BBD2 Antibody

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Description

Overview of BRD2 Antibody

BRD2 antibodies are immunological tools designed to detect and study the BRD2 protein, a transcriptional regulator involved in chromatin remodeling, immune responses, and oncogenesis. These antibodies are critical for elucidating BRD2's role in cellular processes and disease mechanisms.

Biological Functions of BRD2

BRD2 is a multifunctional epigenetic reader with roles in transcriptional activation, DNA repair, and immune regulation.

Key Roles of BRD2

FunctionMechanismDisease Relevance
Transcriptional RegulationBinds acetylated histones to recruit transcription factors and chromatin remodelers Cancer, autoimmune disorders
Antibody Class SwitchingFacilitates DNA repair during B-cell class switch recombination (CSR) via NHEJ Immunodeficiency, lymphomas
Immune ModulationInteracts with STAT3/5 to regulate Th17 differentiation and inflammatory responses Autoimmunity, infections
Metabolic RegulationEnhances insulin signaling and glucose metabolism Metabolic syndromes

Research Applications of BRD2 Antibodies

BRD2 antibodies are widely used to investigate its molecular interactions and therapeutic potential.

Select Studies Using BRD2 Antibodies

  1. Cancer Research

    • BRD2 maintains oncogenic transcription programs in hematological malignancies. Inhibiting BRD2 reduces tumor growth in preclinical models .

    • BRD2 collaborates with BRD4 to stabilize cohesion loader NIPBL at DNA break sites, ensuring efficient repair during CSR .

  2. Autoimmune Diseases

    • Autoantibodies against BRD2 are detected in systemic sclerosis (SSc), correlating with interstitial lung disease (ILD) and inflammatory myopathy .

    • BRD2-selective inhibitors show efficacy in collagen-induced arthritis models by suppressing inflammatory gene induction .

  3. Immunology

    • BRD2 deficiency impairs S-region synapsis and increases aberrant DNA repair during CSR, highlighting its role in B-cell immunity .

BRD2 as a Therapeutic Target

ApproachMechanismOutcome
Pan-BET InhibitorsBlock both BD1 and BD2 domains of BRD2/4Effective in cancer but with systemic toxicity
BD2-Selective InhibitorsTarget BD2 to suppress inflammationReduced toxicity; efficacy in autoimmune models
Monoclonal AntibodiesNeutralize BRD2 in autoimmune contextsPotential for treating SSc and ILD

Challenges and Future Directions

  • Specificity: BRD2 antibodies must distinguish between BD1 and BD2 domains for selective inhibition .

  • Therapeutic Optimization: Balancing efficacy and toxicity in BD2-targeted therapies remains a hurdle .

  • Biomarker Potential: BRD2 autoantibodies in SSc could serve as diagnostic markers for ILD and myopathy .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
BBD2 antibody; At1g19660 antibody; F14P1.1Bifunctional nuclease 2 antibody; AtBBD2 antibody; EC 3.1.-.- antibody
Target Names
BBD2
Uniprot No.

Target Background

Function
BBD2 Antibody is a bifunctional nuclease possessing both RNase and DNase activities. It plays a crucial role in the basal defense response of organisms. BBD2 Antibody participates in the deposition of callose derived from abscisic acid following infection by a necrotrophic pathogen.
Database Links

KEGG: ath:AT1G19660

STRING: 3702.AT1G19660.1

UniGene: At.16184

Protein Families
Bifunctional nuclease family
Subcellular Location
Nucleus.

Q&A

What is the beta-2-Adrenergic Receptor and what applications do antibodies targeting this receptor have in research?

The beta-2-Adrenergic Receptor is a G protein-coupled receptor involved in various physiological processes. Antibodies targeting this receptor are essential reagents for detecting specific proteins and biomarkers across multiple experimental applications including:

  • Flow cytometry

  • Western blotting

  • Immunohistochemistry (IHC)

  • Immunocytochemistry (ICC)

  • Immunofluorescence

  • Immunoprecipitation

These antibodies are available in various formats (unconjugated, biotin, FITC, HRP, Alexa) and can demonstrate reactivity across multiple species including human, mouse, and rat . When selecting these antibodies, researchers should consider specific validation data, published figures, and independent reviews to ensure optimal experimental outcomes.

What is HBD-2 and why is it significant in antiviral research?

Human beta-defensin 2 (HBD-2) is an antimicrobial peptide naturally found in the mucosa of the oral cavity, nares, and upper airway. HBD-2 has been identified as a potential antiviral agent, particularly against coronaviruses. Research demonstrates that HBD-2 binds to the receptor-binding domain (RBD) of SARS-CoV-2, preventing it from binding to ACE2-expressing cells, thus blocking viral entry .

HBD-2's significance in antiviral research stems from:

  • Its natural presence at primary sites of respiratory virus entry

  • Specific binding to viral attachment proteins

  • Potential for development as a therapeutic agent with minimal immunological response

  • Demonstrated efficacy against coronaviruses in various experimental systems

Notably, patients infected with SARS-CoV-2 have shown lower mRNA levels of several defensins including HBD-2, suggesting potential therapeutic applications .

What is BD2 in the context of research funding and what biological mechanisms does it support investigating?

BD2 (Breakthrough Discoveries for thriving with Bipolar Disorder) is a research grant program designed to advance understanding of bipolar disorder. The program aims to fund multidisciplinary teams examining:

  • Genetic mechanisms

  • Molecular pathways

  • Cellular processes

  • Neural circuit functions

  • Behavioral mechanisms

The BD2 initiative provides up to $1.5 million per year for three years (totaling $4.5 million per award) to teams of three to five scientists focused on investigating causal mechanisms underlying bipolar disorder . This funding structure is explicitly designed to promote team science, open science principles, and innovative approaches to understanding a complex mental disorder.

What methodological approaches confirm the interaction between HBD-2 and SARS-CoV-2, and what are the quantitative binding parameters?

The interaction between HBD-2 and SARS-CoV-2 has been confirmed through multiple complementary methodological approaches:

MethodologyKey FindingReference
In-silico docking & molecular dynamicsHBD-2 binds to the receptor-binding motif (RBM) of SARS-CoV-2 RBD
Surface plasmon resonance (SPR)Binding affinity (KD) = 1.8 ± 1.1 μM
Functional ELISA assaySpecific binding of rhBD-2 to immobilized rRBD
Immunoprecipitation/Western blottingSignificant binding of hBD-2 to His-RBD
CoV-2 spike-pseudotyped luciferase assayIC50 = 2.8 ± 0.4 μM for inhibition of viral entry

Importantly, the specificity of HBD-2's antiviral activity was demonstrated by its inhibition of CoV-2 spike-mediated infection while showing no inhibition of VSVG-pseudotyped virus infection, confirming its specific targeting of the CoV-2 spike protein rather than general membrane fusion inhibition .

What mechanisms underlie antibody-induced receptor degradation and how can this knowledge inform therapeutic antibody design?

Research on antibody-induced receptor degradation, particularly with HER-2/ErbB-2 antibodies, reveals a specific molecular pathway:

  • Antibody binding to the receptor initiates poly-ubiquitination

  • This process requires recruitment of the c-Cbl ubiquitin ligase

  • Recruitment occurs specifically at tyrosine 1112 of ErbB-2

  • Mutation of this tyrosine residue significantly retards antibody-induced degradation

This mechanistic understanding provides critical insights for therapeutic antibody design by suggesting that effective antibodies may function by directing their targets to c-Cbl-regulated proteolytic pathways . When designing therapeutic antibodies against overexpressed receptors (such as in cancer), researchers should consider:

  • Epitope selection that promotes receptor ubiquitination

  • Verification of c-Cbl recruitment capability

  • Confirmation of accelerated receptor degradation following antibody binding

  • Structure-activity relationships that optimize these degradation-promoting properties

How might HBD-2's antiviral properties be leveraged for therapeutic development?

HBD-2's demonstrated ability to block viral entry suggests several potential therapeutic development pathways:

  • Direct application: Administration of recombinant HBD-2 or synthetic derivatives at vulnerable mucosal sites could provide protection against initial infection. Maximum inhibition of spike-mediated pseudoviral infection (80%) was achieved at 12.8 μM concentration .

  • Development of mimetics: Creation of smaller peptides derived from HBD-2 that maintain binding affinity but may have improved stability or delivery characteristics.

  • Combination approaches: HBD-2 could be used in combination with other antiviral strategies, targeting different aspects of the viral lifecycle.

  • Prophylactic applications: Given HBD-2's natural presence in upper airway mucosa, preventative administration could be particularly effective for individuals at high risk of exposure.

  • Mucosal delivery systems: Development of specialized delivery systems targeting the nasopharyngeal mucosa could optimize biodistribution to sites of initial viral entry.

The research suggests particular promise for HBD-2 as a preventative agent at mucosal surfaces, given its natural role in protecting the oral cavity and upper airway .

What are critical validation parameters for antibodies in research applications?

When validating antibodies for research use, particularly beta-2-Adrenergic Receptor antibodies, researchers should systematically assess:

Validation ParameterDescriptionImportance
Target specificityDemonstration of selective binding to intended targetEssential to avoid misinterpretation of results
Cross-reactivityTesting against related proteins/targetsIdentifies potential false positives
Species reactivityConfirmation of activity across relevant speciesEnsures applicability to model systems
Application performanceValidation in specific applications (WB, IHC, flow, etc.)Not all antibodies work in all applications
Literature citationsEvidence of successful use in published researchProvides confidence in reliability
Published figuresVisual confirmation of expected resultsAllows comparison to expected patterns
Independent reviewsFeedback from other researchersUnbiased assessment of performance

Comprehensive validation data should be available from suppliers and should be carefully evaluated before selecting antibodies for critical experiments .

What experimental design considerations are critical when evaluating inhibitory effects of compounds on viral entry?

When designing experiments to evaluate inhibitory effects on viral entry, as demonstrated in the HBD-2 studies, researchers should incorporate:

This experimental framework enables robust assessment of entry inhibitor specificity, potency, and mechanism of action.

What techniques are available for assessing protein-protein interactions in antibody research, and what are their relative advantages?

Multiple complementary techniques are available for assessing protein-protein interactions, each with specific advantages:

TechniqueDescriptionAdvantagesApplication in Research
Surface Plasmon Resonance (SPR)Optical technique measuring binding kinetics in real-timeProvides association/dissociation rates and affinity constants; label-free detectionUsed to determine HBD-2:RBD binding affinity (KD ∼ 1.8 μM)
Microscale Thermophoresis (MST)Measures changes in movement of fluorescently labeled molecules in temperature gradientsRequires minimal sample amounts; works in complex solutionsMentioned as complementary to SPR for HBD-2 binding studies
ELISAAntibody-based detection of immobilized protein complexesHigh-throughput; quantitative; widely accessibleConfirmed specific binding of rhBD-2 to immobilized rRBD
Immunoprecipitation/Western blottingCapture of protein complexes followed by detectionConfirms interactions in solution; identifies complex componentsDemonstrated HBD-2 binding to His-tagged RBD
In silico molecular dynamicsComputational simulation of protein interactionsProvides atomic-level details; can predict binding sitesShowed stability of HBD-2:RBD complex over 500 ns

When investigating complex biological systems, combining multiple techniques provides the most robust characterization of protein-protein interactions, as demonstrated in the HBD-2:SARS-CoV-2 RBD studies .

How can researchers optimize multidisciplinary approaches in complex biological mechanism studies?

The BD2 research program emphasizes a multidisciplinary approach to understanding complex disorders, providing a framework applicable to other research areas:

  • Team composition: Assemble teams of three to five scientists representing diverse disciplines and experimental approaches. This ensures complementary expertise and methodological diversity .

  • Strategic alignment: Develop specific aims with clear milestones that allow scientific leadership to identify potential synergies across research projects .

  • Collaborative flexibility: Design research plans that allow for adaptation and new collaborations as discoveries emerge. The BD2 model includes additional collaborative grants ($100,000-$250,000) to act upon new discoveries .

  • Resource sharing: Establish protocols for sharing resources, data, and progress throughout the funding period to accelerate collective progress .

  • Model system diversity: Incorporate multiple experimental systems (animal models, cell models including iPSCs and organoids, human subjects) to strengthen translational relevance .

This approach is particularly valuable for studying complex biological mechanisms where single-discipline approaches have historically yielded limited progress.

What controls are necessary when evaluating antibody specificity in complex biological systems?

When evaluating antibody specificity, particularly in studies of receptors like beta-2-Adrenergic Receptor or therapeutic antibodies to HER-2/ErbB-2, essential controls include:

  • Negative controls:

    • Isotype-matched control antibodies

    • Testing in cells/tissues not expressing the target

    • Competitive blocking with the purified target antigen

    • Testing in knockout/knockdown systems

  • Positive controls:

    • Known modulators of the target (agonists/antagonists)

    • Reference antibodies with established specificity

    • Recombinant expression systems with controlled target levels

  • Mechanistic controls:

    • When studying degradation pathways, include controls for general protein turnover

    • For ubiquitination studies, monitor total protein levels and include proteasome inhibitors

    • Point mutations at key residues (e.g., Y1112 in ErbB-2) to confirm specific mechanisms

  • Cross-reactivity assessment:

    • Testing against structurally related family members

    • Evaluation across relevant species to confirm evolutionary conservation

What are promising approaches for developing HBD-2-based therapeutics against viral pathogens?

Based on the research findings, several promising approaches for HBD-2-based therapeutic development include:

  • Structure-activity optimization: Using the molecular understanding of HBD-2:RBD interaction to design modified peptides with enhanced binding affinity or stability while maintaining specificity.

  • Mucosal delivery systems: Development of specialized formulations (nasal sprays, inhalation devices) to deliver HBD-2 or derivatives to vulnerable mucosal sites where viral entry occurs. This strategy aligns with HBD-2's natural localization to the oral cavity, nares, and upper airway .

  • Combination approaches: Investigate synergistic effects between HBD-2 and other antiviral agents targeting different stages of the viral lifecycle.

  • Broad-spectrum applications: Expand studies to other coronaviruses and respiratory viruses, building on evidence that the mouse ortholog of HBD-2 has shown inhibitory effects against other coronaviruses .

  • Addressing defensin deficiency: Research suggests patients infected with SARS-CoV-2 have lower mRNA levels of several defensins including HBD-2 . Therapeutic approaches that restore normal defensin levels might enhance antiviral protection.

Understanding the mechanistic basis of HBD-2's antiviral activity provides a foundation for rational design of novel therapeutic agents that could have advantages in terms of specificity and reduced immunogenicity compared to traditional approaches.

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