C19orf44 (Chromosome 19 Open Reading Frame 44) is an uncharacterized protein encoded by a gene located on chromosome 19. The protein has a calculated molecular weight of approximately 66 kDa, though the observed molecular weight in Western blot analyses typically ranges from 66-71 kDa . It is expressed in various tissues including human cell lines (such as L02 cells), mouse liver tissue, and rat brain tissue . The protein's full sequence is available under GenBank Accession Number BC027869 . Although its specific function remains largely undetermined, it represents an area of active research interest, particularly in comparative biology given its conservation across multiple species.
C19orf44 antibodies have been validated for multiple research applications with varying recommended dilutions:
When selecting an application, researchers should consider that WB applications have shown consistent results across multiple species, making this technique particularly reliable for C19orf44 detection . For optimal results, it is recommended to conduct preliminary experiments to determine the ideal antibody concentration for your specific experimental conditions and sample types.
Most commercial C19orf44 antibodies demonstrate confirmed reactivity with human, mouse, and rat samples . Positive Western blot detection has been specifically validated in:
Researchers working with other species should be aware that cross-reactivity has not been comprehensively tested across all mammalian models. When studying C19orf44 in non-validated species, preliminary validation experiments are strongly recommended before proceeding with full experimental workflows.
Proper storage and handling of C19orf44 antibodies is critical for maintaining reactivity and specificity:
Most preparations include PBS with 0.02% sodium azide and 50% glycerol at pH 7.3
Antibodies remain stable for approximately one year after shipment when stored under recommended conditions
Important note: Some manufacturers specify "DO NOT ALIQUOT" for certain preparations , while others indicate that aliquoting is unnecessary for -20°C storage
Some formulations may contain 0.1% BSA in smaller size formats (e.g., 20μl)
When working with these antibodies, avoid repeated freeze-thaw cycles, minimize exposure to light, and handle according to standard laboratory safety procedures, particularly considering the presence of sodium azide in the storage buffer.
For optimal Western blot results with C19orf44 antibodies, researchers should follow these methodological guidelines:
Sample preparation:
Lyse cells/tissues in RIPA buffer containing protease inhibitors
Determine protein concentration using BCA or Bradford assay
Load 20-40 μg of total protein per lane
Gel electrophoresis and transfer:
Use 10% SDS-PAGE gels for optimal resolution around the 66-71 kDa range
Transfer to PVDF membrane (preferred over nitrocellulose for this protein)
Antibody incubation:
Detection:
This protocol has been validated using L02 cells, mouse liver tissue, and rat brain tissue as positive controls . When troubleshooting, remember that the observed molecular weight (66-71 kDa) may vary slightly due to post-translational modifications or splice variants.
Thorough validation of C19orf44 antibody specificity is essential before conducting critical experiments. A comprehensive validation approach should include:
Positive and negative control samples:
Multiple detection methods:
Compare results across different applications (WB, IHC, ICC-IF) when possible
Use at least two different antibodies targeting distinct epitopes of C19orf44
Molecular weight verification:
Peptide competition assays:
Sequence alignment analysis:
Perform in silico analysis to ensure epitope uniqueness
Check for potential cross-reactivity with homologous proteins
For optimal validation, researchers should document all validation steps and include appropriate controls in each experiment. This approach significantly enhances the reliability and reproducibility of research findings involving C19orf44.
Multiple factors can significantly impact the performance of C19orf44 antibodies in immunohistochemistry (IHC) applications:
Fixation methods:
Formalin fixation duration affects epitope accessibility
Overfixation may mask epitopes and reduce signal intensity
Different epitopes show varying sensitivity to fixation conditions
Antigen retrieval techniques:
Heat-induced epitope retrieval (HIER) using citrate buffer (pH 6.0) or EDTA buffer (pH 9.0)
Enzymatic retrieval methods may be necessary for certain tissues
Optimization of retrieval conditions is often tissue-specific
Antibody dilution:
Detection systems:
Polymer-based detection systems often provide superior signal-to-noise ratio
Tyramide signal amplification may be beneficial for low abundance targets
Chromogenic vs. fluorescent detection considerations
Tissue-specific factors:
Endogenous peroxidase or phosphatase activity can cause background
Autofluorescence in certain tissues requires appropriate quenching
Tissue-specific blocking reagents may be necessary
For consistent and reliable IHC results with C19orf44 antibodies, researchers should systematically optimize each of these parameters and maintain rigorous documentation of protocol conditions. This methodological approach enables meaningful comparison across different experiments and research groups.
When encountering inconsistent results with C19orf44 antibodies, implement this systematic troubleshooting approach:
Antibody-related issues:
Sample preparation concerns:
Ensure complete protein denaturation for WB applications
Verify protein concentration estimation methods
Check sample degradation by probing for housekeeping proteins
Ensure proper tissue fixation for IHC/ICC applications
Protocol optimization:
Detection system evaluation:
Compare different secondary antibodies
Assess alternative detection chemistries
Consider signal amplification systems for weak signals
Analytical considerations:
Document any variation in band pattern (potential splice variants)
Compare with published literature on C19orf44 detection
Consider post-translational modifications affecting detection
| Common Issue | Potential Cause | Solution Approach |
|---|---|---|
| No signal | Antibody degradation or inappropriate dilution | Test new antibody; optimize concentration |
| Multiple bands | Cross-reactivity or sample degradation | Increase washing; reduce antibody concentration; verify sample integrity |
| High background | Insufficient blocking or washing | Increase blocking time; use alternative blocking agent; increase wash duration |
| Variable results between replicates | Inconsistent sample preparation | Standardize lysate preparation; use internal controls |
Maintaining detailed records of all experimental conditions facilitates efficient troubleshooting and protocol optimization when working with C19orf44 antibodies.
Robust experimental design for C19orf44 expression studies requires inclusion of these critical controls:
Positive tissue/cell controls:
Negative controls:
Loading/procedural controls:
Housekeeping proteins (β-actin, GAPDH, tubulin) for Western blot normalization
Internal tissue controls for IHC (tissues with known expression patterns)
Procedural controls to validate staining/detection protocols
Validation controls:
Cross-validation approaches:
Comparison of results across multiple detection methods (WB, IHC, ICC)
Use of alternative antibodies targeting different epitopes of C19orf44
Correlation with mRNA expression data when available
When conducting comparative studies of C19orf44 across species, researchers should implement the following methodological approach:
Antibody cross-reactivity validation:
Sequence homology considerations:
Analyze the sequence conservation of C19orf44 across target species
Identify conserved and variable regions that might affect antibody binding
Select antibodies targeting highly conserved epitopes for cross-species studies
Application-specific adaptations:
Adjust protein extraction methods based on tissue-specific characteristics
Modify blocking reagents to address species-specific background issues
Adapt antigen retrieval methods for species-specific tissue architecture
Normalization strategies:
Use species-appropriate housekeeping genes/proteins for normalization
Consider species-specific expression levels of reference genes
Implement statistical methods that account for inter-species variability
Interpretation guidelines:
By implementing these methodological considerations, researchers can generate more reliable comparative data on C19orf44 expression and function across different species, contributing to broader understanding of its evolutionary conservation and potential biological roles.
For rigorous quantitative analysis of C19orf44 expression, researchers should address the following methodological considerations:
Western blot quantification:
Use a dilution series to establish antibody linearity range
Implement optimal blocking conditions to minimize background
Employ software-based densitometry with appropriate background subtraction
Normalize to validated housekeeping proteins
Report relative expression values rather than absolute densitometric units
Immunohistochemistry quantification:
Define specific scoring parameters (intensity, percentage positive cells)
Use digital image analysis software for unbiased assessment
Implement double-blind scoring when manual quantification is necessary
Establish clear cutoff values for positivity
Report both distribution patterns and intensity metrics
ELISA-based quantification:
Generate standard curves using recombinant C19orf44 protein
Determine assay sensitivity and dynamic range
Validate assay specificity using knockout/knockdown samples
Perform technical and biological replicates
Calculate intra- and inter-assay coefficients of variation
Statistical analysis considerations:
Select appropriate statistical tests based on data distribution
Account for multiple comparisons when analyzing expression across tissues
Report effect sizes alongside p-values
Consider hierarchical or mixed models when analyzing nested data
Implement power analysis to determine adequate sample sizes
Reporting standards:
Document all antibody details (catalog number, lot, dilution)
Specify image acquisition parameters
Include representative images of high, medium, and low expression
Present raw data alongside processed/normalized results when possible
Adherence to these quantitative guidelines ensures generation of reproducible and statistically sound data on C19orf44 expression across experimental conditions.
C19orf44 antibodies can be valuable tools for investigating protein-protein interactions through these methodological approaches:
Co-immunoprecipitation (Co-IP):
Use C19orf44 antibodies for immunoprecipitation of native protein complexes
Starting dilution recommendation: 1:50-1:200 of antibody solution
Use gentle lysis buffers to preserve protein-protein interactions
Confirm antibody suitability for IP applications before proceeding
Include IgG control immunoprecipitations to identify non-specific interactions
Proximity ligation assay (PLA):
Combine C19orf44 antibody with antibodies against suspected interacting partners
Requires antibodies raised in different host species
Provides subcellular localization information for interaction events
Optimization of antibody dilutions is critical (start with 1:200-1:500)
Include appropriate negative controls (single antibody, non-interacting protein pairs)
Immunofluorescence co-localization:
Use C19orf44 antibodies in combination with antibodies against potential interactors
Apply appropriate spectral unmixing for multi-color imaging
Implement quantitative co-localization analysis (Pearson's coefficient, Manders' overlap)
Control for random co-localization through spatial randomization tests
Consider super-resolution microscopy for detailed interaction studies
Protein complex analysis:
Apply C19orf44 antibodies for Western blot analysis of native protein complexes
Consider blue native PAGE or gradient gel approaches
Use chemical crosslinking to stabilize transient interactions
Combine with mass spectrometry for unbiased interactome analysis
Validate key interactions through reciprocal co-immunoprecipitation
These methodological approaches enable researchers to investigate the functional protein interaction network of C19orf44, potentially revealing insights into its biological roles and mechanisms of action.
When designing immunohistochemical studies to map C19orf44 tissue distribution, researchers should consider these methodological aspects:
Tissue selection and preparation:
Include diverse tissue types for comprehensive distribution profiling
Consider developmental stages for temporal expression analysis
Use standardized fixation protocols (10% neutral buffered formalin is recommended)
Optimize fixation time to preserve antigenicity while maintaining morphology
Process tissue microarrays (TMAs) for high-throughput screening across multiple tissues
Antibody selection and validation:
Use antibodies validated specifically for IHC applications (e.g., HPA041683, dilution 1:200-1:500)
Validate antibody specificity using positive controls (L02 cells, liver tissue)
Include peptide competition controls to confirm specificity
Consider using multiple antibodies targeting different epitopes for cross-validation
Staining protocol optimization:
Systematically compare different antigen retrieval methods
Test both chromogenic and fluorescent detection systems
Incorporate double-staining with cell type-specific markers
Use automated staining platforms when possible to enhance reproducibility
Implement stringent washing procedures to minimize background
Data collection and analysis:
Establish a standardized scoring system before beginning analysis
Capture high-resolution images of representative areas
Document both intensity and subcellular localization patterns
Use digital pathology tools for quantitative assessment
Correlate IHC findings with available transcriptomic data
Comprehensive reporting:
Document complete methodological details for reproducibility
Present findings in the context of normal versus pathological tissues
Include detailed descriptions of subcellular localization
Report both positive and negative findings across tissue types
Provide access to representative images for all tissues examined
By implementing these methodological considerations, researchers can generate comprehensive and reliable data on the tissue distribution patterns of C19orf44, contributing to better understanding of its physiological roles.
When confronted with contradictory results from different C19orf44 antibodies, researchers should implement this systematic analytical approach:
Antibody characteristics analysis:
Methodological comparison:
Document exact protocols used with each antibody
Analyze differences in sample preparation, dilutions, and detection methods
Consider application-specific variations (WB vs. IHC optimization)
Review incubation conditions and blocking reagents
Identify potential procedural sources of discrepancy
Biological interpretation framework:
Consider potential detection of different splice variants
Evaluate post-translational modifications affecting epitope accessibility
Assess potential protein-protein interactions masking epitopes
Review tissue-specific expression patterns and protein conformation
Analyze subcellular localization differences
Validation experiments:
Test both antibodies on identical samples simultaneously
Implement genetic approaches (siRNA, CRISPR) for specificity confirmation
Use recombinant protein with known sequence as a control
Perform peptide competition assays with immunizing antigens
Consider mass spectrometry validation of detected bands
Literature integration:
Compare findings with published literature on C19orf44
Consult antibody validation repositories and databases
Reach out to authors of key publications for technical insights
Consider collaborative cross-laboratory validation
| Contradiction Type | Analysis Approach | Resolution Method |
|---|---|---|
| Different molecular weights | Analyze potential splice variants or PTMs | Mass spectrometry identification of bands |
| Differential tissue staining | Compare epitope accessibility across tissues | Perform modified fixation and retrieval tests |
| Subcellular localization differences | Evaluate epitope masking in specific compartments | Combine with fractionation and immunoblotting |
| Presence/absence discrepancy | Assess detection sensitivity thresholds | Implement genetic knockdown validation |
Optimizing sample preparation is critical for reliable C19orf44 detection across different applications:
Cell/tissue lysis for Western blot:
Use RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS)
Include fresh protease inhibitor cocktail to prevent degradation
Perform mechanical disruption (sonication or homogenization) to ensure complete lysis
Clarify lysates by centrifugation (14,000 × g, 15 minutes, 4°C)
Determine protein concentration using BCA or Bradford assay
Store aliquoted samples at -80°C to avoid freeze-thaw cycles
Tissue preparation for immunohistochemistry:
Fix tissues in 10% neutral buffered formalin for 24-48 hours
Avoid overfixation which can mask epitopes
Process and embed in paraffin following standard protocols
Section at 4-5 μm thickness for optimal antibody penetration
Use positively charged slides to prevent tissue detachment
Include known positive control tissues (liver) in the same block when possible
Cell preparation for immunocytochemistry:
Grow cells on coated coverslips or chamber slides
Fix with 4% paraformaldehyde (10-15 minutes at room temperature)
Permeabilize with 0.1-0.5% Triton X-100 in PBS (5-10 minutes)
Store in PBS at 4°C if not proceeding immediately
Process all experimental conditions simultaneously to ensure comparability
Sample denaturation for SDS-PAGE:
These optimized sample preparation methods ensure consistent and reproducible detection of C19orf44 across different experimental platforms while minimizing artifacts and false negative results.
Application-specific validation strategies are essential when using C19orf44 antibodies across different experimental platforms:
Western Blot validation:
Immunohistochemistry validation:
Optimize antigen retrieval methods (citrate vs. EDTA buffer)
Include positive and negative tissue controls in each run
Perform peptide competition assays to confirm specificity
Compare staining patterns with mRNA expression data
Evaluate subcellular localization consistency
Immunocytochemistry validation:
Compare different fixation methods (PFA, methanol, acetone)
Optimize permeabilization conditions
Include blocking peptide controls
Correlate with Western blot expression in same cell lines
Confirm subcellular localization with organelle markers
Test signal specificity after siRNA knockdown
ELISA validation:
Generate standard curves with recombinant protein
Determine assay detection limits and dynamic range
Assess intra- and inter-assay coefficients of variation
Confirm sample matrix compatibility
Evaluate recovery of spiked standards
Test linearity of dilution across sample types
| Application | Primary Validation Method | Secondary Validation | Quality Control Indicator |
|---|---|---|---|
| Western Blot | Single band at 66-71 kDa | Knockdown control | Band intensity proportional to protein loading |
| IHC | Positive control staining | Blocking peptide competition | Consistent subcellular localization |
| ICC | Subcellular localization | siRNA validation | Signal-to-noise ratio |
| ELISA | Standard curve linearity | Spike recovery | Coefficients of variation <15% |
This application-specific validation approach ensures that C19orf44 antibodies perform optimally across different experimental contexts, enhancing data reliability and reproducibility.
Implementing multiplexed detection of C19orf44 alongside other proteins requires these methodological considerations:
Fluorescence multiplexing in microscopy:
Select primary antibodies from different host species (rabbit anti-C19orf44 with mouse/goat antibodies against other targets)
Use spectrally distinct fluorophores with minimal overlap
Implement sequential staining for antibodies from same species
Apply appropriate controls for each antibody individually
Consider tyramide signal amplification for low abundance targets
Utilize spectral unmixing for closely overlapping fluorophores
Multiplex immunoblotting approaches:
Sequential probing with stripping between antibodies
Simultaneous detection using differentially labeled secondary antibodies
Digital multiplex Western blot platforms
Fluorescence-based Western detection systems
Consider protein molecular weight when selecting combinations
Mass cytometry/Imaging mass cytometry:
Metal-conjugated antibodies for highly multiplexed detection
Validate each antibody individually before multiplexing
Implement comprehensive compensation controls
Ensure antibody stability after metal conjugation
Apply appropriate clustering and visualization algorithms
Use dimensionality reduction techniques for data interpretation
Proximity ligation assays:
Combine C19orf44 antibody with antibodies against interaction partners
Optimize primary antibody concentrations individually
Include appropriate negative controls (non-interacting protein pairs)
Consider dual recognition PLA to enhance specificity
Implement quantitative analysis of interaction signals
Multiplexed immunoassays (Luminex/MSD):
Develop capture and detection antibody pairs
Validate assay specificity with recombinant proteins
Determine cross-reactivity profiles
Optimize sample dilution to ensure detection within linear range
Include standard curves for each target protein
These methodological approaches enable simultaneous analysis of C19orf44 alongside other proteins of interest, facilitating studies of coexpression patterns, protein interactions, and pathway analyses within the same samples.
For comprehensive epitope mapping of C19orf44 antibodies, researchers should implement this systematic approach:
In silico analysis:
Analyze the immunogen sequence used for antibody generation (e.g., Accession Number: BC027869)
Perform computational prediction of potential antigenic regions
Assess conservation across species for cross-reactivity prediction
Evaluate protein secondary structure and accessibility
Identify potential post-translational modification sites that might affect binding
Peptide array mapping:
Generate overlapping peptide series spanning C19orf44 sequence
Synthesize peptides of 15-20 amino acids with 5-10 amino acid overlap
Immobilize peptides on membrane or microarray format
Probe with C19orf44 antibody followed by appropriate detection
Identify positive signals corresponding to specific peptide sequences
Deletion/mutation mapping:
Generate truncated or domain-specific recombinant C19orf44
Express point mutations at predicted antibody binding sites
Test antibody reactivity against mutant proteins by Western blot
Compare binding affinities using ELISA or surface plasmon resonance
Correlate structural changes with binding efficiency
Cross-reactivity profiling:
Test reactivity against related proteins or homologs
Evaluate species cross-reactivity experimentally
Perform competition assays with related peptides/proteins
Determine minimal epitope length required for binding
Assess impact of adjacent sequences on binding affinity
Conformational epitope analysis:
Compare native vs. denatured protein recognition
Utilize hydrogen-deuterium exchange mass spectrometry
Apply chemical crosslinking followed by mass spectrometry
Consider crystallography of antibody-antigen complexes
Use circular dichroism to assess structural changes upon binding
This systematic epitope mapping approach provides critical information about antibody specificity, potential cross-reactivity, and optimal application conditions, ultimately enhancing the reliability of experimental results with C19orf44 antibodies.
When selecting between different C19orf44 antibody clones for specific research applications, consider these critical factors:
Epitope specificity and location:
Determine the antibody's target epitope region when available
Consider epitope conservation across species for comparative studies
Evaluate whether epitopes are sensitive to fixation/denaturation
Assess potential masking by protein-protein interactions
Select epitopes appropriate for the biological question (functional domains vs. general detection)
Validation status for specific applications:
Technical specifications and format:
Compare host species (most C19orf44 antibodies are rabbit polyclonal)
Assess antibody concentration and formulation (typically in PBS with 0.02% sodium azide and 50% glycerol)
Consider conjugated versions for direct detection if available
Evaluate lot-to-lot consistency reports
Review storage requirements and shelf-life data
Experimental evidence and literature support:
Search for published studies using specific antibody catalog numbers
Contact authors who have successfully used the antibody
Consider publication record as evidence of reliability
Evaluate figure quality in published applications
Assess whether contradictory results exist with specific clones
Experimental design compatibility:
Consider compatibility with other antibodies for co-staining experiments
Evaluate antibody performance in your specific sample types
Assess background levels in relevant tissues/cells
Consider detection method compatibility
Evaluate cost-effectiveness for large-scale studies