BUD16 Antibody

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Description

Gene and Protein Structure

The BUD16 gene (S000000755) encodes a protein essential for bud formation during yeast cell division. Its structure and function are well-characterized in the SGD database :

PropertyValue
ChromosomeXIV
ORF Length1,062 bp
Protein Mass40.0 kDa
Isoelectric Point5.37
Half-Life2.7 hours (log phase)

The BUD16 protein localizes to the bud neck and interacts with components of the septin ring, a structure critical for cytokinesis .

Research Applications

The antibody is integral to studies of:

  1. Cell Cycle Regulation: Investigating BUD16’s role in bud site selection and septin organization .

  2. Cytokinesis Defects: Monitoring protein localization during cell division .

  3. Protein Interactions: Mapping interactions with septins (e.g., CDC3, CDC10) .

Experimental Data

Example findings include:

  • Bud formation defects in bud16Δ mutants, rescued by reintroducing wild-type BUD16 .

  • Colocalization of BUD16 with septin proteins at the bud neck (validated via co-immunoprecipitation) .

Comparison with Human CD16 Antibodies

While structurally unrelated, the term "CD16" in human immunology refers to FcγRIIIA/B receptors involved in antibody-dependent cellular cytotoxicity (ADCC) . This highlights the importance of antibody specificity in cross-species studies.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
BUD16 antibody; YEL029CPutative pyridoxal kinase BUD16 antibody; EC 2.7.1.35 antibody; Bud site selection protein 16 antibody
Target Names
BUD16
Uniprot No.

Target Background

Function
BUD16 Antibody is crucial for the synthesis of pyridoxal-5-phosphate from vitamin B6, a vital process for bud site selection in yeast cells.
Gene References Into Functions
  1. BUD16, the gene encoding yeast pyridoxal kinase (Pdxk), has been identified as the most potent suppressor of novel gross chromosomal rearrangements. Pdxk plays a critical role in the metabolism of pyridoxal 5' phosphate (PLP), the active form of vitamin B6. PMID: 17696614
Database Links

KEGG: sce:YEL029C

STRING: 4932.YEL029C

Protein Families
Pyridoxine kinase family
Subcellular Location
Cytoplasm. Nucleus.

Q&A

What is CD16 and why is it an important target for antibodies in research?

CD16 (FcγRIII) is a low-affinity Fc receptor found predominantly on natural killer (NK) cells, neutrophils, monocytes, and certain lymphocyte subsets. This receptor exists in two isoforms: CD16a (FcγRIIIA) expressed on NK cells and macrophages, and CD16b (FcγRIIIB) expressed on neutrophils. CD16 serves as a critical mediator of antibody-dependent cellular cytotoxicity (ADCC), allowing these immune cells to recognize and eliminate antibody-coated target cells. The receptor is also involved in various immune regulatory functions, making it a valuable target for immunological research. Anti-CD16 antibodies enable researchers to identify CD16-expressing cells, study receptor function, and modulate NK cell activity in experimental settings .

How do different anti-CD16 antibody clones vary in their binding properties?

Anti-CD16 antibody clones exhibit distinct binding characteristics and functional effects due to differences in their epitope specificity and binding affinity. Research comparing four major clones (CB16, 3G8, B73.1, and MEM-154) has demonstrated significant variations in their ability to induce NK cell activation. The CB16 clone consistently shows superior stimulatory capacity, inducing higher expression of activation markers like CD107a, TNF-α, and IFN-γ compared to other clones. The 3G8 clone demonstrates moderate activation potential, while B73.1 and MEM-154 clones typically show lower stimulatory effects .

These differences stem from the specific epitopes recognized by each antibody clone and how engagement affects downstream signaling pathways. When selecting an anti-CD16 antibody for research, understanding these clone-specific properties is essential for experimental design and interpretation of results .

What are the recommended protocols for using anti-CD16 antibodies in flow cytometry?

For optimal flow cytometry results with anti-CD16 antibodies, follow these methodological guidelines:

  • Sample preparation: Isolate peripheral blood mononuclear cells (PBMCs) using density gradient centrifugation. For enhanced B cell detection, consider B cell enrichment using negative selection kits .

  • Antibody panel design: Include CD16 alongside complementary markers for comprehensive immune profiling. For NK cell analysis, combine anti-CD16 with anti-CD56, anti-CD3, and functional markers like CD107a .

  • Staining protocol:

    • Resuspend 1-5×10^6 cells in 100μl FACS buffer (PBS with 2% FCS and 1mM EDTA)

    • Add fluorochrome-conjugated antibodies at manufacturer-recommended concentrations (typically 1:200 dilution)

    • Incubate for 30 minutes on ice, protected from light

    • Wash twice with FACS buffer

    • Resuspend in appropriate volume for analysis

  • Instrument settings: When using specialized conjugates like BD Horizon BUV737 anti-CD16, optimize instrument settings using BD CompBeads for accurate compensation, particularly when multiple BD Horizon Brilliant dyes are used in the same experiment .

  • Data analysis: Set positive thresholds using the 99th percentile of fluorescence intensity from unstained or isotype control samples. For CD16, this approach provides more accurate results than arbitrary gating strategies .

These methodological considerations ensure reliable detection of CD16-expressing cell populations while minimizing technical artifacts .

How should researchers interpret CD16 expression patterns across different immune cell populations?

When analyzing CD16 expression, researchers should consider both the cell type-specific expression patterns and the technical aspects of detection:

CD16 expression varies significantly across immune cell lineages. On NK cells, CD16 expression defines functionally distinct subsets, with CD56^dim CD16^bright NK cells showing enhanced cytotoxic potential. Monocytes display heterogeneous CD16 expression, with CD16+ monocytes representing an inflammatory subset with distinct functional characteristics. B cells and T cells generally lack CD16 expression, though minor subpopulations may express low levels .

For accurate interpretation of flow cytometry data:

  • Use appropriate gating strategies based on well-defined positive controls

  • Consider potential downregulation of CD16 upon cell activation

  • Assess expression in context with other lineage and functional markers

  • Account for donor-to-donor variability in expression levels

  • Be aware that certain sample processing methods can cleave CD16 from cell surfaces

When using the clone 3G8 (as in BD Horizon BUV737 anti-human CD16), note that it cross-reacts with lymphocytes and monocytes but not granulocytes in non-human primates like baboons and rhesus macaques, which is important for translational research applications .

How do different anti-CD16 antibody clones affect NK cell functional responses in experimental systems?

Research comparing anti-CD16 antibody clones has revealed significant differences in their capacity to modulate NK cell functional responses. When NK cells are stimulated with beads coated with different anti-CD16 clones, the following patterns emerge:

Anti-CD16 CloneCD107a ExpressionIFN-γ ProductionTNF-α ProductionProliferation Induction
CB16HighestHighestHighestStrong
3G8ModerateLowLowModerate
B73.1LowMinimalMinimalModerate
MEM-154LowMinimalMinimalModerate

The CB16 clone consistently demonstrates superior ability to induce NK cell degranulation (measured by CD107a expression) and proinflammatory cytokine production. When NK cells are co-stimulated with K562 target cells and anti-CD16 antibodies, only the CB16 clone significantly enhances CD107a expression beyond that induced by K562 cells alone .

These functional differences highlight the importance of clone selection in experimental design. If the research goal is to achieve maximal NK cell activation through CD16 engagement, the CB16 clone would be preferred. Conversely, if the aim is to block CD16 function with minimal activation, other clones might be more appropriate. Understanding these clone-specific effects is crucial for designing NK cell-based immunotherapeutic approaches and interpreting experimental results accurately .

What are the methodological considerations for using anti-CD16 antibodies in NK cell expansion protocols?

NK cell expansion protocols incorporating anti-CD16 antibodies require careful methodological consideration to optimize outcomes:

These methodological considerations are essential for researchers aiming to generate large numbers of functional NK cells for immunotherapy applications or detailed mechanistic studies .

How can researchers effectively use anti-CD16 antibodies in combination with other markers for comprehensive immune cell profiling?

Comprehensive immune cell profiling using anti-CD16 antibodies requires sophisticated panel design and methodological considerations:

  • Multiparameter panel design principles:

    • Include lineage-defining markers (CD3, CD19, CD56) to establish major cell populations

    • Add functional markers (activation, exhaustion, memory) based on research questions

    • Consider fluorochrome brightness hierarchy, with CD16 typically requiring bright fluorochromes due to variable expression levels

    • Account for spectral overlap, particularly when using specialized conjugates like BD Horizon BUV737

  • Recommended marker combinations for specific applications:

    • NK cell functional assessment: CD3, CD56, CD16, CD107a, IFN-γ, TNF-α, KIRs

    • Monocyte subset analysis: CD14, CD16, HLA-DR, CD11c, CD11b, CCR2

    • ADCC activity: CD16, CD107a, perforin, granzymes, CD69

  • Data analysis strategy for CD16-based profiling:

    • Implement a hierarchical gating strategy beginning with viable single cells

    • Define major lineages before assessing CD16 expression

    • Use biaxial plots of CD16 versus complementary markers (e.g., CD56 for NK cells, CD14 for monocytes)

    • Apply dimensionality reduction techniques (tSNE, UMAP) for discovery of novel CD16+ populations

  • Quality control metrics:

    • Include Blank and isotype controls to establish accurate CD16 positivity thresholds

    • Monitor batch effects using consistent control samples

    • Implement computational debarcoding approaches for high-dimensional experiments

    • Assess antibody stability throughout experimental duration

Researchers have successfully applied these principles in developing comprehensive antibody staining databases, enabling the screening of 326 antibodies across all major PBMC subsets. Such approaches allow for efficient identification of marker combinations that provide optimal resolution of CD16-expressing populations .

What role do anti-CD16 antibodies play in studying antibody-dependent cellular cytotoxicity (ADCC)?

Anti-CD16 antibodies serve as crucial tools for investigating ADCC mechanisms through multiple methodological approaches:

  • Mechanistic studies of CD16 signaling:

    • Anti-CD16 antibodies can be used to directly trigger CD16 signaling pathways independently of target cells

    • Different clones can be compared to understand epitope-specific effects on downstream signaling

    • Phosphorylation of signaling molecules like ZAP70, Syk, and ERK can be measured following anti-CD16 stimulation

    • These approaches help delineate the molecular mechanisms connecting CD16 engagement to cytotoxic functions

  • ADCC blocking experiments:

    • Anti-CD16 antibodies can block the interaction between CD16 and the Fc portion of target-bound antibodies

    • Titration experiments determine optimal blocking concentrations (typically 10-20μg/ml)

    • Include appropriate isotype controls to account for non-specific effects

    • These experiments help quantify the CD16-dependent component of cytotoxicity

  • CD16 polymorphism studies:

    • Anti-CD16 antibodies can be combined with genotyping to correlate CD16 variants (e.g., 158V/F polymorphism) with ADCC efficiency

    • Flow cytometry with specific anti-CD16 clones can quantify receptor density on NK cells

    • Biolayer interferometry using anti-CD16 antibodies allows measurement of binding kinetics to different CD16 variants

    • These approaches help explain inter-individual variability in ADCC responses

  • Therapeutic antibody screening:

    • Anti-CD16 antibodies serve as tools to assess Fc-engineering strategies aimed at enhancing ADCC

    • Competitive binding assays with anti-CD16 antibodies help characterize Fc-receptor binding properties

    • Reporter assays using CD16-expressing cell lines can incorporate anti-CD16 antibodies as positive controls

    • These methods accelerate development of antibody therapeutics with optimized ADCC potential

Understanding these methodological applications of anti-CD16 antibodies is essential for researchers investigating ADCC mechanisms or developing therapeutic antibodies designed to engage CD16-mediated effector functions .

How do anti-CD16 antibodies contribute to studying the role of CD16 in COVID-19 research?

Anti-CD16 antibodies have become valuable tools in COVID-19 research, particularly for investigating the complex interplay between antibody responses and effector cell functions:

  • Studying SARS-CoV-2-specific antibody responses:

    • Anti-CD16 antibodies help identify memory B cells producing virus-specific antibodies

    • In single-cell sorting protocols, researchers use anti-CD16 (along with other markers) to exclude non-B cell populations

    • This approach has revealed convergent antibody responses to SARS-CoV-2 across multiple individuals

    • Studies show clonal expansion of receptor binding domain (RBD)-specific memory B cells expressing closely related antibodies in different individuals

  • Characterizing NK cell responses during COVID-19:

    • Anti-CD16 antibodies allow assessment of CD16 expression levels on NK cells during infection

    • Downregulation of CD16 can indicate NK cell activation and participation in ADCC

    • Flow cytometry panels incorporating anti-CD16 antibodies help track NK cell subset distribution changes during disease progression

    • These analyses provide insights into innate immune contributions to viral control

  • Evaluating therapeutic antibody mechanisms:

    • Anti-CD16 blocking experiments help determine the contribution of ADCC to the protective effects of therapeutic antibodies

    • Researchers at UT Austin discovered an antibody (SC27) that protects against all COVID-19 variants

    • This antibody works by binding to the spike protein, recognizing differences between variants

    • Anti-CD16 antibodies can help assess whether such therapeutic antibodies engage CD16-mediated effector functions

  • Method for studying antibody-mediated protection:

    • Biolayer interferometry using protein A biosensors and anti-CD16 antibodies helps characterize binding properties of neutralizing antibodies

    • "Classical sandwich assays" using multiple antibodies enable epitope mapping of SARS-CoV-2-specific antibodies

    • These approaches have contributed to understanding how antibodies like SC27 can effectively neutralize multiple variants

These applications highlight how anti-CD16 antibodies serve as essential tools for understanding the complex immunology of COVID-19 and developing effective therapeutic strategies .

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