchers design validation studies for new anti-ATL antibodies?

Validation studies for new anti-ATL antibodies should follow a multi-step process:

  • In vitro characterization: Determine antibody class, binding affinity, and ability to induce antibody-dependent cell cytotoxicity (ADCC)

  • Functional screening: Assess the antibody's ability to block target receptor function

  • Flow cytometric analysis: Evaluate binding to target cells using markers such as CADM1 (for aggressive ATL) and CD7 (downregulation associated with clonal expansion of HTLV-1-infected cells)

  • Immunohistochemical validation: Confirm antibody binding to atypical lymphoid cells and tissue infiltrates from ATL patients

  • Plasma level correlation: Compare soluble receptor levels with cell surface expression

This comprehensive approach ensures that antibodies selected for further development have both the desired binding characteristics and functional effects on ATL pathogenesis.

What methods are most effective for measuring antibody-dependent cell cytotoxicity (ADCC) in ATL antibody research?

When evaluating ADCC in ATL antibody research, researchers should consider these methodological approaches:

  • Cell-based assays: Using target cells expressing CD25 or CD122 and effector cells (typically NK cells) to measure cytotoxicity

  • Flow cytometry-based methods: Quantifying cell death through markers like Annexin V and propidium iodide

  • Chromium release assays: Traditional method measuring the release of 51Cr from labeled target cells

  • Bioluminescence-based assays: Using luciferase-expressing target cells for real-time monitoring

  • ELISA-based detection: Measuring the release of intracellular components like lactate dehydrogenase

ADCC evaluation is particularly important for ATL antibody research since current anti-CD25 mAbs have limited ADCC effector function. Developing fully human mAbs that both inhibit receptor function and activate ADCC could significantly improve treatment efficacy for ATL .

How can researchers overcome tolerance to self-antigens when developing fully human antibodies against ATL targets?

Overcoming tolerance to self-antigens like CD25 and CD122 requires sophisticated approaches:

  • Antigen modification: Altering the structure of self-antigens to make them appear foreign to the immune system while maintaining critical epitopes

  • Controlled immunization conditions: Using specific cytokine and growth factor mixtures to create an optimal environment for B cell activation and antibody production

  • Class-switching induction: Applying specific signals to promote development of IgG antibodies rather than only IgM

  • Hybridoma selection: Carefully screening for clones that produce high-affinity antibodies with desired functional characteristics

  • Engineering approaches: Using directed evolution or computational design to enhance antibody characteristics

These methods have successfully generated fully human IgM and IgG antibodies to both CD25 and CD122 human antigens, demonstrating that both de novo antibody synthesis and class switching can be achieved in vitro.

What are the correlations between plasma biomarker levels and cell surface expression in ATL, and how might this inform antibody development?

Research has revealed important correlations between soluble receptor levels in plasma and cell surface expression in ATL:

  • Flow cytometric analysis shows higher cell surface expression of TNFR2 in ATL patients compared to asymptomatic carriers

  • Soluble TNFR2 (sTNFR2) concentration levels correlate positively with cell surface TNFR2 expression

  • Immunohistochemical analysis confirms TNFR2 positivity in atypical lymphoid cells and skin infiltrates from lymphoma ATL patients

  • The relationship appears strongest in acute ATL, where sTNFR2 levels are most distinctly elevated (10-60 ng/mL)

  • In remission, both soluble and cell surface levels return to ranges similar to carrier states

These correlations suggest that targeting receptors with high surface expression and corresponding elevated soluble forms may be particularly effective. Antibody development could focus on epitopes that remain accessible despite receptor shedding or on dual targeting of both membrane-bound and soluble forms.

How do different ATL subtypes affect antibody binding and efficacy, and what methodological approaches can address these variations?

Different ATL subtypes show varying characteristics that affect antibody binding and efficacy:

  • Acute ATL: Characterized by very high sTNFR2 levels (10-60 ng/mL) and corresponding high cell surface expression, making it potentially more responsive to antibody therapies targeting TNFR2

  • Lymphoma ATL: Shows positive TNFR2 immunostaining in tumor cells and skin infiltrates, but more variable circulating sTNFR2 levels compared to acute ATL

  • Chronic and smoldering ATL: May show intermediate biomarker patterns requiring different targeting strategies

Methodological approaches to address these variations include:

  • Developing antibody panels targeting multiple epitopes or antigens

  • Creating bispecific antibodies that can engage two different targets simultaneously

  • Employing different antibody isotypes with varying effector functions for different ATL subtypes

  • Using combination therapies with antibodies targeting complementary pathways

  • Implementing patient stratification based on biomarker profiles before antibody therapy

What statistical methods are most appropriate for analyzing antibody efficacy data in ATL research?

When analyzing antibody efficacy data in ATL research, researchers should employ these statistical approaches:

  • Welch's t-test: Useful for comparing protein levels between groups (e.g., asymptomatic carriers vs. ATL patients, or ATL patients vs. those in remission)

  • Receiver Operating Characteristic (ROC) curve analysis: Calculate the area under the curve (AUC) to determine discrimination capacity of antibody binding or biomarker levels

  • Box-and-whisker and dot plots: Effective visualization methods for illustrating elevations and decreases in protein levels across different disease states

  • Pathway enrichment analysis: Using gene set enrichment analysis (GSEA) with appropriate false discovery rate cutoffs to identify significantly enriched pathways

  • Gene ontology analysis: To determine overrepresented pathways in ATL states using extremely significant proteins

These statistical approaches enable robust comparison of antibody efficacy across different experimental conditions and patient populations.

How can researchers reconcile contradictory data when antibody binding patterns differ between in vitro assays and clinical samples?

Reconciling contradictory data between in vitro assays and clinical samples requires systematic investigation:

  • Evaluate sample handling differences: Clinical samples may undergo processing steps that alter antigen presentation compared to controlled in vitro conditions

  • Consider microenvironment effects: The tumor microenvironment in vivo may modify receptor expression or accessibility

  • Assess antigen heterogeneity: Patient samples may exhibit greater antigen heterogeneity than cell lines

  • Examine post-translational modifications: Different patterns of glycosylation or other modifications may occur in patient samples

  • Investigate receptor shedding: Soluble forms of receptors may interfere with antibody binding in ways not observed in vitro

  • Analyze tissue-specific expression patterns: Compare expression and binding in different tissue compartments (blood, bone marrow, lymph nodes)

To address these contradictions methodologically, researchers should:

  • Use multiple complementary techniques (flow cytometry, immunohistochemistry, ELISA)

  • Include appropriate controls for each sample type

  • Direct sequence antigens from clinical samples to identify variants

  • Develop assays that better mimic in vivo conditions

What novel approaches might enhance the specificity and efficacy of antibodies targeting ATL-associated antigens?

Several innovative approaches could enhance antibody specificity and efficacy:

  • Bispecific antibody engineering: Developing antibodies that simultaneously target CD25 and CD122 or other complementary targets to improve specificity for ATL cells

  • Antibody-drug conjugates (ADCs): Combining the targeting specificity of anti-ATL antibodies with potent cytotoxic payloads to enhance therapeutic efficacy

  • Enhanced ADCC optimization: Engineering antibody Fc regions to maximize engagement with effector cells and improve ADCC activity

  • Glycoengineering: Modifying antibody glycosylation patterns to enhance effector functions

  • Combination targeting: Developing antibody cocktails targeting multiple ATL biomarkers simultaneously to address heterogeneity in antigen expression

  • Nanobody development: Creating smaller antibody fragments with improved tissue penetration for accessing ATL cells in various compartments

How might antibody engineering approaches be applied to address the challenges of targeting heterogeneous ATL cell populations?

Antibody engineering approaches for heterogeneous ATL populations include:

  • Multi-epitope targeting: Developing antibodies that recognize multiple epitopes on a single target to overcome antigen variation

  • Affinity maturation: Enhancing binding affinity through directed evolution to improve recognition of low-expression targets

  • Fc engineering: Modifying the antibody constant region to optimize effector functions based on ATL subtype characteristics

  • pH-dependent binding: Creating antibodies with enhanced binding in the tumor microenvironment

  • Tissue-penetrating modifications: Engineering smaller antibody formats or adding tissue-penetrating peptides to access sanctuary sites

  • Combinatorial targeting: Developing strategies that require recognition of multiple markers to trigger effector functions, improving specificity for ATL cells

Implementation of these approaches could significantly improve outcomes for patients with different ATL subtypes by addressing the inherent heterogeneity of the disease.

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