BG3 Antibody

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Description

Research Applications and Functional Insights

BG3 has been instrumental in elucidating VACV assembly mechanisms.

Functional Findings:

  • Immunoprecipitation: BG3 precipitates p4a and smaller fragments (60–75 kDa), likely representing intermediate processing products .

  • Immunofluorescence: Stains viral factories and virion-sized particles, aiding in visualizing viral assembly sites .

  • Virion Packaging: The 4a fragment’s tight packaging in virion cores limits BG3’s accessibility, explaining its preference for p4a in assays .

Comparative Analysis with Other Antibodies

While BG3 targets VACV A10, other anti-VACV antibodies (e.g., anti-B5 or anti-L1) focus on distinct viral proteins. Unlike BG3, which recognizes conformational epitopes, many antibodies bind linear epitopes, enabling broader applications in denatured protein assays .

Limitations and Research Implications

  • Conformational Specificity: Limits utility in Western blotting unless high antigen concentrations are used .

  • Viral Morphogenesis Studies: BG3’s specificity for A10 makes it a critical tool for tracking virion maturation and core protein dynamics .

Future Directions

Further studies could explore BG3’s utility in:

  • High-resolution imaging of VACV replication compartments.

  • Engineering recombinant antibodies for enhanced affinity to processed 4a fragments.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
BG3 antibody; At3g57240 antibody; F28O9.90Probable glucan endo-1,3-beta-glucosidase BG3 antibody; EC 3.2.1.39 antibody; Beta-1,3-glucanase 3 antibody; AtBG3 antibody
Target Names
BG3
Uniprot No.

Target Background

Function
Beta-1,3-Glucanases (BG) are enzymes that may play a significant role in the plant's defense mechanisms against pathogens.
Gene References Into Functions
  1. Research indicates that constitutive plasmodesmata (Pd)-associated beta-1,3-Glucanases (BG), unlike the stress-regulated extracellular pathogenesis-related (PR)-BG, are directly involved in regulating callose levels at Pd and influencing the cell-to-cell transport and spread of viruses. PMID: 23656331
Database Links

KEGG: ath:AT3G57240

STRING: 3702.AT3G57240.1

UniGene: At.292

Protein Families
Glycosyl hydrolase 17 family
Subcellular Location
Endoplasmic reticulum. Secreted.

Q&A

Here’s a structured collection of FAQs for researchers working with BG3 antibodies, organized by scientific depth and methodological focus:

Advanced Research Questions

  • How to resolve contradictions in BG3 antibody reactivity across studies?

    FactorValidation MethodExample
    Epitope conformationX-ray crystallographyA33 antibody epitope mapping
    Species cross-reactivityPhylogenetic sequence alignmentCompare murine vs. human BG3 targets
    Batch variabilitySide-by-side neutralization assaysTest multiple lots in EEV inhibition

    For structural discrepancies, use Rosetta-derived scoring matrices to predict antibody-antigen interactions or S3AI models for interpretable binding predictions .

  • What computational methods improve BG3 antibody developability?

    • Physics-based docking: Optimize HCDR3 loops for antigen affinity while retaining structural homology

    • AI-driven pipelines: Combine sequence landscapes and developability filters (e.g., solubility, aggregation)

    • In silico affinity maturation: Engineer mutations (e.g., K36 dimethylation) to rescue binding to escaped viral variants

Methodological Guidance Table

ChallengeSolutionKey Citations
Low antigen affinityDirected evolution with yeast display
Non-specific IHC stainingBlock with 5% milk + 0.5 M NaCl
Poor Western blot resolutionUse 15% SDS-PAGE + methanol-activated PVDF
Neutralization assay variabilityStandardize complement source (e.g., guinea pig serum)

Data Interpretation

  • Why do BG3 antibodies show dual bands (17 kDa and 42 kDa) in Western blot?

    • 17 kDa band: Likely represents histone H3 dimethyl-K36 modification

    • 42 kDa band: Suggests cross-reactivity with unrelated proteins; perform immunodepletion or switch to monoclonal formats

  • How to benchmark BG3 antibody neutralization potency?
    Use plaque reduction neutralization tests (PRNT) with:

    • Complement dependence: Compare activity with/without guinea pig serum

    • In vivo validation: Intraperitoneal antibody administration followed by intranasal viral challenge (e.g., 1 × 10⁵ PFU vaccinia-WR)

Structural and Functional Insights

  • Epitope conservation: BG3 antibodies targeting A33 vaccinia protein show cross-species neutralization via a conformational epitope (Asp35 critical)

  • Fc engineering: Subclass switching to IgG3-KVH improves plasma half-life while retaining FcγR binding

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