BRCA2B Antibody

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Description

Introduction

The BRCA2 antibody is a crucial immunological tool used in the study of the BRCA2 protein, which is encoded by the BRCA2 gene . The BRCA2 protein plays a vital role in DNA repair, specifically in homologous recombination, and is essential for maintaining genomic stability . Mutations in the BRCA2 gene are associated with an increased risk of breast, ovarian, prostate, and other cancers . Antibodies against BRCA2 are used in various research applications, including identifying and characterizing the protein, studying its interactions, and detecting alterations in its expression in normal and cancerous tissues .

Function and Role of BRCA2 Protein

The BRCA2 protein is involved in double-strand break repair and homologous recombination . It interacts with RAD51, a key protein in DNA repair, and promotes the assembly of RAD51 onto single-stranded DNA (ssDNA) . This interaction facilitates recombinational DNA repair by targeting RAD51 to ssDNA, displacing replication protein-A (RPA), and stabilizing RAD51-ssDNA filaments . BRCA2 is also part of a PALB2-scaffolded HR complex, which contains RAD51C and is thought to play a role in DNA repair by HR . In addition to its role in DNA repair, BRCA2 may participate in S phase checkpoint activation and interact with the TREX-2 complex to prevent R-loop-associated DNA damage .

Types of BRCA2 Antibodies

BRCA2 antibodies are available in different forms, including monoclonal and polyclonal antibodies . Monoclonal antibodies are produced from a single clone of immune cells and bind to a specific epitope on the BRCA2 protein . Polyclonal antibodies are a mixture of antibodies produced by different immune cells and can bind to multiple epitopes on the BRCA2 protein .

Applications of BRCA2 Antibodies in Research

BRCA2 antibodies are used in a variety of research applications, including:

  1. Western Blotting (WB): Used to detect the presence and size of the BRCA2 protein in cell lysates or tissue extracts .

  2. Immunoprecipitation (IP): Used to isolate BRCA2 protein and its interacting partners from cell lysates . This technique can help study protein-protein interactions and identify novel components of BRCA2 complexes .

  3. Immunohistochemistry (IHC): Used to visualize the expression and localization of BRCA2 protein in tissue sections . IHC can help study BRCA2 expression patterns in normal and cancerous tissues.

  4. Immunofluorescence (IF): Used to visualize the expression and localization of BRCA2 protein in cells . IF can provide information about the subcellular localization of BRCA2 and its changes in response to different stimuli.

  5. Enzyme-linked immunosorbent assay (ELISA): Used to quantify the amount of BRCA2 protein in samples.

  6. Tissue truncation test: An antibody-based method developed to identify truncated BRCA2 proteins in breast cancer specimens .

Research Findings Involving BRCA2 Antibodies

  1. Detection of BRCA2 Protein: BRCA2 antibodies have been used to detect native BRCA2 protein in various tissue types, including breast epithelium .

  2. Role in Cellular Differentiation: Studies suggest that BRCA2 may play a role in processes associated with cellular differentiation, in addition to its roles in proliferation and DNA repair .

  3. Identification of Truncated BRCA2 Proteins: BRCA2 antibodies have been used to identify truncated BRCA2 proteins in breast cancer tissue biopsies, which can help identify patients with BRCA2 mutations .

  4. Interaction with HR Proteins: BRCA2 antibodies have been used to demonstrate the interaction of truncated BRCA2 with mediators of homologous recombination (HR), such as PALB2 and RAD51 .

  5. Mechanism of Action: BRCA2 antibodies have aided research into the molecular mechanism by which BRCA2 facilitates RAD51-mediated homologous recombinational repair .

  6. PARP Inhibitor Resistance: BRCA2 antibodies have been used to investigate the mechanisms of PARP inhibitor resistance in cancer cells, revealing that amplification of a mutant-carrying BRCA2 allele contributes to PARP inhibitor resistance .

Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (Made-to-order)
Synonyms
BRCA2B antibody; BRCA2(V) antibody; At5g01630 antibody; F7A7.150Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B antibody; AtBRCA2B antibody
Target Names
BRCA2B
Uniprot No.

Target Background

Function
This antibody targets BRCA2B, a protein involved in double-strand break repair and homologous recombination. BRCA2B mediates DNA repair through the facilitation of RAD51 and DMC1. It plays a critical role in both somatic and meiotic homologous recombination, and is essential for the formation of RAD51 and DMC1 foci during male meiotic homologous recombination in prophase I.
Gene References Into Functions
PMID: 22077663, AtBRCA2 is required for proper meiotic synapsis and mediates the recruitment of AtRAD51 and AtDMC1., .
PMID: 15014444, Brca2 plays an essential role during meiosis in Arabidopsis., .
Database Links

KEGG: ath:AT5G01630

STRING: 3702.AT5G01630.1

UniGene: At.33531

Tissue Specificity
Expressed in flower buds.

Q&A

What is BRCA2 and why are antibodies against it important in cancer research?

BRCA2 (Breast Cancer 2, Early Onset) is a tumor suppressor protein involved in double-strand break repair and homologous recombination. BRCA2 binds RAD51 and potentiates recombinational DNA repair by promoting assembly of RAD51 onto single-stranded DNA . BRCA2 antibodies are critical research tools that enable the detection, localization, and quantification of BRCA2 protein in various experimental settings. These antibodies help researchers investigate the role of BRCA2 in DNA repair mechanisms and its dysregulation in cancer pathogenesis, particularly in breast, ovarian, and prostate cancers where BRCA2 mutations are frequently observed . Furthermore, BRCA2 antibodies facilitate the evaluation of potential therapeutic approaches targeting DNA repair pathways, such as PARP inhibitors, which show synthetic lethality in BRCA2-deficient cells .

What are the primary applications of BRCA2 antibodies in research settings?

BRCA2 antibodies are versatile tools with multiple research applications:

  • Western Blotting (WB): Detects BRCA2 protein (observed molecular weight 384 kDa) in cell and tissue lysates at dilutions typically ranging from 1:1000 to 1:8000 .

  • Immunohistochemistry (IHC): Used to visualize BRCA2 localization in tissue sections. Protocols typically involve heat-induced epitope retrieval with reagents like Antigen Retrieval Reagent-Basic before antibody incubation at concentrations around 5 μg/mL .

  • Immunofluorescence (IF): Enables subcellular localization studies of BRCA2, particularly its nuclear distribution and colocalization with other DNA repair proteins .

  • Immunoprecipitation (IP): Allows isolation of BRCA2 protein complexes to study protein-protein interactions, particularly with RAD51 and other DNA repair factors .

  • ELISA: Provides quantitative measurement of BRCA2 protein levels in research samples .

The selection of the appropriate application depends on the specific research question and experimental design.

How should researchers validate BRCA2 antibody specificity for their experimental systems?

Validating BRCA2 antibody specificity is crucial for reliable experimental results. A comprehensive validation approach should include:

  • Positive and negative controls: Use cell lines known to express BRCA2 (e.g., HeLa, HepG2, MCF-7) as positive controls , and BRCA2-knockout or BRCA2-deficient cell lines (e.g., DLD1 BRCA2(-/-)) as negative controls .

  • Multiple antibody validation: Compare results from at least two different antibodies targeting distinct epitopes of BRCA2.

  • Knockdown verification: Perform siRNA or shRNA-mediated knockdown of BRCA2 and confirm decreased signal intensity.

  • Western blot analysis: Verify that the antibody detects a single band at the expected molecular weight (384 kDa) .

  • Peptide competition assay: Pre-incubate the antibody with the immunizing peptide to demonstrate signal elimination when the antibody is neutralized.

  • Immunoprecipitation-mass spectrometry: Confirm that the antibody specifically pulls down BRCA2 protein.

Thorough validation ensures experimental rigor and reproducibility, particularly important when studying a protein of high molecular weight like BRCA2 where non-specific binding can be problematic.

What are the optimal fixation and antigen retrieval methods for BRCA2 immunohistochemistry?

Successful BRCA2 immunohistochemistry requires optimized fixation and antigen retrieval protocols:

  • Fixation:

    • Use 10% neutral buffered formalin for 24-48 hours for consistent results

    • Avoid prolonged fixation which can mask BRCA2 epitopes

    • For frozen sections, use 4% paraformaldehyde fixation for 10-15 minutes

  • Antigen Retrieval:

    • Heat-induced epitope retrieval (HIER) is essential for most BRCA2 antibodies

    • Use basic retrieval buffer (pH 9.0) for optimal results with most BRCA2 antibodies

    • Perform retrieval at 95-98°C for 20-30 minutes in a pressure cooker or water bath

    • Allow gradual cooling to room temperature before antibody application

  • Protocol Optimization:

    • Test multiple antibody dilutions (typically starting at 5 μg/mL)

    • Incubate primary antibody for 1 hour at room temperature or overnight at 4°C

    • Use appropriate detection systems such as HRP-polymer antibodies

    • Include appropriate blocking steps to minimize background staining

The detection of BRCA2 in breast cancer tissue sections typically reveals staining in both cytoplasm and nuclei of epithelial cells when using optimized protocols .

What are the recommended controls and standards for Western blot detection of BRCA2?

For reliable Western blot detection of BRCA2, implement the following controls and standards:

  • Positive Controls:

    • Cell lines with confirmed BRCA2 expression (HeLa, HepG2, MCF-7)

    • Recombinant BRCA2 protein fragments as sizing standards

    • Tissue lysates with validated BRCA2 expression

  • Negative Controls:

    • BRCA2 knockout or knockdown samples

    • Cell lines with naturally low BRCA2 expression

    • Secondary antibody-only controls to assess non-specific binding

  • Loading Controls:

    • High molecular weight loading controls appropriate for a large protein like BRCA2

    • β-actin (42 kDa) for general protein loading

    • Nuclear markers if studying nuclear BRCA2 fractions

  • Technical Recommendations:

    • Use gradient gels (3-8% or 4-12%) for optimal resolution of the 384 kDa protein

    • Extended transfer times (overnight at low voltage) for complete transfer

    • Ponceau S staining to confirm successful protein transfer

    • Dilute primary antibody appropriately (1:1000-1:8000 range)

    • Block membranes thoroughly to minimize background

  • Functional Controls:

    • Samples treated with DNA-damaging agents to observe changes in BRCA2 levels

    • Radiation-treated samples to demonstrate upregulation of BRCA2 in radioresistant cells

These controls ensure specificity, appropriate detection, and experimental validity when studying this high molecular weight tumor suppressor protein.

How can researchers effectively troubleshoot weak or non-specific BRCA2 antibody signals?

When encountering weak or non-specific BRCA2 antibody signals, researchers should systematically address several potential issues:

For Weak Signals:

  • Protein Extraction Optimization:

    • Use RIPA buffer supplemented with protease inhibitors

    • Optimize sonication or homogenization for complete extraction

    • Avoid freeze-thaw cycles that may degrade BRCA2

  • Antibody Concentration Adjustment:

    • Increase antibody concentration incrementally (refer to manufacturer's recommendation range)

    • Extend primary antibody incubation time (overnight at 4°C)

  • Detection Enhancement:

    • Use more sensitive detection systems (e.g., chemiluminescent substrates with extended light emission)

    • Consider signal amplification methods (e.g., biotin-streptavidin systems)

    • Increase exposure time during imaging

For Non-specific Signals:

  • Blocking Optimization:

    • Increase blocking time or concentration

    • Test alternative blocking agents (BSA, non-fat dry milk, commercial blockers)

    • Include 0.1-0.3% Triton X-100 to reduce hydrophobic interactions

  • Washing Improvements:

    • Increase number and duration of washes

    • Use appropriate detergent concentration in wash buffers

    • Ensure thorough washing between steps

  • Antibody Specificity Enhancement:

    • Pre-absorb antibody with non-specific proteins

    • Test different lots or sources of antibodies

    • Use monoclonal antibodies for higher specificity

  • Sample Preparation Refinement:

    • Ensure complete denaturation of proteins for Western blot

    • For IHC, optimize fixation time and antigen retrieval

Additional Troubleshooting Steps:

  • Compare results across multiple experimental techniques (WB, IHC, IF)

  • Perform peptide competition assays to confirm specificity

  • Validate with knockout/knockdown controls

  • Consider fresh antibody if current stock may be compromised

Methodical troubleshooting following these guidelines will help resolve most BRCA2 antibody detection issues.

How can BRCA2 antibodies be used to investigate DNA repair mechanisms in cancer cells?

BRCA2 antibodies enable sophisticated investigations into DNA repair mechanisms in cancer cells through multiple complementary approaches:

  • DNA Damage Response Dynamics:

    • Track BRCA2 recruitment to sites of DNA damage using immunofluorescence after laser microirradiation

    • Monitor temporal changes in BRCA2 localization following exposure to genotoxic agents like radiation (9 Gy)

    • Quantify BRCA2-RAD51 colocalization at repair foci using dual immunostaining

  • Homologous Recombination Competency Assays:

    • Assess functional BRCA2 by measuring RAD51 foci formation after irradiation

    • Use BRCA2 immunoprecipitation to analyze interactions with RAD51 and other repair proteins

    • Combine with chromatin immunoprecipitation (ChIP) to determine BRCA2 binding to damaged DNA regions

  • Synthetic Lethality Studies:

    • Correlate BRCA2 expression levels with sensitivity to PARP inhibitors

    • Compare BRCA2 protein levels in sensitive versus resistant cell lines

    • Track changes in BRCA2 expression during acquired resistance development

  • Structure-Function Analysis:

    • Use domain-specific BRCA2 antibodies to study the roles of different protein regions

    • Investigate the functional impacts of BRCA2 mutations using antibodies against wild-type and mutant proteins

    • Examine how BRCA2 conformational changes affect its interactions with DNA and RAD51

  • Cell Cycle-Dependent Regulation:

    • Synchronize cells and use BRCA2 antibodies to monitor expression and localization throughout the cell cycle

    • Combine with phospho-specific antibodies to track BRCA2 post-translational modifications

    • Correlate with markers of S phase checkpoint activation

These approaches provide mechanistic insights into how BRCA2 dysfunction contributes to genomic instability and carcinogenesis, potentially revealing new therapeutic vulnerabilities.

What methods can be used to study BRCA2-RAD51 interactions using antibody-based approaches?

Studying BRCA2-RAD51 interactions is crucial for understanding homologous recombination mechanisms and can be accomplished through several antibody-based techniques:

  • Co-Immunoprecipitation (Co-IP):

    • Immunoprecipitate BRCA2 using specific antibodies and detect co-precipitated RAD51

    • Perform reciprocal Co-IP with RAD51 antibodies to confirm interaction

    • Use crosslinking agents to stabilize transient interactions

    • Compare interactions before and after DNA damage induction

  • Proximity Ligation Assay (PLA):

    • Visualize direct BRCA2-RAD51 interactions in situ with single-molecule resolution

    • Quantify interaction events in different cellular compartments

    • Monitor temporal changes in interaction frequency after DNA damage

  • Fluorescence Resonance Energy Transfer (FRET):

    • Label BRCA2 and RAD51 antibodies with compatible FRET donor/acceptor fluorophores

    • Measure energy transfer as indicator of protein proximity

    • Perform live-cell FRET imaging to track dynamic interactions

  • Chromatin Immunoprecipitation (ChIP):

    • Use sequential ChIP with BRCA2 and RAD51 antibodies to identify genomic regions where both proteins co-occupy

    • Combine with high-throughput sequencing (ChIP-seq) to map interaction sites genome-wide

  • Electron Microscopy Techniques:

    • Use antibody labeling with gold particles to visualize BRCA2-RAD51 complexes

    • Study structural arrangements as observed in electron microscopy reconstructions showing that BRCA2 exists as a dimer with two oppositely-oriented sets of RAD51 molecules binding the dimer

    • Analyze how single-stranded DNA binds along the long axis of BRCA2 to establish RAD51 filament formation

  • Functional Analysis:

    • Use domain-specific antibodies to map interaction regions

    • Block specific domains with antibodies to disrupt interactions and measure functional consequences

    • Compare wild-type versus mutant BRCA2 interactions with RAD51 using variant-specific antibodies

These methodologies provide complementary data on the molecular mechanisms by which BRCA2 facilitates RAD51-mediated homologous recombination, which is essential for maintaining genomic stability.

How can BRCA2 antibodies be used in functional classification of BRCA2 variants of unknown significance (VUS)?

BRCA2 antibodies play a critical role in the functional classification of variants of unknown significance (VUS), contributing to clinical interpretation through several methodological approaches:

  • Protein Expression and Stability Analysis:

    • Western blot analysis to determine if VUS affects BRCA2 protein levels or stability

    • Pulse-chase experiments with immunoprecipitation to measure protein half-life

    • Detection of truncated proteins that may result from frameshift or nonsense VUS

  • Subcellular Localization Studies:

    • Immunofluorescence microscopy to determine if VUS affects nuclear localization

    • Comparison of wild-type versus variant localization patterns before and after DNA damage

    • Quantitative analysis of nuclear/cytoplasmic distribution ratios

  • Protein-Protein Interaction Assessment:

    • Co-immunoprecipitation to evaluate if VUS alters interaction with RAD51 and other binding partners

    • Compare binding affinities between wild-type and variant BRCA2

    • Domain-specific antibodies to determine which interactions are affected by specific VUS

  • DNA Repair Functionality Testing:

    • Immunofluorescence detection of RAD51 foci formation as a surrogate marker for BRCA2 function

    • Quantification of γH2AX foci resolution to assess DNA repair capacity

    • Integration with high-throughput methods like the MANO-B assay which utilizes BRCA2-deficient cells and PARP inhibitors

  • Integration with Functional Genomics Approaches:

    • Complementation assays in BRCA2-deficient cells expressing VUS

    • Correlation of antibody-detected protein characteristics with cell survival following DNA damage

    • Implementation in the Accurate BRCA Companion Diagnostic (ABCD) test for rapid VUS pathogenicity evaluation

DrugOptimal Concentration for VUS Functional ClassificationSensitivity vs. IARC ClassificationSpecificity vs. IARC Classification
Olaparib2.0 μM95% (CI: 77-100%)95% (CI: 82-99%)
Niraparib0.5 μM95% (CI: 77-100%)95% (CI: 82-99%)
Rucaparib2.0 μM95% (CI: 77-100%)95% (CI: 82-99%)
CBDCA2.0 μM95% (CI: 77-100%)95% (CI: 82-99%)

Data derived from the MANO-B method evaluation of BRCA2 variants

These antibody-based approaches provide critical evidence for classifying VUS, potentially impacting clinical decision-making regarding cancer risk assessment and therapeutic strategies.

What are the challenges in detecting post-translational modifications of BRCA2 using antibody-based methods?

Detecting post-translational modifications (PTMs) of BRCA2 presents several unique challenges:

  • Size and Structural Complexity:

    • BRCA2's large size (384 kDa) complicates comprehensive PTM mapping

    • Multiple domains can harbor various modifications simultaneously

    • Conformational changes may mask or expose modification sites

  • PTM-Specific Antibody Development Challenges:

    • Generating high-specificity antibodies against phosphorylation, ubiquitination, or SUMOylation sites

    • Ensuring minimal cross-reactivity with unmodified protein regions

    • Validating modification-specific antibodies in complex cellular contexts

  • Low Abundance of Modified Forms:

    • Many BRCA2 PTMs exist transiently or at very low stoichiometry

    • Signal amplification methods may be required for detection

    • Need for enrichment strategies before antibody-based detection

  • Temporal Dynamics of Modifications:

    • PTMs often occur rapidly after DNA damage and may be quickly reversed

    • Time-course experiments with precisely timed fixation protocols are necessary

    • Synchronized cell populations may be required for consistent results

  • Technical Considerations:

    • Preservation of modifications during sample preparation (phosphatase/protease inhibitors)

    • Specialized extraction protocols to maintain modification integrity

    • Detection of specific PTMs against background of multiple modifications

  • Validation Approaches:

    • Use of phosphatase or deubiquitinase treatments as negative controls

    • Correlation with kinase/E3 ligase inhibition or activation

    • Mutational analysis of modification sites

    • Comparison with mass spectrometry data

Addressing these challenges requires integrated approaches combining antibody-based detection with mass spectrometry, site-directed mutagenesis, and functional assays to comprehensively characterize BRCA2 PTMs and their biological significance.

How can researchers effectively combine BRCA2 antibodies with advanced imaging techniques?

Integrating BRCA2 antibodies with advanced imaging techniques enables sophisticated visualization of BRCA2 dynamics and functions:

  • Super-Resolution Microscopy Applications:

    • Structured Illumination Microscopy (SIM): Achieves ~100 nm resolution to visualize BRCA2 localization relative to nuclear structures

    • Stochastic Optical Reconstruction Microscopy (STORM): Provides ~20 nm resolution for precise mapping of BRCA2 within repair foci

    • Stimulated Emission Depletion (STED): Enables detailed visualization of BRCA2-RAD51 interactions at DNA damage sites

  • Live-Cell Imaging Strategies:

    • SNAP/CLIP-Tag Technology: Combine with domain-specific BRCA2 antibodies for pulse-chase analysis of protein dynamics

    • Fluorescent Antibody Fragments: Use Fab fragments for reduced interference with protein function

    • Antibody-based FRET Sensors: Monitor conformational changes in BRCA2 during DNA repair

  • Correlative Light and Electron Microscopy (CLEM):

    • Immunogold labeling with BRCA2 antibodies for ultrastructural localization

    • Correlation with fluorescence data to bridge resolution gaps

    • Integration with tomography to generate 3D reconstructions of BRCA2-containing complexes

  • Multiplexed Imaging Approaches:

    • Cyclic Immunofluorescence (CycIF): Sequential antibody staining/elution for co-detection of multiple repair factors

    • Mass Cytometry Imaging: Metal-conjugated antibodies for highly multiplexed tissue imaging

    • DNA-PAINT: DNA-conjugated antibodies for multiplexed super-resolution imaging

  • Quantitative Analysis Methods:

    • Automated foci counting algorithms for high-throughput analysis

    • Single-molecule tracking of antibody-labeled BRCA2

    • Machine learning approaches for pattern recognition in BRCA2 distribution

  • Practical Implementation Tips:

    • Optimize fixation to preserve antigenicity while maintaining structural integrity

    • Use smaller probes (Fab fragments, nanobodies) for better penetration and reduced linkage error

    • Implement drift correction for long acquisition times

    • Consider photobleaching effects when designing experiments

These advanced imaging approaches, when combined with high-quality BRCA2 antibodies, provide unprecedented insights into the spatial organization, dynamics, and functional interactions of BRCA2 in DNA repair processes.

What are emerging antibody-based technologies for studying BRCA2 function in clinical samples?

Emerging antibody-based technologies are transforming how researchers study BRCA2 function in clinical samples, bridging basic research with clinical applications:

  • Single-Cell Protein Analysis:

    • Single-cell Western blotting: Quantify BRCA2 expression heterogeneity in tumor samples

    • Mass cytometry (CyTOF): Simultaneously measure BRCA2 alongside dozens of other proteins

    • Microfluidic antibody capture: Analyze BRCA2 in circulating tumor cells

  • Spatially-Resolved Proteomics:

    • Digital spatial profiling: Quantify BRCA2 with spatial context in FFPE samples

    • Imaging mass cytometry: Map BRCA2 distribution in tissue microenvironments

    • Multiplexed ion beam imaging (MIBI): Achieve subcellular resolution of BRCA2 localization

  • Functional Assessment in Patient Samples:

    • Ex vivo organoid cultures: Test BRCA2 function and drug responses

    • Patient-derived xenografts: Evaluate BRCA2-targeted therapies

    • RAD51 foci formation assays: Functional biomarker in tumor biopsies

  • Liquid Biopsy Applications:

    • Extracellular vesicle immunocapture: Detect BRCA2 in tumor-derived exosomes

    • Circulating tumor DNA complementation: Correlate BRCA2 mutations with protein expression

    • Plasma proteomics: Identify BRCA2-associated biomarkers

  • High-Throughput Clinical Implementations:

    • Automated IHC platforms: Standardized BRCA2 detection in pathology workflows

    • Miniaturized immunoassays: Rapid assessment from minimal sample volumes

    • ABCD (Accurate BRCA Companion Diagnostic) test: Rapid evaluation of BRCA2 VUS pathogenicity using variant cDNAs and control variants

  • Integration with Precision Medicine Approaches:

    • Antibody-drug conjugate targeting: Selective delivery to BRCA2-deficient cells

    • Functional antibody screening: Identify synthetic lethal interactions

    • Theranostic applications: Combined diagnostic and therapeutic approaches

These technologies are particularly valuable for predicting PARP inhibitor sensitivity, with assays demonstrating high sensitivity and specificity (95% confidence intervals: 77–100% and 82–99%, respectively) compared to established classification systems . The integration of these advanced antibody-based methods enables more precise patient stratification and therapeutic decision-making in clinical oncology.

How do monoclonal and polyclonal BRCA2 antibodies compare in research applications?

Monoclonal and polyclonal BRCA2 antibodies each offer distinct advantages and limitations that researchers should consider when designing experiments:

FeatureMonoclonal BRCA2 AntibodiesPolyclonal BRCA2 Antibodies
SpecificityHigh specificity for a single epitope (e.g., clone 234403 targeting Met1-Thr200) Recognize multiple epitopes across the BRCA2 protein
SensitivityMay have lower sensitivity, especially for denatured/fixed samplesGenerally higher sensitivity due to binding multiple epitopes
Batch-to-Batch ConsistencyExcellent reproducibility between lotsVariable between different production batches
ApplicationsExcellent for highly specific detection needsBetter for applications requiring signal amplification
Epitope AccessibilityMay fail if single epitope is masked or modifiedMore robust when protein conformation is altered
Post-translational ModificationsBetter for detecting specific modifications at defined sitesMay detect protein regardless of modification state
Background SignalTypically lower background in optimized conditionsMay show higher background/cross-reactivity
Production ComplexityRequires hybridoma technology, more complex to produceSimpler production process
Specific ExamplesClone 234403 (targets Met1-Thr200) , 3D12 (targets AA 1-300) Polyclonal antibodies targeting AA 21-130 , AA 2990-3232

Application-Specific Recommendations:

The choice between monoclonal and polyclonal BRCA2 antibodies should be guided by the specific research application, required specificity, and experimental conditions.

What criteria should researchers use when selecting BRCA2 antibodies for specific applications?

Selecting the optimal BRCA2 antibody requires systematic evaluation of multiple criteria tailored to specific experimental applications:

  • Target Epitope Considerations:

    • Domain-specific targeting: Choose antibodies recognizing functional domains relevant to your research question (DNA-binding domain, RAD51-interaction regions)

    • Epitope accessibility: Consider whether the epitope is accessible in your experimental conditions (native vs. denatured)

    • Species conservation: Ensure epitope conservation when working with model organisms

    • Variant coverage: Verify that antibodies will recognize mutant forms being studied

  • Validation Documentation:

    • Knockout validation: Prioritize antibodies validated in BRCA2-knockout systems

    • Multiple application validation: Confirm performance in your specific application (WB, IHC, IF, IP)

    • Independent validation: Consider antibodies validated by independent laboratories/publications

    • Batch-specific validation data: Request lot-specific quality control data

  • Application-Specific Selection Criteria:

    For Western Blotting:

    • High sensitivity for detecting the 384 kDa protein

    • Minimal background at high molecular weight ranges

    • Validated with recombinant standards and control cell lines (HeLa, HepG2, MCF-7)

    • Compatible with your sample preparation methods

    For Immunohistochemistry:

    • Validated in FFPE tissues with appropriate retrieval methods

    • Optimal dilution ranges established (typically starting at 5 μg/mL)

    • Compatible with your detection system (e.g., HRP polymer)

    • Low background in negative control tissues

    For Immunoprecipitation:

    • Confirmed ability to recognize native protein conformations

    • High affinity for efficient pull-down

    • Low cross-reactivity with other proteins

    • Compatible with downstream applications (MS, activity assays)

  • Technical Specifications:

    • Antibody format: Consider different formats (purified IgG, Fab fragments, conjugated)

    • Host species: Select to avoid cross-reactivity with secondary detection systems

    • Clonality: Monoclonal for consistency, polyclonal for signal amplification

    • Concentration/working dilution: Higher concentrations may be needed for BRCA2 detection

  • Experimental Controls:

    • Availability of appropriate positive controls (recombinant proteins, overexpression systems)

    • Validated negative controls (knockdown/knockout samples)

    • Competing peptides for specificity testing

Systematic evaluation using these criteria ensures selection of the most appropriate BRCA2 antibody for specific research applications, minimizing technical difficulties and enhancing data reliability.

How can researchers strategically combine multiple BRCA2 antibodies to enhance experimental validity?

Strategic combination of multiple BRCA2 antibodies provides robust experimental validation and expanded analytical capabilities:

  • Multi-epitope Validation Strategy:

    • Use antibodies targeting different domains (N-terminal, central, and C-terminal) to confirm full-length protein detection

    • Compare antibodies recognizing distinct epitopes (e.g., AA 21-130 , AA 2990-3232 ) to validate specificity

    • Implement sandwich assay approaches with antibody pairs recognizing different epitopes for increased specificity

  • Functional Domain Analysis:

    • Apply domain-specific antibodies to analyze structure-function relationships

    • Combine DNA-binding domain antibodies with RAD51-interaction domain antibodies to correlate different functional aspects

    • Use C-terminal antibodies (e.g., against the Flag tag in recombinant systems) for localization studies

  • Multi-methodological Cross-validation:

    • Deploy different antibodies across complementary methods (WB, IF, IHC, IP)

    • Validate key findings with at least two independent antibodies

    • Compare monoclonal and polyclonal antibody results to balance specificity and sensitivity

  • Specialized Combinations for Complex Analyses:

    • Conformational Studies: Pair antibodies detecting exposed vs. hidden epitopes to analyze protein folding

    • PTM Analysis: Combine total BRCA2 antibodies with modification-specific antibodies

    • Interaction Studies: Use BRCA2 antibodies with partner protein antibodies (e.g., RAD51) in proximity ligation assays

  • Quantitative Multiplexing Approaches:

    • Implement multiplexed immunofluorescence with differently labeled BRCA2 antibodies

    • Perform sequential immunoprecipitation with different antibodies to isolate specific subcomplexes

    • Combine immunocapture with mass spectrometry for comprehensive interactome analysis

  • Practical Implementation Strategy:

    • Create an antibody validation matrix documenting performance across applications

    • Establish standard operating procedures for each antibody combination

    • Maintain consistent lot numbers for longitudinal studies

This strategic approach to BRCA2 antibody combination not only enhances experimental rigor but also provides deeper insights into BRCA2 biology through complementary data streams.

How might BRCA2 antibodies contribute to emerging therapeutic approaches in precision oncology?

BRCA2 antibodies are poised to make significant contributions to precision oncology through several innovative therapeutic approaches:

  • Companion Diagnostic Development:

    • Standardized IHC assays for patient stratification in PARP inhibitor trials

    • Implementation in the Accurate BRCA Companion Diagnostic (ABCD) test for rapid VUS evaluation

    • Integration with genomic data to create multi-modal predictive biomarkers

  • Functional Biomarker Discovery:

    • Identification of BRCA2 interaction partners that predict therapy response

    • Development of antibody panels targeting BRCA2 pathway proteins

    • Monitoring post-treatment changes in BRCA2 expression and localization

  • Therapeutic Resistance Mechanisms:

    • Investigation of BRCA2 restoration in acquired resistance

    • Detection of BRCA2 stabilizing factors in resistant tumors

    • Analysis of compensatory DNA repair pathway activation

  • Novel Therapeutic Modalities:

    • Antibody-Drug Conjugates: Targeting cells with aberrant BRCA2 localization

    • Proteolysis Targeting Chimeras (PROTACs): Inducing degradation of mutant BRCA2

    • Intrabodies: Engineered antibody fragments disrupting specific BRCA2 interactions

  • Combination Therapy Optimization:

    • Identification of synergistic targets in BRCA2-deficient cancers

    • Biomarker development for rational drug combinations

    • Monitoring pathway rewiring during sequential therapies

  • Emerging Applications in Immunotherapy:

    • Detection of BRCA2-derived neoantigens

    • Correlation of BRCA2 status with tumor mutation burden and immune infiltrate

    • Development of BRCA2 mutation-specific antibodies for targeted immunotherapies

The integration of BRCA2 antibodies in these therapeutic approaches requires rigorous validation and standardization but offers significant potential for advancing personalized treatment strategies in BRCA2-associated cancers.

What novel antibody engineering approaches might improve BRCA2 detection and analysis?

Emerging antibody engineering technologies offer promising advancements for BRCA2 detection and analysis:

  • Next-Generation Recombinant Antibodies:

    • Single-chain variable fragments (scFvs): Smaller size enables better penetration into complex samples

    • Bispecific antibodies: Simultaneous targeting of BRCA2 and interacting proteins

    • Nanobodies: Single-domain antibodies with enhanced access to cryptic epitopes

    • Synthetic antibody libraries: Designed specifically for challenging targets like BRCA2

  • Enhanced Antibody Modifications:

    • Site-specific conjugation: Precisely positioned fluorophores or enzymes that don't interfere with binding

    • Click chemistry adaptations: Modular functionalization for diverse applications

    • Photocrosslinkable antibodies: Capturing transient BRCA2 interactions

    • Cell-penetrating antibodies: Accessing intracellular BRCA2 in live cells

  • Proximity-Based Technologies:

    • Split-complementation systems: Detection of BRCA2 interactions through antibody-mediated enzyme reconstitution

    • Antibody-based FRET pairs: Monitoring conformational changes in BRCA2

    • Bioluminescence resonance energy transfer (BRET): Reduced photobleaching for long-term studies

    • HaloTag/SNAP-tag fusion with antibody fragments: Versatile labeling of BRCA2 complexes

  • Spatially-Resolved Detection Systems:

    • DNA-barcoded antibodies: Spatial transcriptomics integrated with BRCA2 protein detection

    • Multiplexed ion beam imaging (MIBI): High-parameter imaging with metal-conjugated antibodies

    • 4Pi-STORM microscopy: Ultra-high resolution imaging of BRCA2 complexes

  • Computationally Designed Antibodies:

    • Structure-guided antibody design: Targeting specific functional domains of BRCA2

    • Epitope-focused libraries: Enriched for binding to challenging BRCA2 regions

    • AI-optimized binding interfaces: Enhanced affinity and specificity

  • Responsive Antibody Systems:

    • Environmentally-responsive antibodies: Activated by DNA damage conditions

    • Allosteric antibodies: Reporting on BRCA2 conformational states

    • Optogenetic antibody systems: Light-controlled binding or reporting

These innovative antibody engineering approaches have the potential to overcome current limitations in BRCA2 detection and provide unprecedented insights into its functional dynamics in health and disease.

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