CASP9 Antibody, HRP conjugated

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Description

Introduction to CASP9 Antibody, HRP Conjugated

CASP9 Antibody, HRP conjugated is a specialized immunological reagent designed for the detection of caspase-9 protein in various biological samples. Caspase-9 functions as an initiator caspase in the intrinsic apoptotic pathway, playing a crucial role in programmed cell death mechanisms. The conjugation of anti-caspase-9 antibodies with horseradish peroxidase (HRP) enables direct detection of the target protein through enzyme-catalyzed reactions, eliminating the need for secondary antibodies and improving assay efficiency. These conjugated antibodies are widely used in research studying apoptosis, neurodegenerative diseases, cancer, and cardiovascular disorders .

HRP conjugation provides significant advantages for detection sensitivity and procedural simplicity. When the antibody binds to its target (caspase-9), the attached HRP enzyme catalyzes the oxidation of chromogenic or chemiluminescent substrates, producing detectable signals. This direct detection system enhances assay sensitivity while reducing background noise and cross-reactivity issues that can occur with multi-step detection methods .

CASP9 (Caspase-9) Properties

Caspase-9 is a cysteine-aspartic protease comprising three domains: an N-terminal pro-domain containing the caspase activation domain (CARD) motif, a large catalytic subunit, and a small catalytic subunit. Human caspase-9 is encoded by the CASP9 gene, producing a protein with a molecular weight of approximately 46 kDa in its inactive proenzyme form . Upon activation, caspase-9 undergoes proteolytic processing, generating cleaved forms of approximately 37 kDa (D315 cleavage) or 35 kDa (D330 cleavage) .

The activation of caspase-9 occurs primarily within the apoptosome, a heptameric structure comprising Apaf-1 (Apoptotic protease activating factor 1) and cytochrome c. This activation is triggered by mitochondrial outer membrane permeabilization and cytochrome c release into the cytosol . Once activated, caspase-9 cleaves and activates downstream effector caspases (caspase-3, -6, and -7), initiating the caspase cascade responsible for executing apoptosis .

Caspase-9 exhibits tissue-specific expression patterns, with highest levels detected in the brain and heart, moderate expression in liver, pancreas, and skeletal muscle, and lower levels in other tissues . Subcellularly, caspase-9 is found in the mitochondria, cytosol, and nucleus .

HRP Conjugation Technology

Horseradish peroxidase (HRP) is a 44 kDa glycoprotein that catalyzes the transfer of electrons from substrate molecules to hydrogen peroxide, producing oxidized substrates and water. This enzyme contains a heme group at its active site, which enables the oxidation-reduction reactions used in immunodetection methods .

The conjugation of HRP to antibodies typically focuses on linking through the lysine residues on HRP because there are only six of them, and their modification does not adversely affect enzyme activity . Several methods are employed for HRP conjugation to antibodies:

  1. Periodate Method: The most common approach involves oxidizing the polysaccharide residues in HRP with sodium periodate to produce reactive aldehyde groups. These aldehydes then react with amino groups in the antibody molecule to form Schiff bases, which are subsequently stabilized through reduction .

  2. Maleimide-Based Conjugation: This method involves introducing thiol groups into antibodies and using maleimide-activated HRP to form stable thioether bonds.

  3. Glutaraldehyde Method: A two-step procedure using glutaraldehyde as a cross-linking agent between the antibody and enzyme.

The small size of HRP (44 kDa) allows for greater penetration into sample tissues and cells and reduces the likelihood of interfering with conjugated antibody function. Additionally, HRP possesses four lysines available for conjugation, improving the efficiency of cross-linking to target antibodies .

Available Manufacturer Products

Several manufacturers produce CASP9 Antibody, HRP conjugated products with varying specifications. Notable products include:

  1. Bioss (bs-20773R-HRP): A rabbit polyclonal antibody conjugated with HRP, targeting human caspase-9. This antibody recognizes an epitope within amino acids 231-330 of the 416-amino acid human caspase-9 protein .

  2. Santa Cruz Biotechnology (sc-56076 HRP): A mouse monoclonal antibody (clone 96.1.23) conjugated with HRP, recognizing the prodomain of caspase-9 of human origin. This antibody detects both the proenzyme (46 kDa) and activated form (35 kDa) of caspase-9 .

  3. Santa Cruz Biotechnology (sc-81663 HRP): A mouse monoclonal antibody (clone 9CSP01) conjugated with HRP, with reactivity against mouse, rat, and human caspase-9 .

These products are manufactured to high standards, ensuring consistency and reliability in research applications.

Western Blotting

Western blotting represents one of the most common applications for CASP9 Antibody, HRP conjugated. This technique allows for the detection, localization, and semi-quantification of caspase-9 protein in complex biological samples. The HRP conjugation eliminates the need for secondary antibody incubation, streamlining the protocol and potentially reducing background signal .

In typical Western blot applications, CASP9 Antibody, HRP conjugated can detect both the inactive pro-caspase-9 (46 kDa) and its cleaved/activated forms (37/35 kDa). This dual detection capability makes these antibodies particularly valuable for monitoring caspase activation during apoptosis. For example, when comparing untreated cells with those exposed to apoptotic inducers like staurosporine or etoposide, the appearance of the cleaved form indicates caspase-9 activation .

Research findings have demonstrated that dilutions ranging from 1:300 to 1:5000 are effective for Western blotting, depending on the specific antibody and sample type. The Bioss antibody (bs-20773R-HRP) is recommended at dilutions of 1:300-5000, while the Santa Cruz antibody (sc-56076 HRP) works optimally at 1:100-1000 .

Enzyme-Linked Immunosorbent Assay (ELISA)

CASP9 Antibody, HRP conjugated products are effectively utilized in ELISA applications for quantitative measurement of caspase-9 levels in various sample types. The direct HRP conjugation simplifies the assay procedure by eliminating the secondary antibody step, potentially improving assay performance and reducing variability .

Commercial ELISA kits incorporating HRP-conjugated CASP9 antibodies typically employ a sandwich ELISA format. In this approach, wells are coated with a capture antibody specific for caspase-9, followed by sample addition, and detection using an HRP-conjugated anti-caspase-9 antibody. Detection limits for these assays vary by manufacturer but generally range from 9.375-62.5 pg/ml for sensitive kits .

For research applications, recommended dilutions for CASP9 Antibody, HRP conjugated in ELISA typically range from 1:500 to 1:1000, as specified for the Bioss antibody (bs-20773R-HRP) .

Immunohistochemistry (IHC)

Immunohistochemical analysis using CASP9 Antibody, HRP conjugated enables the visualization of caspase-9 expression and localization in tissue sections. This application is particularly valuable for studying caspase-9 distribution in normal tissues and its alterations in pathological conditions such as neurodegenerative diseases, cancer, and cardiovascular disorders .

For paraffin-embedded tissue sections (IHC-P), recommended dilutions typically range from 1:50 to 1:500, depending on the specific antibody and tissue type. The Bioss antibody (bs-20773R-HRP) is recommended at dilutions of 1:200-400 for IHC-P applications . For frozen tissue sections (IHC-F), slightly different dilutions may be optimal, with the Bioss antibody recommended at 1:100-500 .

Research studies have demonstrated the utility of immunohistochemistry with CASP9 antibodies for analyzing post-mortem changes in skeletal and cardiac muscles. These investigations have revealed a temporal sequence where the "initiator" caspase-9 activates before the "executioner" caspase-3, with immunoreactivity patterns correlating with post-mortem intervals .

Other Detection Methods

In addition to the applications described above, CASP9 Antibody, HRP conjugated products can be utilized in several other detection methods:

  1. Immunofluorescence (IF): Although traditional HRP conjugates are not directly suitable for fluorescence applications, some manufacturers offer dual-labeled antibodies that combine HRP with fluorophores for greater flexibility.

  2. Immunoprecipitation (IP): Some CASP9 Antibody, HRP conjugated products can be used for immunoprecipitation followed by HRP-based detection, though this is less common than other applications.

  3. Flow Cytometry: Specialized protocols allow for the use of HRP-conjugated antibodies in flow cytometry applications, particularly when combined with tyramide signal amplification systems.

  4. Multiplex Assays: Advanced protocols combining CASP9 Antibody, HRP conjugated with other detection systems enable simultaneous analysis of multiple proteins in complex samples.

Sensitivity and Detection Limits

The sensitivity of CASP9 Antibody, HRP conjugated products varies by application and manufacturer. In ELISA applications, detection limits typically range from 9.375-62.5 pg/ml, providing sufficient sensitivity for most research applications .

For Western blotting, sensitivity depends on various factors including antibody affinity, HRP conjugation efficiency, and detection substrate. Enhanced chemiluminescence (ECL) substrates can significantly improve detection limits, allowing visualization of picogram quantities of caspase-9 protein .

Comparative studies have demonstrated that HRP-conjugated antibodies generally offer comparable or superior sensitivity to unconjugated primary antibodies followed by HRP-conjugated secondary antibodies, while simplifying the detection protocol .

Specificity and Cross-Reactivity

CASP9 Antibody, HRP conjugated products show high specificity for their target protein, with minimal cross-reactivity with other caspase family members or unrelated proteins. This specificity has been validated through various methods including Western blotting against recombinant caspases and immunostaining of tissues from caspase-9 knockout mice .

The specificity of these antibodies is particularly important given the structural similarities among caspase family members. Several key metrics validate the specificity of commercial CASP9 Antibody, HRP conjugated products:

  1. Recognition of appropriate molecular weight bands (46 kDa for pro-caspase-9, 37/35 kDa for cleaved forms)

  2. Differential staining patterns in tissues known to express varying levels of caspase-9

  3. Absence of signal in negative control samples or knockout tissues

  4. Specific immunoreactivity with recombinant caspase-9 but not other caspase family members

Precision and Reproducibility

CASP9 Antibody, HRP conjugated products demonstrate good precision in both intra-assay and inter-assay comparisons. Data from ELISA applications show coefficient of variation (CV) values typically below 6.5%, indicating high reproducibility .

For example, the Rat CASP9 ELISA Kit featuring HRP-conjugated detection antibody reports intra-assay precision with CV values ranging from 4.79-5.72% and inter-assay precision with CV values of 4.95-6.42% . These values indicate excellent reproducibility suitable for both research and potential diagnostic applications.

Recovery and Linearity

Recovery studies for CASP9 detection using HRP-conjugated antibodies demonstrate excellent performance across various sample types. For serum samples, recovery rates typically range from 93-103% (average 98%), while EDTA plasma shows 88-104% (average 94%) and heparin plasma exhibits 91-104% (average 99%) .

Linearity assessments with serial dilutions (1:2, 1:4, and 1:8) of samples containing known amounts of caspase-9 show consistent recovery ranges, typically 80-100% across all dilution levels. This demonstrates the ability of these antibodies to accurately quantify caspase-9 across a range of concentrations .

To ensure optimal performance of CASP9 Antibody, HRP conjugated products, several handling recommendations should be followed:

  1. Avoid repeated freeze-thaw cycles, which can cause significant activity loss. Significant activity loss occurs after 2-4 freeze-thaw cycles, suggesting storage at +4°C rather than repeated freezing/thawing for antibodies in regular use .

  2. Use aseptic technique when handling antibody solutions to prevent microbial contamination.

  3. Equilibrate refrigerated antibodies to room temperature before opening to prevent condensation.

  4. Return antibodies to recommended storage conditions promptly after use.

  5. Follow manufacturer-recommended dilution ranges for specific applications to ensure optimal signal-to-noise ratios.

  6. When using in conjunction with chemiluminescent substrates, minimize exposure to light prior to detection.

Neurodegenerative Disease Research

CASP9 Antibody, HRP conjugated products have proven valuable in neurodegenerative disease research, particularly for studying apoptotic mechanisms involved in disease progression. Studies utilizing these antibodies have revealed significant findings regarding caspase-9's role in various neurodegenerative conditions:

In Amyotrophic Lateral Sclerosis (ALS), research using CASP9 antibodies has demonstrated that caspase-9 plays a crucial role in disease progression. Kiechle et al. identified increased expression of cleaved caspase-9 in post-mortem brain samples from patients with Huntington's disease, particularly in striatal neurons, indicating activation of intrinsic apoptotic signaling contributing to neuronal death in end-stage disease .

Studies examining caspase-9 activation in transgenic mouse models of ALS revealed that inhibition of caspase-9 in motor neurons significantly attenuates disease progression. X-linked inhibitor of apoptosis protein (XIAP), which inhibits caspase-9, slowed disease progression without delaying onset when expressed in spinal motor neurons of mutant SOD1 mice .

Furthermore, immunohistochemical analysis using anti-active caspase-9 antibodies on post-mortem human samples showed obvious caspase-9 activation in motor neurons of ALS patients but not in controls. Quantitative analysis revealed that caspase-9-like activity in ALS anterior horn was 230.2% of control levels, suggesting caspase-9 as a potential therapeutic target for human ALS patients .

Cancer Studies

CASP9 Antibody, HRP conjugated products have contributed significantly to cancer research, particularly in studies examining the role of apoptosis dysregulation in tumor development and progression. Recent findings indicate that caspase-9 may have tumor-suppressive functions in certain contexts.

A notable study focusing on triple-negative breast cancer (TNBC) utilized caspase-9 detection to demonstrate that caspase-9 expression is significantly reduced in TNBC patients compared to non-TNBC patients. Analysis of patient data revealed that lower expression of caspase-9 significantly correlates with shorter relapse-free survival and shorter distant metastasis-free survival, suggesting its potential role as a prognostic marker .

Further experimental studies showed that caspase-9 activation suppresses metastatic behavior of MDA-MB-231 breast cancer cells. Molecular analysis using antibody detection methods revealed downregulation of epithelial-mesenchymal transition and migratory markers in caspase-9 activated cells. Additionally, pre-treatment with activated caspase-9 sensitized cells to doxorubicin chemotherapy, enhancing its effectiveness .

These findings highlight the potential anti-metastatic properties of caspase-9 and suggest avenues for developing novel therapeutic approaches for metastatic breast cancer, although additional studies are needed to elucidate the exact mechanisms involved .

Cardiovascular Research

CASP9 Antibody, HRP conjugated products have been instrumental in cardiovascular research, particularly in studies examining apoptotic mechanisms in heart disease and vascular disorders. Immunohistochemical analysis of caspase-9 in cardiac tissues has provided valuable insights into the role of apoptosis in various cardiovascular pathologies.

Studies examining caspase-9 expression and activation in cardiomyocytes have demonstrated its involvement in ischemia-reperfusion injury, heart failure, and cardiac remodeling. Immunohistochemical staining patterns reveal that caspase-9 is highly expressed in heart tissue, particularly in adult cardiac muscle cells .

A particularly interesting application involves the use of CASP9 antibodies in post-mortem studies of cardiac tissue. Research examining caspase-9 immunoreactivity patterns in cardiac muscles collected at different time points after death has shown a temporal correlation with post-mortem interval, potentially providing a forensic tool for estimating time since death .

In these studies, cardiac muscle samples obtained immediately after death showed no immunoreactivity to caspase-9, while samples collected at 4 hours post-mortem displayed very low immunoreactivity. Significant increases in immunoreactivity were observed at 8 hours post-mortem, with further increases at 12 hours, followed by stable but slightly decreased levels up to 24 hours and significant decreases at 72 hours post-mortem .

Other Clinical Applications

Beyond the major application areas discussed above, CASP9 Antibody, HRP conjugated products have demonstrated utility in several other clinical research domains:

  1. Forensic Applications: As mentioned previously, the temporal patterns of caspase-9 immunoreactivity in post-mortem tissues correlate with time since death, providing potential forensic applications for estimating post-mortem interval .

  2. Developmental Biology: Studies of neural tube defects have identified CASP9 mutations (G66A, R191G, Y251C, H237P) associated with impaired apoptosis under low folate conditions, suggesting a mechanistic link between folate insufficiency and neural tube defects in cases carrying these mutations .

  3. Immunology Research: Investigation of caspase-9's non-apoptotic functions has revealed its involvement in innate immune responses, suggesting potential applications in immunological disease research .

  4. Cell Therapy Monitoring: The development of inducible caspase-9 (iCasp9) as a safety switch in cell therapy applications has created demand for reliable detection methods using caspase-9 antibodies .

Western Blot Protocol

The following protocol outlines a standard procedure for Western blotting using CASP9 Antibody, HRP conjugated:

Materials Required:

  • Protein samples (cell/tissue lysates)

  • SDS-PAGE gels (10-12% recommended)

  • Transfer equipment and membranes (PVDF recommended)

  • Blocking buffer (5% non-fat dry milk in TBST)

  • CASP9 Antibody, HRP conjugated

  • Chemiluminescent substrate

  • Detection system (film or digital imager)

Procedure:

  1. Prepare protein samples in SDS sample buffer and heat at 95°C for 5 minutes.

  2. Load 20-50 μg protein per lane and separate by SDS-PAGE.

  3. Transfer proteins to PVDF membrane (100V for 1 hour or 30V overnight at 4°C).

  4. Block membrane in 5% non-fat dry milk in TBST for 1 hour at room temperature.

  5. Incubate membrane with diluted CASP9 Antibody, HRP conjugated (1:300-1:5000 depending on specific antibody) in blocking buffer overnight at 4°C.

  6. Wash membrane 3 times with TBST, 5 minutes each.

  7. Apply chemiluminescent substrate and detect signal using appropriate imaging system.

  8. Analyze results, with expected bands at 46 kDa (pro-caspase-9) and 37/35 kDa (cleaved caspase-9).

This protocol has been validated for detecting both basal caspase-9 expression and its activation in response to apoptotic stimuli such as staurosporine (1 μM for 4 hours) or etoposide treatment .

ELISA Protocol

The following protocol outlines a standard procedure for ELISA using CASP9 Antibody, HRP conjugated as a detection antibody:

Materials Required:

  • ELISA microplate (pre-coated with capture antibody)

  • Standards (recombinant caspase-9 protein)

  • Sample dilution buffer

  • CASP9 Antibody, HRP conjugated

  • Antibody dilution buffer

  • TMB substrate solution

  • Stop solution (typically 2N H₂SO₄)

  • Plate reader capable of measuring at 450 nm

Procedure:

  1. Prepare standards and samples in appropriate dilution buffer.

  2. Add 100 μl of standards or samples to appropriate wells and incubate for 2 hours at room temperature.

  3. Wash plate 4 times with wash buffer.

  4. Add 100 μl of diluted CASP9 Antibody, HRP conjugated (typically 1:500-1:1000) to each well and incubate for 1 hour at room temperature.

  5. Wash plate 4 times with wash buffer.

  6. Add 100 μl of TMB substrate solution to each well and incubate for 15-30 minutes in the dark.

  7. Add 100 μl of stop solution to each well.

  8. Read absorbance at 450 nm within 30 minutes.

  9. Calculate results using standard curve.

This protocol can be adapted for different sample types including serum, plasma, and cell culture supernatants. Optimal dilutions may vary by sample type and specific antibody used .

Immunohistochemistry Protocol

The following protocol outlines a standard procedure for immunohistochemistry using CASP9 Antibody, HRP conjugated:

Materials Required:

  • Tissue sections (paraffin-embedded or frozen)

  • Antigen retrieval buffer (typically citrate buffer pH 6.0)

  • Hydrogen peroxide (3% in water)

  • Blocking buffer (typically 5% normal serum in PBS)

  • CASP9 Antibody, HRP conjugated

  • DAB substrate kit

  • Hematoxylin (for counterstaining)

  • Mounting medium

Procedure for Paraffin Sections:

  1. Deparaffinize and rehydrate tissue sections through xylene and graded alcohols.

  2. Perform antigen retrieval (typically heat-induced in citrate buffer pH 6.0).

  3. Block endogenous peroxidase activity with 3% hydrogen peroxide for 10 minutes.

  4. Block non-specific binding with 5% normal serum in PBS for 1 hour.

  5. Incubate with diluted CASP9 Antibody, HRP conjugated (typically 1:50-1:500) overnight at 4°C.

  6. Wash 3 times with PBS, 5 minutes each.

  7. Apply DAB substrate and monitor for color development (typically 1-10 minutes).

  8. Counterstain with hematoxylin, dehydrate, clear, and mount.

This protocol has been validated for detecting caspase-9 expression and activation in various tissue types, including brain, heart, and cancer tissues .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship your order within 1-3 business days of receipt. Delivery time may vary depending on the shipping method or location. Please consult your local distributor for specific delivery time estimates.
Synonyms
APAF-3 antibody; Apoptotic protease Mch-6 antibody; Apoptotic protease-activating factor 3 antibody; CASP-9 antibody; CASP9 antibody; CASP9_HUMAN antibody; Caspase 9 antibody; Caspase-9 subunit p10 antibody; ICE-LAP6 antibody; ICE-like apoptotic protease 6 antibody
Target Names
Uniprot No.

Target Background

Function
Caspase-9 plays a crucial role in the execution of apoptosis. It is activated through a cascade involving Apaf-1, leading to the activation of caspase-3. Caspase-9 promotes apoptosis induced by DNA damage in an ABL1/c-Abl-dependent manner and cleaves poly(ADP-ribose) polymerase (PARP). Isoform 2 lacks activity and acts as a dominant-negative inhibitor of caspase-9.
Gene References Into Functions
  1. CASP9 mutations are linked to recurrent folate-resistant neural tube defects. PMID: 29358613
  2. A study identified rare mutations in the CASP9 gene associated with neural tube defects. The p.Y251C variant impairs the protein's apoptotic function, indicating a loss-of-function variation. Additionally, the p.R191G variant inhibited apoptosis under folate-deficient conditions, highlighting the interplay between genetic and environmental factors in this complex disease. PMID: 29365368
  3. Research suggests that caspase-9 and activated caspase-3 are primary regulators of cell apoptosis in human dental pulp stem cells from deciduous teeth. PMID: 29845240
  4. Low CASP9 expression is associated with colorectal cancer. PMID: 29801534
  5. Findings indicate that miR-96-5p, frequently upregulated in hepatocellular carcinoma (HCC), inhibits apoptosis by targeting CASP9. Therefore, miR-96-5p may serve as a potential therapeutic target for HCC. PMID: 29658604
  6. Germline mutations in CASP9 might contribute to the susceptibility of developing gliomas in a Li-Fraumeni-like family without a TP53 germline mutation. PMID: 27935156
  7. Caspase-9 levels were significantly lower and correlated with oxidant status in patients with polycystic ovary syndrome, while the circulating levels of caspases 3 and 7 were statistically similar in both PCOS and control groups. PMID: 27899026
  8. Research indicates that the apoptotic protease-activating factor 1 (Apaf-1) apoptosome activates caspase-9 in part through sequestering the inhibitory caspase recruitment domains (CARDs) domain. PMID: 28143931
  9. DES1 plays a crucial role in palmitic acid-mediated caspase-9 and caspase-3 activation. PMID: 27364952
  10. CASP9 expression is associated with inhibition of miR-182. PMID: 28298075
  11. CASP-9 polymorphism is associated with primary brain tumors. PMID: 28870924
  12. High CASP9 expression is associated with lung tumorigenesis. PMID: 27197231
  13. Knockdown of HMGI-C resulted in significant induction of apoptosis via the mitochondrial pathway by inducing miR34a and cell cycle arrest in MDA-MB-468 cells in vitro. PMID: 27245202
  14. Results suggest that the formation of the apoptosome, accompanied by the activation of caspase-9, may occur in brains affected by multiple system atrophy (MSA). Furthermore, a mitochondria-dependent apoptotic pathway may contribute to the pathogenesis of MSA. PMID: 27345387
  15. Using recombinant proteins, a study investigated the influence of survivin on the inhibition of caspase-9 by XIAP in vitro. Employing a fluorescence-based assay for apoptosome-stimulated caspase-9 activity, the study demonstrated that survivin had no effect on the inhibition of caspase-9 by XIAP, regardless of the presence or absence of Smac. PMID: 27865841
  16. Data suggest that caspase 9 (CASP9) single nucleotide polymorphism (rs1052576) TT genotype was associated with an increased risk of pathological stage. PMID: 28358701
  17. The content of caspase 9 gene transcripts in peripheral blood leukocytes and plasma levels of TNF-alpha were significantly higher in healthy subjects carrying the C allele compared to carriers of the GG genotype. PMID: 28091912
  18. Results show that mRNA and protein levels of HAX-1 in prostate cancer cell lines were significantly higher and inhibit cell apoptosis through caspase-9 inactivation. PMID: 26323553
  19. Renal CASP9 expression is increased in diabetes and further increases as diabetic nephropathy progresses. PMID: 27141571
  20. Inhibition of Caspase-9 restricted, while Apaf-1 promoted, Chlamydia pneumoniae infection in HEp-2, HeLa, and mouse epithelial fibroblast (MEF) cells. PMID: 26290316
  21. Levels of caspase-9, caspase-10, MAVS, and pIRF7 in mononuclear cells and the disease activity index (SLEDAI) in systemic lupus erythematosus patients were determined. PMID: 25370148
  22. Expression of mutant caspase-9 correlated with a downregulation of BAFFR (B-cell-activating factor belonging to the TNF family (BAFF) receptor) in B cells and ICOS (inducible T-cell costimulator) in T cells. PMID: 25569260
  23. Caspase-9 mediates Puma activation to determine the threshold for overcoming chemoresistance in cancer cells. PMID: 25356864
  24. Phosphorylation of caspase-9 may be a useful tool to assess the state of gastrointestinal cancer and the effects of anti-cancer therapy. PMID: 25031754
  25. DNA fragmentation, DNA damage, caspase-9 activation, and a significant increase in the sub-G1 and S cell cycle phases confirmed the occurrence of apoptosis in a time-dependent manner. PMID: 24377517
  26. Data indicate a significant association of two single nucleotide polymorphisms (SNPs) in caspase-9 (CASP9) and two haplotypes of the four SNP combinations with acute myeloid leukemia (AML) susceptibility. PMID: 24879622
  27. Silica and double-stranded RNA (dsRNA) synergistically induce caspase-9-dependent apoptosis, but not inflammasome activation, of bronchial epithelial cells. PMID: 24661197
  28. KAT5 RNAi may result in cleaved casp9 upregulation through p38MAPK activation in gallbladder carcinoma cells. PMID: 24427328
  29. Overexpression of iASPP and the low expression of caspase-9 in esophageal cancer are closely correlated with tumor invasion and metastasis. PMID: 24405603
  30. The Atg7.caspase-9 complex performs a dual function of linking caspase-9 to the autophagic process while keeping its apoptotic activity in check. PMID: 24362031
  31. The inhibitory effect of Ab42 on the apoptotic pathway is associated with its interaction with procaspase-9 and subsequent inhibition of Apaf-1 apoptosome assembly. PMID: 24424093
  32. The rs4645981 T allele and the rs4645981 T allele carrier might increase the risk of cancer, while the rs1052576 A allele, rs1052576 A carrier, rs2308941 T allele, and rs2308941 T carrier might be protective. PMID: 23479167
  33. Interactions of caspase-9 with the BIR3 (baculovirus inhibitory repeat 3) exosite are essential for high-affinity binding. PMID: 23203690
  34. In oligozoospermia, spermatogonia exhibited a significant increase in active caspase-9. PMID: 23359247
  35. Changes in caspase-9 expression from colon mucosa to adenoma to cancer suggest its involvement in the carcinogenesis of colon cancer. PMID: 24592539
  36. dCas9 effectors can exert positive or negative regulation on the expression of developmentally relevant genes, which can influence cell differentiation status when impacting a key node in the regulatory network that governs the cell state. PMID: 24346702
  37. BIRC5-31CC and CASP9+83CT/TT genotypes were associated with an increased risk for renal cell carcinoma development in the female group of a southern European study population. PMID: 23645041
  38. OSU-03012 induces apoptosis in human esophageal carcinoma cells through a p53/Bax/cytochrome c/caspase-9-dependent pathway. PMID: 23652278
  39. EGCG, both alone and in combination with cisplatin, promoted the expression of the pro-apoptotic splice isoform of caspase-9. PMID: 23615977
  40. Results demonstrated that 50 microg/mL beta-glucan significantly repressed the expression of the ERCC5 gene, with no change in CASP9 expression, and induction of the CYP1A1 gene. PMID: 23424205
  41. CASP-9 polymorphisms are associated with susceptibility to low back pain during military training in Chinese soldiers. PMID: 23725396
  42. Results suggest that polymorphisms of CASP9 and CASP10 genes may not contribute to CRC risk in the Chinese population. PMID: 23303631
  43. Proteolytic processing of the caspase-9 zymogen is required for apoptosome-mediated activation of caspase-9. PMID: 23572523
  44. Polymorphism in Caspase 9 (-1263 A>G) was observed to be associated with susceptibility to papillary thyroid carcinoma (PTC). PMID: 22120515
  45. Induction of caspase-9b expression is due to the activation of hnRNP L via phosphorylation, leading to competition and inhibition of hnRNP U association with exon 3 of Casp9 mRNA. PMID: 23396972
  46. Results clearly indicated that olive oil phenolic extract and gallic acid were able to inhibit the caspase-9-dependent apoptosis pathway in HeLa cells. PMID: 22086301
  47. The overexpression of c-Jun, p73, and Casp-9 in thymic epithelial tumors is closely related to the pathogenesis and biological behavior of the neoplasms. PMID: 22974165
  48. Data suggest that CD95L-triggered endogenous ceramide increase in Jurkat leukemia T cells is likely involved in the pro-apoptotic mitochondrial pathway leading to caspase-9 activation. PMID: 22306364
  49. Caspase-9 is the most important regulator in DLD-1, HCT-116, and HeLa cells. PMID: 23038270
  50. CASP9 promoter polymorphisms rs4645978 and rs4645981 are associated with breast cancer susceptibility, suggesting that CASP9 transcriptional regulation is an important factor during breast cancer development. PMID: 22981751

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Database Links

HGNC: 1511

OMIM: 602234

KEGG: hsa:842

STRING: 9606.ENSP00000330237

UniGene: Hs.329502

Protein Families
Peptidase C14A family
Tissue Specificity
Ubiquitous, with highest expression in the heart, moderate expression in liver, skeletal muscle, and pancreas. Low levels in all other tissues. Within the heart, specifically expressed in myocytes.

Q&A

What is Caspase-9 (CASP9) and what is its biological significance?

Caspase-9 is a critical initiator caspase involved in the intrinsic pathway of apoptosis. It functions as part of the apoptotic activation cascade responsible for executing programmed cell death. Upon binding to Apaf-1 (Apoptotic protease activating factor 1), caspase-9 becomes activated and subsequently cleaves and activates the effector caspases, primarily caspase-3 and caspase-7 . This proteolytic activity is essential for the execution phase of apoptosis.

Caspase-9 is also known by several other names including APAF-3, ICE-LAP6, and MCH6 . The protein is initially synthesized as an inactive procaspase (approximately 47 kDa) that requires proteolytic processing to generate the active enzyme, which functions as a heterotetramer . Importantly, caspase-9 exhibits ABL1/c-Abl-dependent promotion of DNA damage-induced apoptosis and cleaves poly(ADP-ribose) polymerase (PARP) .

What is an HRP-conjugated antibody and what advantages does it offer for research?

An HRP-conjugated antibody refers to an antibody that has been chemically linked to horseradish peroxidase enzyme. This conjugation enables direct detection of the target protein without the need for secondary antibody incubation steps. When the antibody binds to its target (in this case, caspase-9), the attached HRP enzyme can catalyze a colorimetric, chemiluminescent, or fluorescent reaction when provided with an appropriate substrate.

The primary advantages of HRP-conjugated antibodies include:

These advantages make HRP-conjugated CASP9 antibodies particularly valuable for time-sensitive experiments and high-throughput research applications .

What are the validated applications for CASP9 Antibody, HRP conjugated?

Based on the available data, CASP9 Antibody, HRP conjugated has been validated for several research applications:

ApplicationValidation StatusNotes
Western Blot (WB)ValidatedPrimary application with high sensitivity
ELISAValidatedUseful for quantitative detection
Immunohistochemistry - Paraffin (IHC-P)ValidatedEffective in cancer tissue samples
Immunohistochemistry - Frozen (IHC-F)ValidatedReported for certain antibodies
Flow CytometryValidatedDemonstrated in Hela cells

The antibody has shown reliable performance across these applications, with western blotting being the most extensively validated technique. For immunohistochemistry applications, the antibody has been successfully used to detect CASP9 in various cancer tissues including breast, ovarian, gallbladder adenocarcinoma, and lung cancer samples . Flow cytometry validation has confirmed the ability to detect intracellular CASP9 after proper fixation and permeabilization procedures .

What is the optimal sample preparation protocol for Western blotting with CASP9 Antibody, HRP conjugated?

For optimal Western blot results with CASP9 Antibody, HRP conjugated, the following sample preparation protocol is recommended based on validated methods:

  • Cell/Tissue Lysis:

    • Harvest cells or tissue in appropriate lysis buffer containing protease inhibitors

    • For adherent cells, wash with PBS and add lysis buffer directly to the plate

    • For tissues, homogenize in lysis buffer using mechanical disruption

  • Protein Quantification:

    • Determine protein concentration using Bradford, BCA, or similar assays

    • Standardize all samples to equal concentration (typically 1-2 μg/μl)

  • Sample Preparation:

    • Mix protein samples with reducing loading buffer

    • Heat samples at 95°C for 5 minutes to denature proteins

    • A protein load of 20-30 μg per lane is recommended (30 μg was used in validated protocols)

  • Electrophoresis Conditions:

    • Use 5-20% SDS-PAGE gel (gradient gels provide better resolution)

    • Run at 70V for stacking gel and 90V for resolving gel, for approximately 2-3 hours

  • Transfer Conditions:

    • Transfer proteins to nitrocellulose membrane at 150 mA for 50-90 minutes

    • Verify transfer efficiency with reversible protein staining

  • Blocking:

    • Block membrane with 5% non-fat milk in TBS for 1.5 hours at room temperature

    • Alternative blocking agents can be used, but milk has been validated

This protocol has been validated for detecting caspase-9, which appears as a band at approximately 46 kDa (pro-form) . When studying apoptosis, additional bands corresponding to cleaved products may also be visible, depending on the antibody's epitope location and the activation state of the cells.

What are the recommended dilutions and incubation conditions for different applications?

Based on the validated protocols, the following dilutions and incubation conditions are recommended for CASP9 Antibody, HRP conjugated:

ApplicationRecommended DilutionIncubation ConditionsNotes
Western Blot1:1000-1:2000 (0.5-1 μg/ml)Overnight at 4°CFor stronger signals, longer incubation at lower temperature is preferred
IHC-P1:200-1:500 (2 μg/ml)Overnight at 4°CHeat-mediated antigen retrieval in EDTA buffer (pH 8.0) is critical
Flow Cytometry1:100-1:1000 (1 μg per 1×10^6 cells)30 min at 20°CCells must be fixed and permeabilized properly
ELISA1:500-1:20001-2 hours at room temperatureOptimization may be required for specific assay formats

These recommendations serve as starting points, and optimization may be necessary depending on your specific experimental conditions, sample type, and detection method. For western blotting, the signal development is typically performed using enhanced chemiluminescent (ECL) detection kits, which have been validated with CASP9 Antibody, HRP conjugated .

How should appropriate controls be selected for experiments using CASP9 Antibody, HRP conjugated?

Proper experimental controls are essential when working with CASP9 Antibody, HRP conjugated to ensure reliable and interpretable results:

  • Positive Controls:

    • Jurkat cell lysates have been validated as positive controls for CASP9 detection in western blot

    • For flow cytometry, Hela cells have been confirmed to express detectable levels of CASP9

    • For tissue studies, breast cancer, ovarian cancer, gallbladder adenocarcinoma, and lung cancer tissues have shown CASP9 expression

  • Negative Controls:

    • Omit primary antibody incubation while maintaining all other steps

    • For flow cytometry, include samples treated only with secondary antibody (if using indirect detection) or isotype control antibodies (rabbit IgG has been validated)

    • Unlabelled samples without incubation with primary and secondary antibodies serve as blank controls for flow cytometry

  • Apoptosis Induction Controls:

    • When studying CASP9 activation, include samples treated with known apoptosis inducers (e.g., staurosporine, etoposide) as positive controls

    • Include non-treated samples as baseline controls

  • Specificity Controls:

    • If possible, include samples where CASP9 has been knocked down (siRNA) or knocked out (CRISPR)

    • Peptide competition assays can verify antibody specificity

Following these control guidelines will help validate experimental findings and troubleshoot any issues that may arise during the use of CASP9 Antibody, HRP conjugated.

How can CASP9 Antibody, HRP conjugated be used to study the apoptosis pathway?

CASP9 Antibody, HRP conjugated offers several methodological approaches for investigating the intrinsic apoptosis pathway:

  • Monitoring CASP9 Activation:

    • Western blot analysis can detect both procaspase-9 (46 kDa) and its cleaved products

    • The ratio between full-length and cleaved forms indicates the degree of activation

    • Time-course experiments following apoptotic stimuli can reveal activation kinetics

  • CASP9 Interaction Studies:

    • Co-immunoprecipitation followed by western blotting can identify CASP9 binding partners

    • This approach can reveal interactions with Apaf-1, cytochrome c, and inhibitory proteins

  • Subcellular Localization:

    • Immunocytochemistry can track CASP9 translocation from cytosol to mitochondria upon activation

    • Subcellular fractionation followed by western blotting provides quantitative assessment

  • Pathway Regulation Analysis:

    • The antibody can be used to assess how CASP9 activation is regulated by:

      • BclXL, cIAP1, cIAP2, XIAP, and Livin (known inhibitors)

      • Apaf1/cytochrome c complex formation

      • Post-translational modifications

  • Functional Consequences Assessment:

    • Downstream effector activation (caspase-3, caspase-7) can be monitored in relation to CASP9 activation

    • PARP cleavage, a CASP9 substrate, can serve as a functional readout

This methodological framework enables comprehensive investigation of CASP9's role in apoptosis, from initiating events to downstream effects, and can be adapted to various experimental models and research questions.

What factors should be considered when using CASP9 Antibody, HRP conjugated across different species?

When utilizing CASP9 Antibody, HRP conjugated in cross-species studies, several important considerations must be addressed:

  • Confirmed Reactivity:

    • Direct reactivity has been confirmed for human, mouse, and rat samples with certain antibodies

    • Predicted reactivity (based on sequence homology) may extend to cow, sheep, pig, and rabbit

  • Epitope Conservation:

    • Check epitope sequence conservation across species of interest

    • For example, one antibody targets the region within residues 231-330/416 of human CASP9

    • Higher sequence homology correlates with better cross-reactivity

  • Optimization Requirements:

    • Even with confirmed reactivity, protocol adjustments may be necessary:

      • Dilution optimization for each species

      • Modified incubation times or temperatures

      • Adjusted blocking conditions

      • Species-appropriate positive controls

  • Detection Sensitivity Variations:

    • Signal intensity often varies across species due to differences in:

      • Epitope accessibility

      • Protein expression levels

      • Post-translational modifications

      • Sample preparation compatibility

  • Isoform Considerations:

    • Different species may express various CASP9 isoforms

    • Human CASP9 has been reported to have two isoforms, with isoform 2 functioning as a dominant-negative inhibitor

    • Verify which isoforms the antibody detects in each species

Researchers should conduct preliminary validation studies when applying CASP9 Antibody, HRP conjugated to a new species, even if predicted reactivity is indicated. This ensures reliable and interpretable results across comparative studies.

How can potential non-specific binding be addressed when using CASP9 Antibody, HRP conjugated?

Non-specific binding can compromise experimental results when using CASP9 Antibody, HRP conjugated. The following methodological approaches can mitigate this issue:

  • Optimization of Blocking Conditions:

    • Use fresh 5% non-fat milk in TBS for blocking (as validated in protocols)

    • Alternative blocking agents (BSA, casein, commercial blockers) may be tested if background persists

    • Extend blocking time from the standard 1.5 hours if necessary

  • Antibody Dilution Titration:

    • Conduct a dilution series to identify the optimal concentration that maximizes specific signal while minimizing background

    • Start with the recommended dilutions (e.g., 0.5 μg/mL for western blot) and adjust as needed

  • Washing Protocol Enhancement:

    • Increase the number and duration of washes with TBS-0.1% Tween (beyond the standard three times for 5 minutes each)

    • Use fresh washing buffers

    • Ensure thorough washing of membrane edges and corners

  • Sample Preparation Modifications:

    • Use fresh protease inhibitors in lysis buffers

    • Remove particulates by additional centrifugation

    • Reduce protein loading if bands appear smeared

  • Validation Through Complementary Approaches:

    • Peptide competition assays to confirm signal specificity

    • Knockdown/knockout controls

    • Comparison with alternative CASP9 antibodies targeting different epitopes

  • HRP Activity Considerations:

    • Store HRP-conjugated antibodies according to manufacturer recommendations to prevent activity loss

    • Avoid repeated freeze-thaw cycles by preparing small aliquots

    • Use fresh substrate for detection

By systematically implementing these approaches, researchers can significantly reduce non-specific binding and improve the reliability of results obtained with CASP9 Antibody, HRP conjugated.

What are the most common issues encountered when using CASP9 Antibody, HRP conjugated and how can they be resolved?

Researchers commonly encounter several technical challenges when working with CASP9 Antibody, HRP conjugated. Here are methodological solutions to address these issues:

  • Weak or Absent Signal:

    • Cause: Insufficient antigen, antibody degradation, or suboptimal detection conditions

    • Solutions:

      • Increase protein loading (30 μg per lane recommended)

      • Reduce antibody dilution (try 0.5-1 μg/ml)

      • Extend primary antibody incubation time (overnight at 4°C)

      • Use heat-mediated antigen retrieval in EDTA buffer (pH 8.0) for IHC applications

      • Verify HRP activity with a direct substrate test

  • High Background:

    • Cause: Insufficient blocking, washing, or non-specific binding

    • Solutions:

      • Extend blocking time beyond 1.5 hours

      • Increase washing frequency and duration (beyond three 5-minute washes)

      • Prepare fresh blocking and washing buffers

      • Increase antibody dilution if signal is strong but background is high

  • Multiple Bands in Western Blot:

    • Cause: Detection of isoforms, degradation products, or non-specific binding

    • Solutions:

      • Verify band sizes against expected patterns (procaspase-9 at 46 kDa, cleaved products at lower molecular weights)

      • Add additional protease inhibitors to prevent sample degradation

      • Confirm specificity with knockout/knockdown controls

  • Inconsistent Flow Cytometry Results:

    • Cause: Variable fixation, permeabilization, or antibody access

    • Solutions:

      • Standardize fixation with 4% paraformaldehyde

      • Ensure thorough permeabilization

      • Block with 10% normal goat serum

      • Include appropriate isotype controls (rabbit IgG) and unlabelled controls

  • Variable IHC Staining Intensity:

    • Cause: Inconsistent fixation, processing, or antigen retrieval

    • Solutions:

      • Standardize tissue processing and fixation protocols

      • Optimize antigen retrieval (EDTA buffer, pH 8.0 has been validated)

      • Ensure consistent blocking with 10% goat serum

      • Standardize DAB development times

Implementing these methodological solutions based on validated protocols can significantly improve experimental outcomes when working with CASP9 Antibody, HRP conjugated.

How should CASP9 Antibody, HRP conjugated be stored and handled to maintain optimal activity?

Proper storage and handling of CASP9 Antibody, HRP conjugated is crucial for maintaining its activity and ensuring experimental reproducibility:

  • Storage Temperature:

    • Store lyophilized antibody at -20°C for up to one year from the receipt date

    • After reconstitution, store at 4°C for up to one month for frequent use

    • For long-term storage after reconstitution, store at -20°C for up to six months

  • Reconstitution Protocol:

    • Reconstitute lyophilized antibody using sterile water or buffer

    • Allow the antibody to fully dissolve before use (avoid vigorous shaking)

    • Centrifuge briefly to collect all liquid at the bottom of the vial

  • Aliquoting Recommendations:

    • Prepare small single-use aliquots to avoid repeated freeze-thaw cycles

    • Use sterile microcentrifuge tubes for aliquoting

    • Label aliquots with antibody name, concentration, and date

  • Freeze-Thaw Considerations:

    • Minimize freeze-thaw cycles as they can significantly reduce HRP activity and antibody binding

    • If possible, thaw aliquots only once before use

    • Never refreeze a thawed aliquot

  • Working Solution Preparation:

    • Prepare diluted working solutions fresh on the day of experiment

    • Use high-quality diluents containing stabilizing proteins (e.g., 1% BSA)

    • Keep diluted antibody on ice or at 4°C during experimental procedures

  • Storage Buffer Components:

    • The antibody is typically stored in a buffer containing:

      • 0.01M TBS (pH 7.4)

      • 1% BSA as a stabilizing protein

      • 0.03% Proclin300 as a preservative

      • 50% Glycerol to prevent freezing damage

Following these storage and handling guidelines will help maintain the activity and specificity of CASP9 Antibody, HRP conjugated throughout its shelf life, ensuring consistent and reliable experimental results.

What methods can be used to validate the specificity of CASP9 Antibody, HRP conjugated?

Validating antibody specificity is critical for ensuring reliable experimental results. The following methodological approaches can be used to confirm the specificity of CASP9 Antibody, HRP conjugated:

  • Genetic Manipulation Controls:

    • CRISPR/Cas9 Knockout: Generate CASP9 knockout cells to confirm absence of signal

    • siRNA Knockdown: Perform partial knockdown to demonstrate signal reduction proportional to protein reduction

    • Overexpression: Transfect cells with CASP9 expression vectors to show increased signal intensity

  • Peptide Competition Assay:

    • Pre-incubate the antibody with excess synthetic peptide corresponding to the immunogen

    • Apply this mixture to samples in parallel with untreated antibody

    • Specific binding should be competitively inhibited by the peptide

  • Multiple Detection Methods:

    • Compare results across different applications (WB, IHC, flow cytometry)

    • Consistent detection pattern across methods supports specificity

    • Validated applications include WB, ELISA, IHC-P, IHC-F, and flow cytometry

  • Molecular Weight Verification:

    • Confirm band sizes match expected molecular weights:

      • Procaspase-9: approximately 46 kDa

      • Cleaved fragments: various sizes depending on processing site

    • Use molecular weight markers and apoptosis-induced samples for comparison

  • Isoform Detection Analysis:

    • Test antibody against known CASP9 isoforms (e.g., isoform 2, which functions as a dominant-negative inhibitor)

    • Confirm antibody detects expected isoforms based on epitope location

  • Positive Control Tissues/Cells:

    • Use validated positive controls:

      • Jurkat cells for western blot

      • Hela cells for flow cytometry

      • Cancer tissues (breast, ovarian, gallbladder, lung) for IHC

  • Cross-Reactivity Assessment:

    • Test antibody against related caspase family members

    • Ensure signal is specific to CASP9 and not detecting closely related proteins

Implementing multiple validation approaches provides stronger evidence for antibody specificity than any single method alone. This comprehensive validation strategy ensures that experimental results accurately reflect CASP9 biology rather than artifacts from non-specific binding.

How can CASP9 Antibody, HRP conjugated be used in multiplex assays with other apoptosis markers?

CASP9 Antibody, HRP conjugated can be integrated into multiplex assays to provide comprehensive apoptosis pathway analysis. Here are methodological approaches for effective multiplexing:

  • Sequential Immunoblotting Strategies:

    • Strip and Reprobe Method:

      • After detecting CASP9 with HRP-conjugated antibody, strip the membrane

      • Reprobe with antibodies against other apoptosis markers (e.g., cleaved PARP, caspase-3)

      • Ensure complete stripping to prevent residual signal interference

    • Same-Species Antibody Multiplexing:

      • Use size-separated markers that produce bands at distinct molecular weights

      • CASP9 (46 kDa) can be multiplexed with Bcl-2 (26 kDa), Bax (21 kDa), or cleaved PARP (89 kDa)

      • This approach leverages the HRP conjugation to eliminate secondary antibody cross-reactivity

  • Multiplex Immunohistochemistry Techniques:

    • Sequential Chromogenic IHC:

      • Perform initial staining with CASP9 Antibody, HRP conjugated using DAB substrate

      • Denature or block the first antibody

      • Apply second primary antibody with a different chromogen (e.g., AEC, Fast Red)

      • This creates visually distinct staining patterns for each marker

    • Tyramide Signal Amplification (TSA):

      • Use HRP-conjugated CASP9 antibody with fluorescent tyramide substrate

      • Heat-inactivate HRP after first detection

      • Repeat with additional markers using different fluorophores

      • This allows same-species antibodies to be used sequentially

  • Flow Cytometry Multiplexing:

    • Multi-Parameter Approach:

      • Use CASP9 Antibody, HRP conjugated with fluorescent substrates compatible with flow cytometry

      • Combine with antibodies against surface markers and other intracellular apoptosis indicators

      • Include viability dyes for identifying early vs. late apoptotic cells

      • Validated in Hela cells with appropriate controls

  • Complementary Marker Selection:

    • Initiator-Effector Cascades:

      • Pair CASP9 (initiator) with downstream effectors (caspase-3, caspase-7)

      • Monitor both activation steps simultaneously

    • Mitochondrial Pathway Components:

      • Combine with cytochrome c detection to monitor release from mitochondria

      • Include Apaf-1 staining to assess apoptosome formation

    • Regulatory Protein Interactions:

      • Include inhibitors (XIAP, cIAP1/2, Bcl-XL) to examine regulatory mechanisms

      • Monitor BID/tBID to assess cross-talk between extrinsic and intrinsic pathways

These multiplexing strategies enable comprehensive analysis of apoptosis mechanisms, allowing researchers to monitor multiple steps in the pathway simultaneously while maintaining specificity and quantitative accuracy.

What are the considerations for using CASP9 Antibody, HRP conjugated in different cancer research models?

CASP9 Antibody, HRP conjugated has been validated in multiple cancer models, but requires specific methodological considerations for optimal results in different research contexts:

  • Tissue-Specific Expression Patterns:

    • Validated Cancer Tissues:

      • Breast cancer: Shows CASP9 expression with validated protocols

      • Ovarian cancer: Demonstrates reliable CASP9 staining

      • Gallbladder adenocarcinoma: Validated for CASP9 detection

      • Lung cancer: Shows consistent CASP9 expression patterns

    • Expression Level Variations:

      • Baseline expression levels vary significantly between cancer types

      • Adjust antibody dilutions accordingly (starting with 2 μg/ml for IHC-P)

      • Consider longer development times for low-expressing samples

  • Cell Line Model Considerations:

    • Validated Cell Lines:

      • Jurkat cells: Reliable for western blot applications

      • Hela cells: Validated for flow cytometry

    • Growth Conditions Impact:

      • Confluence level affects baseline CASP9 expression

      • Serum starvation may alter CASP9 activation state

      • Document culture conditions precisely for reproducibility

  • Treatment Response Monitoring:

    • Chemotherapy Effects:

      • Many chemotherapeutics activate the intrinsic apoptosis pathway

      • Time-course experiments reveal activation kinetics

      • Compare procaspase-9 to cleaved fragments ratio to quantify activation

    • Targeted Therapy Responses:

      • Measure CASP9 activation as a biomarker of response

      • Compare with clinical outcomes for potential translational applications

      • Include treatment-resistant models as controls

  • Technical Adaptations:

    • Fixation Optimization:

      • Different tumor tissues require adjusted fixation protocols

      • Formalin-fixed paraffin-embedded (FFPE) samples require heat-mediated antigen retrieval in EDTA buffer (pH 8.0)

      • Fresh frozen sections may require alternative fixation and permeabilization

    • Background Reduction:

      • Tumor tissues often exhibit higher background

      • Extend blocking time with 10% goat serum

      • Additional washing steps may be necessary

  • Translational Research Applications:

    • Tissue Microarray Analysis:

      • Standardize staining protocols across multiple tumor samples

      • Develop quantitative scoring systems

      • Correlate with clinicopathological features and outcomes

    • Prognostic Marker Development:

      • Assess CASP9 expression/activation correlation with patient outcomes

      • Combine with other apoptosis markers for improved prognostic value

      • Consider isoform-specific detection (dominant-negative isoform 2 may have distinct implications)

These considerations enable researchers to effectively apply CASP9 Antibody, HRP conjugated across diverse cancer research models while maintaining experimental rigor and data reliability.

How can quantitative analysis be performed on data generated using CASP9 Antibody, HRP conjugated?

Quantitative analysis of CASP9 detection requires appropriate methodological approaches to ensure accurate and reproducible measurements:

  • Western Blot Quantification:

    • Densitometric Analysis:

      • Capture images using a digital imaging system with linear detection range

      • Measure band intensity using software (ImageJ, Image Lab, etc.)

      • Normalize CASP9 signal to loading controls (β-actin, GAPDH, tubulin)

      • Calculate the ratio of procaspase-9 (46 kDa) to cleaved fragments to assess activation

    • Technical Considerations:

      • Avoid signal saturation which prevents accurate quantification

      • Include a standard curve using recombinant protein if absolute quantification is needed

      • Run biological replicates (n≥3) for statistical analysis

  • Immunohistochemistry Quantification:

    • Scoring Systems:

      • Develop semi-quantitative scoring based on staining intensity and percentage of positive cells

      • Use digital pathology software for automated quantification

      • Implement machine learning algorithms for pattern recognition in complex tissues

    • Controls for Normalization:

      • Include standard positive controls in each staining batch

      • Use tissue microarrays with known CASP9 expression levels

      • Account for tissue-specific background levels

  • Flow Cytometry Quantification:

    • Population Analysis:

      • Gate cell populations based on size, granularity, and viability

      • Measure mean/median fluorescence intensity for CASP9 signal

      • Compare to isotype controls and unlabelled samples

      • Calculate percentage of CASP9-positive cells

    • Calibration Approaches:

      • Use calibration beads with known antibody binding capacity

      • Create standard curves with cells expressing known CASP9 levels

      • Apply compensation when multiplexing with other fluorescent markers

  • ELISA-Based Quantification:

    • Standard Curve Generation:

      • Prepare serial dilutions of recombinant CASP9 protein

      • Plot concentration vs. signal intensity

      • Ensure the curve covers the expected sample range

    • Sample Preparation Standardization:

      • Use consistent lysis buffers and protein extraction methods

      • Standardize protein concentration in all samples

      • Run samples in triplicate to assess technical variation

  • Statistical Analysis Framework:

    • Appropriate Statistical Tests:

      • Apply Student's t-test for comparing two conditions

      • Use ANOVA for multiple group comparisons

      • Implement non-parametric tests when normal distribution cannot be assumed

    • Data Visualization:

      • Present data with appropriate error bars (SD, SEM)

      • Include individual data points for transparency

      • Create graphs that clearly show both statistical and biological significance

These quantitative approaches allow researchers to extract meaningful numerical data from experiments using CASP9 Antibody, HRP conjugated, enabling robust statistical analysis and accurate interpretation of biological phenomena related to apoptotic pathways.

What are the key considerations for selecting the appropriate CASP9 Antibody, HRP conjugated for specific research applications?

When selecting a CASP9 Antibody, HRP conjugated for research, several critical factors should be considered to ensure optimal experimental outcomes:

  • Epitope Specificity and Location:

    • Consider whether the antibody recognizes specific domains or regions of CASP9

    • Determine if the antibody detects both procaspase-9 and cleaved fragments

    • For mechanistic studies, select antibodies targeting functional domains (CARD domain vs. catalytic domain)

    • Some antibodies target regions within amino acids 231-330/416 of human CASP9

  • Validated Applications:

    • Ensure the antibody has been validated for your specific application

    • Different applications may require different antibody characteristics

    • Cross-check validation data across multiple applications if using in different methodologies

  • Clonality Considerations:

    • Monoclonal antibodies offer higher specificity and batch-to-batch consistency

    • Polyclonal antibodies may provide stronger signals through multiple epitope binding

    • Consider whether epitope accessibility in your experimental system favors one type over another

  • Species Reactivity Requirements:

    • Confirm reactivity with your model organism (human, mouse, rat)

    • For cross-species studies, select antibodies with validated multi-species reactivity

    • Consider sequence homology in the target epitope region across species

  • Technical Specifications:

    • Antibody concentration (typically 1 μg/μl)

    • Storage buffer composition and compatibility with your experimental system

    • Storage requirements and shelf-life considerations

  • Quality Control Documentation:

    • Review validation images across applications

    • Assess consistency of results in different experimental systems

    • Evaluate specificity controls and background levels in validation data

Thorough evaluation of these factors will guide researchers in selecting the most appropriate CASP9 Antibody, HRP conjugated for their specific research questions, experimental systems, and methodological approaches.

What emerging research areas could benefit from using CASP9 Antibody, HRP conjugated?

Several cutting-edge research areas could significantly benefit from the application of CASP9 Antibody, HRP conjugated:

  • Cancer Therapy Resistance Mechanisms:

    • Investigate how alterations in the intrinsic apoptosis pathway contribute to therapy resistance

    • Assess CASP9 activation as a biomarker for treatment response

    • Study combination therapies that restore apoptotic sensitivity through CASP9 activation

    • Examine isoform switching (including dominant-negative isoform 2) as a resistance mechanism

  • Neurodegenerative Disease Research:

    • Explore the role of aberrant CASP9 activation in neuronal cell death

    • Investigate CASP9 as a potential therapeutic target in neurodegenerative conditions

    • Study CASP9-mediated cleavage of disease-specific proteins

    • Assess the impact of neuroinflammation on CASP9 activation patterns

  • Immunotherapy Research:

    • Study CASP9 activation in immune cells following checkpoint inhibitor therapy

    • Investigate how cancer cells modulate CASP9 pathways to escape immune surveillance

    • Assess CASP9 activation as a marker of immune cell exhaustion or activation

    • Develop combinatorial approaches targeting apoptotic pathways alongside immunotherapy

  • Single-Cell Analysis Techniques:

    • Integrate CASP9 Antibody, HRP conjugated into single-cell protein analysis workflows

    • Correlate CASP9 activation with transcriptomic profiles at single-cell resolution

    • Develop spatial transcriptomics approaches incorporating CASP9 activation status

    • Map heterogeneity of apoptotic responses within complex tissues

  • Drug Discovery and Development:

    • Use CASP9 activation as a high-throughput screening readout for pro-apoptotic compounds

    • Develop assays for identifying CASP9 isoform-specific modulators

    • Screen for compounds that modulate CASP9 interactions with regulatory proteins

    • Assess on-target vs. off-target effects of apoptosis-inducing therapeutic candidates

  • Systems Biology and Computational Modeling:

    • Generate quantitative data on CASP9 activation kinetics for computational model development

    • Integrate CASP9 data into multi-parameter models of cell death decision-making

    • Develop predictive models of treatment response based on CASP9 pathway status

    • Create mathematical frameworks linking CASP9 activation to cellular outcomes

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