CDA5 Antibody

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Description

Clarification of Terminology

The search results reference two distinct types of "CDA" antibodies:

TypeTargetFunction
Cytidine DeaminaseCDA enzyme (Cytidine Deaminase)Catalyzes deamination of cytidine to uridine; implicated in nucleoside metabolism and chemotherapy resistance .
Cell-DependentCell surface antigensMediates antibody-dependent cellular cytotoxicity (ADCC) via Fc receptor binding .

No "CDA5" variant is documented. Potential explanations include:

  • Typographical Error: Possible confusion with "CD5" antibodies (e.g., anti-CD5 immunoconjugates used in rheumatoid arthritis therapy ).

  • Unpublished Designation: A novel antibody not yet indexed in public databases.

Mechanism of Action

  • ADCC Pathway: CDA antibodies bind to target cell antigens, enabling effector cells (e.g., NK cells) to lyse infected cells via Fc receptor engagement .

  • Inhibition Studies:

    • Fc Receptor Blocking: Pretreatment with anti-human PBL serum (IgG) inhibits ADCC by blocking Fc receptors .

    • Protein A Affinity: CDA antibodies (IgG) bind protein A, distinguishing them from complement-dependent cytotoxicity (CDC) antibodies .

Cytidine Deaminase Antibodies

  • Therapeutic Relevance: Mutations in CDA reduce sensitivity to cytosine arabinoside (ara-C), a leukemia treatment . Antibodies may aid in stratifying resistant patients.

  • Tissue-Specific Expression:

    TissueNormal SignalCancer SignalSource
    LiverCytoplasmicReduced
    ColonSporadic stromalModerate cancer

Cell-Dependent Antibodies in Immunotherapy

  • ADCC Modulation: CDA antibodies enhance immune responses in conditions like rheumatoid arthritis (e.g., anti-CD5 immunoconjugates ).

  • Structural Insights: Cryo-EM studies of broadly neutralizing antibodies (e.g., O5C2 against SARS-CoV-2) reveal epitope overlap with receptor-binding domains, informing design strategies .

Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 week lead time (made-to-order)
Synonyms
CDA5 antibody; DESG antibody; At4g29640 antibody; T16L4.150Cytidine deaminase 5 antibody; EC 3.5.4.5 antibody
Target Names
CDA5
Uniprot No.

Target Background

Function
This antibody targets an enzyme that scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for the synthesis of uridine monophosphate (UMP).
Database Links
Protein Families
Cytidine and deoxycytidylate deaminase family

Q&A

What are the common applications for CDA antibody in research?

CDA antibody is primarily used in several key laboratory techniques:

  • Western Blot (WB): Effective at dilutions ranging from 1:1000 to 1:4000

  • Flow Cytometry (Intracellular): Recommended at 0.40 μg per 10^6 cells in a 100 μl suspension

  • Immunohistochemistry (IHC-P): Suitable for paraffin-embedded tissue samples
    The antibody has been validated with multiple human cell lines including HeLa (cervical adenocarcinoma), HepG2 (hepatocellular carcinoma), and TF-1 (bone marrow erythroleukemia) . It's important to note that optimization of dilution may be required depending on your specific experimental system, as reactivity can be sample-dependent .

What is the expected molecular weight of CDA in Western blot applications?

When conducting Western blot analysis using CDA antibody:

  • Predicted molecular weight: 16 kDa

  • Observed molecular weight: 16 kDa
    This consistency between predicted and observed molecular weights provides confidence in antibody specificity. When performing Western blot using anti-CDA antibody, a recommended blocking/dilution buffer is 5% NFDM/TBST (non-fat dry milk in Tris-buffered saline with Tween) . The antibody has been validated across multiple human samples including cell lines and tissue lysates with consistent results .

How do anti-Ad5 antibodies affect vaccine response?

Anti-Ad5 antibodies can significantly impact adenovirus vector-based vaccine effectiveness:

  • Pre-existing anti-Ad5 antibodies may reduce vaccine efficacy by neutralizing the vector before it delivers its payload

  • After vaccination with Ad5-based vaccines (such as Ad5-nCoV), anti-Ad5 antibody levels increase significantly within 21 days post-vaccination (p < 0.01)

  • This increase in anti-Ad5 antibodies should be considered when planning booster doses with the same vaccine platform
    Research has shown that the neutralizing antibody response to Ad5-nCoV vaccine differs between individuals with and without prior COVID-19 exposure, which may be partially related to the interaction with anti-Ad5 antibodies .

What factors influence neutralizing antibody production following Ad5-nCoV vaccination?

Research has identified several factors that significantly affect neutralizing antibody production:

  • Prior COVID-19 infection status: Individuals with prior COVID-19 develop significantly higher neutralizing antibody levels (median 98% [97-98.1]) compared to those without prior infection (median 72% [54-90]) (p < 0.0001)

  • Age: Advanced age is associated with impaired antibody production

  • Medication use: Antidepressants and immunosuppressive treatments are associated with reduced antibody response

  • Reactogenicity: The type and severity of vaccine reactions correlate with antibody production levels
    Interestingly, the baseline neutralization percentage in individuals with prior COVID-19 (before vaccination) was higher than that achieved post-vaccination in individuals without prior infection (p < 0.001), suggesting that natural infection may provide stronger initial antibody responses than vaccination alone .

How should experimental design be modified when testing CDA antibody across different human tissue samples?

When designing experiments using CDA antibody across diverse human tissues:

  • Consider tissue-specific expression patterns:

    • CDA has been detected in human fetal spleen, fetal kidney, and multiple cell lines

    • Expression levels vary significantly between tissue types

  • Adjust antibody concentration based on tissue type:

    • Higher antibody concentrations may be needed for tissues with lower CDA expression

    • Titration experiments are recommended for each new tissue type

  • Include appropriate controls:

    • Positive controls: HeLa cells consistently show strong CDA expression

    • Negative controls: Consider including tissues known not to express CDA

  • Detection system optimization:

    • For Western blot applications, use of ECL technique has been validated

    • For low-expressing samples, consider more sensitive detection methods
      Each tissue may require specific preparation protocols, and optimization of antigen retrieval methods may be necessary for immunohistochemistry applications.

What are the implications of anti-Ad5 antibody development for multi-dose vaccination strategies?

The development of anti-Ad5 antibodies after initial vaccination creates several challenges for multi-dose regimens:

  • Increased anti-Ad5 antibody levels post-vaccination may neutralize subsequent doses of Ad5-vector vaccines, potentially reducing booster dose effectiveness

  • Based on neutralizing antibody data, researchers recommend consideration of a booster dose strategy, especially for individuals without previous COVID-19 infection

  • Alternative strategies may include:

    • Heterologous prime-boost approaches (using different vaccine platforms for initial and booster doses)

    • Increasing the antigen dose in booster vaccinations

    • Modifying the Ad5 vector to escape pre-existing immunity
      The research indicates that 7.4% (17/229) of individuals without prior COVID-19 failed to develop neutralizing antibodies after Ad5-nCoV vaccination, emphasizing the importance of considering booster strategies for this population .

How can CDR-modified antibodies be engineered as effective cancer vaccines?

Advanced antibody engineering for cancer vaccines involves several sophisticated approaches:

  • CDR region modifications:

    • Replacing CDR regions with unique restriction endonuclease sites to create insertion points for T cell epitopes

    • Carefully selecting restriction enzyme sites that are unique for each CDR and absent from the rest of the vector

  • Epitope insertion strategies:

    • Multiple epitopes can be inserted into different CDR regions

    • Both CD8 cytotoxic T lymphocyte (CTL) and CD4 helper epitopes can be incorporated

    • Epitope placement affects protein folding and secretion efficiency

  • Expression and secretion considerations:

    • When testing constructs via CHO-S cell transfection, intact antibodies can be detected in cell supernatants using ELISA and Western blotting

    • Some CDR modifications may affect proper folding, as evidenced by detection of free heavy chains when multiple epitopes are inserted

  • Efficacy comparison:

    • ImmunoBody™ constructs containing H-2Kb restricted TRP2 epitope in CDRH2 demonstrated significantly higher frequency responses compared to whole antigen DNA vaccines (p = 0.0034)
      This approach represents a sophisticated platform for designing targeted cancer vaccines with improved immunogenicity compared to conventional approaches.

What methodological considerations should be addressed when validating a new lot of CDA antibody?

Thorough validation of new CDA antibody lots should include:

  • Cross-lot comparison:

    • Western blot comparisons using the same samples across different lots

    • Flow cytometry signal intensity comparison with standardized cell lines

  • Specificity testing:

    • Confirmation of the 16 kDa band specificity using positive control samples (HeLa, HepG2 cells)

    • Testing across multiple known positive samples (human fetal spleen, kidney)

    • Peptide blocking experiments to confirm epitope specificity

  • Sensitivity assessment:

    • Serial dilution tests to determine detection limits

    • Comparison with reference standards if available

  • Application-specific validation:

    • For Western blot: test different blocking buffers (5% NFDM/TBST recommended)

    • For flow cytometry: optimize permeabilization protocols for intracellular staining

    • For IHC-P: optimize antigen retrieval methods

  • Documentation:

    • Record lot-specific optimal dilutions for each application

    • Document any variations in performance compared to previous lots Following these methodological steps ensures experimental reproducibility and reliable antibody performance across different research applications.

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