CAPSL binds calcium via its EF-hand domains, modulating intracellular calcium signaling pathways critical for cellular processes such as differentiation and ion transport .
Type 1 Diabetes: The CAPSL gene resides in the same linkage disequilibrium block as IL7R, a locus strongly associated with type 1 diabetes susceptibility .
Multiple Symmetric Lipomatosis (MSL): A heterozygous nonsense mutation (c.25C > T, p.R9*) in CAPSL was identified in a four-generation MSL family, leading to haploinsufficiency and altered adipocyte differentiation .
Retinal Angiogenesis: Suppression of CAPSL in retinal endothelial cells disrupts MYC signaling, impairing tube formation and proliferation—key mechanisms in retinal vascular diseases like Familial Exudative Vitreoretinopathy (FEVR) .
CAPSL Human is utilized in:
Biochemical Studies: Investigating calcium-dependent signaling mechanisms.
Disease Modeling: Studying MSL, diabetes, and retinal disorders .
Control Experiments: Recombinant fragments (e.g., aa 107–157) serve as blocking controls in immunohistochemistry and Western blotting .
Tissue Distribution: Low baseline expression in undifferentiated adipocytes, with induced expression during early adipogenesis .
Subcellular Localization: Predominantly cytoplasmic, as per the Human Protein Atlas .
CAPSL knockout in 3T3-L1 adipocytes enhanced differentiation efficiency, while overexpression suppressed it. This suggests a regulatory role in early adipocyte development .
Patients with CAPSL mutations exhibited abnormal lipid deposition but no neuromuscular symptoms, distinguishing MSL from other metabolic disorders .
CAPSL knockdown in endothelial cells reduced proliferation and tube formation by 40–60%, linking it to MYC pathway dysregulation .
The Carolina Pragmatic Trials Laboratory (CAPSL) is a specialized research entity that supports the design and statistical analysis of pragmatic trials testing interventions in real-world settings. CAPSL incorporates the expertise of senior academic and consulting biostatisticians, post-doctoral researchers, and advanced graduate students to contribute novel clinical and translational science solutions. The laboratory specifically focuses on translating scientific discoveries into new treatments and approaches to medical care while simultaneously addressing health equity concerns for historically marginalized groups .
CAPSL has two primary focus areas that are particularly relevant to human research studies:
Cluster randomized trials with increasingly complex structures, including multiple periods, multiple levels, and multi-component interventions
Marginal modeling methods for stepped wedge designs and other sophisticated research approaches
Effective experimental design requires clearly defined variables from the very beginning of the research process. Most studies examining relationships between phenomena must carefully define:
Independent variable: The stimulus, condition, or intervention being manipulated and controlled by the researcher
Dependent variable: The subsequent effect or measured outcome resulting from changes in the independent variable
Beyond these primary variables, rigorous human research experimental design must also account for:
Control variables: Factors that must be held constant across conditions
Confounding variables: Unintended factors that might influence the relationship between independent and dependent variables
Extraneous variables: External factors that need to be controlled or accounted for in the analysis
Proper conceptualization of all variables during the planning stage is essential for designing valid experimental protocols that can produce meaningful, reliable results in human research contexts.
Under 45 CFR 46, human subjects research has specific definitions that determine when institutional review and protections are required:
"Research" is defined as a systematic investigation designed to develop or contribute to generalizable knowledge, including research development, testing, and evaluation.
A "Human Subject" is defined as a living individual about whom an investigator conducting research obtains:
Cluster randomized trials represent an increasingly important methodological approach in human research, particularly when interventions must be administered at a group level. Based on CAPSL's expertise, effective implementation involves addressing several key factors:
Common Design Types:
Data Collection Approaches:
Cohort samples (following the same participants)
Repeated cross-sectional samples (different participants at each time point)
Implementation Settings:
Cluster randomized trials can be conducted in various "cluster" settings, including:
Setting Type | Characteristics | Special Considerations |
---|---|---|
Hospitals | Multiple departments, shifts, teams | Patient flow, staff turnover |
Primary care practices | Patient panels, provider teams | Scheduling constraints, EMR systems |
Nursing homes | Residential units, care teams | Frailty of population, ethical concerns |
Community settings | Geographic boundaries, social networks | Contamination between groups |
Correctional facilities | Housing units, programs | Security protocols, transient populations |
Statistical Challenges:
When implementing cluster randomized trials, researchers must address:
Small numbers of clusters, which create challenges for valid design and statistical analysis
Intracluster correlation, which reduces effective sample size
The need for specialized analytic approaches that account for clustering effects
Contradictions in data represent a significant challenge to research quality. A structured approach to identifying and addressing contradictions involves understanding their patterns and implementing appropriate assessment frameworks:
Contradictions in data quality are typically understood as impossible combinations of values in interdependent data items. While handling a single dependency between two data items is well established, more complex interdependencies require more sophisticated approaches .
A formal notation for contradiction patterns using three parameters (α, β, θ) has been proposed:
α: the number of interdependent items
β: the number of contradictory dependencies defined by domain experts
θ: the minimal number of required Boolean rules to assess these contradictions
The implementation of a structured classification for contradiction checks allows:
Scoping of different contradiction patterns across multiple domains
Effective support for implementing generalized contradiction assessment frameworks
Improved handling of multidimensional interdependencies within health data sets
Various funding mechanisms exist to support innovative human research, particularly in social, behavioral, and public health domains. For example:
The CAPS Research Awards (formerly CAPS-HIV Innovative Grants) provides support for innovative research with an award amount of $50,000. These awards support either:
Priority funding areas include social, behavioral, and public health-related approaches to:
Reduce the incidence of disease
Develop innovative strategies for next-generation therapies
Address comorbidities, coinfections, and complications
Special emphasis is placed on:
Populations and regions experiencing disproportionate impact
Vulnerabilities and protective factors associated with intersecting identities
Translational research that ensures effective prevention and care strategies
CAPSL specializes in statistical methods for pragmatic trials in real-world settings, with particular expertise in complex trial designs. Key methodological approaches include:
Marginal Modeling Methods:
CAPSL has advanced marginal modeling methods for analyzing data from stepped wedge designs and other complex trial structures. These methods are particularly valuable when working with:
Specialty Expertise Available:
CAPSL's panel of statistical experts provides collaborative support in numerous specialized areas relevant to human research:
Statistical Specialty | Application to Human Research |
---|---|
Causal inference | Establishing treatment effects in observational studies |
Clinical trials | Randomization, blinding, endpoint analysis |
Genomics analysis | Biomarker identification, precision medicine |
Imaging | Quantitative analysis of medical imagery |
Survey sampling | Representative population sampling techniques |
Time-to-event data | Survival analysis, time-dependent covariates |
This range of expertise allows CAPSL to contribute novel clinical and translational science solutions for the statistical design and analysis of human research across diverse contexts and populations .
Before any human subject research can commence, specific review processes must be completed:
All human subject research must undergo proper review and approval by authorized Human Research Protection Program (HRPP) personnel. This applies to all forms of research activity, including recruitment, consent, and data collection .
The review process typically follows these steps:
Determination if the protocol meets the definition of research
If deemed research, evaluation to determine if it meets the definition of human subjects research
For protocols meeting both definitions, submission of a complete protocol packet for review
As part of the determination process, the HRPP and IRB may:
Recommend approval
Require modifications
Withhold approval
The protocol packet must include comprehensive documentation as outlined by the specific research institution. For specific requirements, researchers should contact their institution's HRPP Point of Contact .
Ethical considerations for research involving marginalized populations require special attention to vulnerabilities, protections, and equitable benefits. Based on the available information:
CAPSL specifically aims to "achieve translational benefits, tackle translational roadblocks, and address health equity—all in support of TraCS-wide efforts to translate scientific discoveries into new treatments and approaches to medical care while reducing health disparities for historically marginalized groups" .
When designing research involving vulnerable populations, researchers should:
Ensure equitable selection of research subjects
Implement additional safeguards to protect rights and welfare
Consider the intersection of identities based on race, sexual orientation, class, gender, mental health, geography, socioeconomic status, and other social factors
Address potential power imbalances in the research relationship
Ensure that benefits of research extend to the communities being studied
Capsule-based methodologies provide several advantages in human research studies, particularly in pharmaceutical and biomedical contexts:
Methodological Advantages:
Allow for uncompressed powders, enabling quicker dissolution and absorption compared to tablets, which may provide more accurate pharmacokinetic data
Offer versatility to prepare precise doses for various administration routes (oral, inhalation, rectal, or to be diluted for vaginal, rectal, oral, or topical use)
Can be designed to alter drug release rates, providing options for time-course studies
Enable masking of unpleasant tastes, aromas, or appearance of drugs, potentially improving participant compliance and reducing bias in studies
Research Limitations to Consider:
Subject to the effects of relative humidity and microbial contamination, requiring controlled storage conditions
More expensive than alternative formulations, impacting research budgets
May be difficult for some research participants to swallow
Can be tampered with, requiring additional security measures in certain research contexts
For human research applications, these properties make capsules particularly valuable for studies requiring:
Precise dose control
Participant blinding
Flexible administration routes
Modified release profiles
A formal notation system using parameters (α, β, θ) helps researchers conceptualize and implement contradiction checks:
α represents the number of interdependent items
β represents the number of contradictory dependencies defined by domain experts
θ represents the minimal number of required Boolean rules to assess these contradictions
Analysis of data quality assessment tools reveals that most existing packages implement only basic contradiction checks, classified as (2,1,1) - meaning they only check relationships between two variables using a single rule .
More complex contradiction patterns, particularly in biobank and COVID-19 research domains, demonstrate that the minimum number of Boolean rules required might be significantly lower than the number of described contradictions, allowing for more efficient implementations .
Benefits of implementing structured contradiction checks include:
Improved data quality through systematic identification of impossible value combinations
Enhanced efficiency in data cleaning and validation processes
Better handling of complex multidimensional interdependencies
Support for implementing generalized contradiction assessment frameworks across multiple domains
Calcyphosine-like (CAPSL) was identified as a protein expressed in various tissues, including adipose tissue. The human recombinant form of CAPSL is produced in Escherichia coli (E. coli) and is a single, non-glycosylated polypeptide chain containing 228 amino acids. It has a molecular mass of approximately 26.3 kDa and includes a 20 amino acid His-Tag at the N-terminus, which aids in its purification through chromatographic techniques .
CAPSL has been implicated in several biological processes, particularly in adipogenesis and lipogenesis. Studies have shown that CAPSL is regulated in conditions such as Multiple Symmetric Lipomatosis (MSL), a rare adipose tissue disorder characterized by the disproportionate accumulation of subcutaneous adipose tissue . CAPSL’s role in adipocyte biology suggests that it may be involved in the regulation of autophagy, a process crucial for cellular homeostasis and energy balance.
Research has highlighted the potential involvement of CAPSL in various medical conditions. For instance, dysfunction of the CAPSL gene has been associated with Familial Exudative Vitreoretinopathy (FEVR), a genetic disorder affecting retinal angiogenesis. Studies have shown that CAPSL depletion in human retinal microvascular endothelial cells impairs tube formation, cell proliferation, and migration, which are critical for proper vascular development .
The recombinant form of CAPSL is used in various research applications to study its function and role in different biological processes. By producing CAPSL in a recombinant form, researchers can investigate its interactions, regulatory mechanisms, and potential therapeutic applications. The ability to produce CAPSL recombinantly also facilitates the development of diagnostic tools and treatments for conditions associated with its dysfunction.