CDA8 Antibody

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Description

Definition and Identification of CDA8 Antibody

A. Cadherin-8 Antibody (CAD8-1)
A monoclonal mouse IgG1 antibody targeting cadherin-8, a cell adhesion molecule critical for tissue organization and neural development. This reagent is deposited under the clone name CAD8-1 and reacts with mouse and rat antigens . Key characteristics include:

PropertyDetail
AntigenCadherin-8
CloneCAD8-1 (Mouse IgG1)
ReactivityMouse, Rat; others not tested
ApplicationsImmunohistochemistry, Western blotting
DepositorTakeichi, M. / Suzuki, S.C. (RIKEN)

B. Potential Confusion with CD8 Antibodies
CDA8 might be conflated with CD8 antibodies, which target the CD8 co-receptor on cytotoxic T-cells. These antibodies (e.g., OKT8, SK1) modulate CD8+ T-cell activation and are used in immunological research .

Research Findings on Cadherin-8 Antibody (CAD8-1)

While direct studies on "CDA8 Antibody" are absent, extensive data exist for cadherin-8 antibodies:

Comparative Analysis with CD8 Antibodies

FeatureCadherin-8 Antibody (CAD8-1)CD8 Antibodies (e.g., OKT8)
TargetCadherin-8CD8 co-receptor on T-cells
Primary UseDevelopmental biologyImmunology, T-cell research
Cross-ReactivityMouse, RatHuman, Mouse
Key ApplicationsIHC, WBT-cell activation studies

Mechanistic Insights from CD8 Antibody Research

Though unrelated to cadherin-8, CD8 antibodies provide valuable insights into antibody-mediated immune modulation:

Activation of CD8+ T-Cells

Anti-CD8 antibodies like OKT8 can directly trigger effector functions (cytokine release, cytotoxicity) in human CD8+ T-cells without TCR engagement. This occurs via cross-linking CD8 molecules, mimicking natural co-receptor engagement with MHC-I complexes .

Impact on pMHCI Tetramer Staining

OKT8 enhances TCR/pMHCI on-rates, improving the detection of antigen-specific CD8+ T-cells in tetramer-based assays. This property highlights antibody engineering strategies to optimize immunological tools .

Critical Considerations and Gaps

  1. Nomenclature Ambiguity: The term "CDA8" lacks standardization. Clarification with original sources is essential to avoid misinterpretation.

  2. Limited Data on Cadherin-8 Antibodies: While CAD8-1 is well-characterized, functional studies (e.g., blocking assays, knockout models) remain sparse in public databases.

  3. Therapeutic Potential: Unlike CD8 antibodies (e.g., used in T-cell therapies), cadherin-8 antibodies have not been explored for clinical applications .

Product Specs

Buffer
Preservative: 0.03% Proclin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 week lead time (made-to-order)
Synonyms
CDA8 antibody; DESA antibody; At4g29570 antibody; T16L4.80Cytidine deaminase 8 antibody; EC 3.5.4.5 antibody
Target Names
CDA8
Uniprot No.

Target Background

Function
This enzyme functions by scavenging both exogenous and endogenous cytidine and 2'-deoxycytidine to facilitate UMP synthesis.
Database Links

KEGG: ath:AT4G29570

STRING: 3702.AT4G29570.1

UniGene: At.31907

Protein Families
Cytidine and deoxycytidylate deaminase family

Q&A

What is CD8 and why are CD8 antibodies important in immunological research?

CD8 is a glycoprotein that serves as a co-receptor on MHC class I-restricted T-cells. It plays a crucial role in enhancing antigen sensitivity of CD8+ T-cells by binding to a largely invariant region of MHCI at a site distinct from the TCR docking platform. CD8 antibodies are important research tools because they allow scientists to investigate the multiple enhancing effects of CD8 on early T-cell activation events, including: promotion and stabilization of TCR/pMHCI binding at the cell surface, recruitment of essential signaling molecules to the intracellular side of the TCR/CD3/ζ complex, and localization of TCR/pMHCI complexes within specialized membrane microdomains that function as privileged sites for TCR-mediated signaling cascade initiation .

How do I choose between different anti-CD8 antibody clones for my research?

Selecting the appropriate anti-CD8 antibody clone depends on your specific research application and experimental design. Different clones exhibit varying binding characteristics and functional effects. For example, studies have revealed considerable heterogeneity in the ability of anti-CD8 antibodies to trigger CD8+ T-cell effector function. Of seven anti-human CD8 antibodies tested in one study, only one (OKT8) induced effector function in all CD8+ T-cells examined, while six others did not activate CD8+ T-cells . Consider your experimental goals carefully - whether you need a clone that activates T-cells (like OKT8) or one that does not affect activation status. Review literature about specific clones and their applications before selection.

What are the common applications for CD8 antibodies in T-cell research?

CD8 antibodies are utilized in various T-cell research applications, including:

  • Flow cytometry for identification and sorting of CD8+ T-cell populations

  • Immunofluorescence and immunohistochemistry for tissue localization studies

  • Western blotting for protein expression analysis

  • Immunoprecipitation for protein-protein interaction studies

  • Functional assays to study T-cell activation and inhibition

  • pMHCI tetramer staining for visualization of antigen-specific CD8+ T-cells (some antibodies like OKT8 can enhance TCR/pMHCI on-rates and improve tetramer staining)

  • Examination of CD8's role in CD8+ T-cell activation through blocking or triggering experiments

What forms of CD8 antibodies are available for different experimental techniques?

CD8 antibodies are available in multiple forms to accommodate diverse experimental needs:

  • Unconjugated primary antibodies for flexible applications

  • Fluorophore-conjugated versions including FITC, PE, and Alexa Fluor dyes for flow cytometry and fluorescence microscopy

  • Horseradish peroxidase (HRP) conjugates for western blotting and ELISA

  • Agarose-conjugated forms for immunoprecipitation experiments

  • Antibody fragments including Fab and F(ab')2 for specific applications where Fc-mediated effects must be avoided
    The selection should be guided by your specific experimental requirements and the detection systems available in your laboratory.

How do I address the heterogeneity in CD8 antibody-mediated T-cell activation in my experimental design?

  • Positive activation controls (anti-CD3 antibodies, PMA/ionomycin, or cognate peptide-pulsed targets)

  • Isotype controls to rule out non-specific binding effects

  • Experiments with antibody fragments (Fab, F(ab')2) versus whole antibodies to distinguish between effects requiring crosslinking
    This heterogeneity should be explicitly acknowledged in your research publications to avoid confusion and misinterpretation of results across the field.

What mechanisms explain the contradictory effects of different anti-CD8 antibodies on T-cell activation?

The contradictory effects of anti-CD8 antibodies on T-cell activation can be attributed to several mechanistic factors:

How can I exploit anti-CD8 antibodies to study the differential role of CD8α versus CD8β in T-cell function?

To study the differential roles of CD8α and CD8β, a multifaceted approach using subunit-specific antibodies is recommended:

What are the implications of antibody-mediated CD8 engagement for adoptive T-cell therapy development?

The ability of certain anti-CD8 antibodies to trigger T-cell effector function has significant implications for adoptive T-cell therapy development:

  • Enhanced T-cell activation: CD8-targeting antibodies like OKT8 that can deliver activation signals may be leveraged to augment the activity of therapeutic T-cells. This could potentially boost anti-tumor responses by increasing cytokine production and cytotoxicity .

  • Improved antigen recognition: Some anti-CD8 antibodies enhance TCR/pMHCI on-rates, which could be exploited to improve the ability of adoptively transferred T-cells to recognize tumor antigens, especially those with low affinity for TCR .

  • Selective targeting strategies: The heterogeneity in T-cell responses to different anti-CD8 antibodies could be utilized to selectively activate or inhibit specific T-cell subsets based on their CD8-dependency characteristics.

  • Bispecific antibody development: Insights from anti-CD8 antibody studies could inform the design of bispecific antibodies that simultaneously engage CD8 and tumor-associated antigens, potentially enhancing tumor-specific T-cell responses.

  • Safety considerations: The potent activation potential of certain anti-CD8 antibodies raises important safety concerns for therapeutic applications, including the risk of cytokine release syndrome or off-target effects.
    These implications underscore the potential utility of anti-CD8 antibodies not only as research tools but also as templates for developing novel immunotherapeutic strategies.

What are the best practices for using fluorophore-conjugated CD8 antibodies in flow cytometry?

For optimal results with fluorophore-conjugated CD8 antibodies in flow cytometry:

  • Fluorophore selection: Choose appropriate fluorophores based on your cytometer configuration and experimental design. Common options include:

    • Alexa Fluor 488 (excitation: 488 nm, emission: 517 nm)

    • FITC, PE, and APC conjugates

  • Titration: Always titrate antibodies to determine optimal concentration, balancing between sufficient signal intensity and minimizing non-specific binding. Start with manufacturer-recommended concentrations and adjust as needed.

  • Sample preparation:

    • Use fresh samples when possible

    • Include a viability dye to exclude dead cells

    • Block Fc receptors to reduce non-specific binding

    • Maintain samples at 4°C to prevent internalization of surface markers

  • Controls:

    • Include unstained controls to set baseline fluorescence

    • Use isotype controls matching the antibody's isotype, species and fluorophore

    • Include single-color controls for compensation when using multiple fluorophores

  • Data analysis considerations:

    • Use consistent gating strategies across experiments

    • Consider the potential impact of antibody binding on other parameters being measured

    • Be aware that some anti-CD8 antibodies may alter CD8 expression levels during sample processing

  • Storage considerations: Protect fluorophore-conjugated antibodies from light and store according to manufacturer recommendations. For Alexa Fluor 488-labeled antibodies, protect from light and avoid repeated freeze-thaw cycles .

How can I optimize CD8 antibody-based protocols for studying rare antigen-specific T-cell populations?

Optimizing CD8 antibody protocols for rare antigen-specific T-cell populations requires specialized approaches:

  • Enrichment strategies:

    • Implement magnetic bead-based enrichment before analysis

    • Consider using fluorescence-activated cell sorting (FACS) for pre-enrichment

    • Apply density gradient centrifugation to isolate lymphocytes

  • Enhanced tetramer staining:

    • Utilize CD8 antibodies that enhance TCR/pMHCI on-rates, such as OKT8, which has been shown to improve pMHCI tetramer staining and visualization of antigen-specific CD8+ T-cells

    • Optimize tetramer concentration and incubation conditions

    • Use combinatorial tetramer approaches with different fluorophores

  • High-dimensional analysis:

    • Incorporate mass cytometry (CyTOF) for simultaneous detection of multiple parameters

    • Apply spectral flow cytometry to increase the number of detectable markers

    • Design panels that include markers of T-cell exhaustion, memory status, and activation alongside CD8

  • Signal amplification:

    • Consider secondary antibody approaches for signal enhancement

    • Implement tyramide signal amplification where applicable

    • Use branched DNA technology for detecting low-abundance markers

  • Data acquisition considerations:

    • Collect more events than standard protocols (aim for at least 1-5 million events)

    • Reduce flow rate during acquisition to improve resolution

    • Implement real-time gating to focus collection on populations of interest
      This methodical approach maximizes the chances of detecting and characterizing rare antigen-specific CD8+ T-cell populations even when they constitute less than 0.01% of total T-cells.

What controls should be included when using anti-CD8 antibodies in functional assays?

When using anti-CD8 antibodies in functional assays, comprehensive controls are essential for accurate interpretation:

  • Positive activation controls:

    • Target cells pulsed with cognate peptide (typically at 10^-7 M concentration)

    • Anti-CD3 antibodies (e.g., 10 μg/ml UCHT1)

    • PMA (50 ng/ml) and ionomycin (1 μg/ml) stimulation

  • Antibody-specific controls:

    • Isotype-matched control antibodies at equivalent concentrations

    • Concentration gradients of anti-CD8 antibodies to establish dose-response relationships

    • Secondary crosslinking controls (with and without anti-mouse IgG antibodies)

  • Fragment controls:

    • Test Fab and F(ab')2 fragments alongside whole antibodies to distinguish between effects requiring crosslinking versus simple binding

    • Include Fc fragment controls to identify potential Fc receptor-mediated effects

  • Cell-specific controls:

    • Include CD8-negative cells (e.g., CD4+ T-cell clones) to confirm specificity

    • Test multiple CD8+ T-cell clones with different antigen specificities to account for clone-specific responses

  • Time course controls:

    • Measure responses at multiple time points to capture both early and late activation events

    • Include pre-treatment time course to assess temporal effects of antibody binding

  • Technical controls:

    • Include unstimulated cells to establish baseline activity

    • Prepare technical replicates to account for experimental variation
      This comprehensive control strategy enables accurate attribution of observed effects to specific CD8-mediated mechanisms rather than non-specific or technical artifacts.

What are the appropriate methods for quantifying antibody-mediated effects on CD8+ T-cell activation?

Quantifying antibody-mediated effects on CD8+ T-cell activation requires multiple complementary readouts:

  • Cytokine and chemokine production:

    • Measure release using ELISA or cytometric bead array

    • Implement intracellular cytokine staining for single-cell analysis

    • Consider multiplexed approaches to capture diverse cytokine profiles

  • Cytotoxicity assessment:

    • Chromium release assays with 2×10^3 T-cells and target cells in 100 μl medium

    • Flow cytometry-based killing assays using fluorescent dyes

    • Real-time cell analysis systems for continuous monitoring of cytotoxicity

  • Activation marker expression:

    • Flow cytometric analysis of early activation markers (CD69, CD25)

    • Later activation markers (HLA-DR, CD38)

    • Exhaustion/inhibitory markers (PD-1, CTLA-4, TIM-3)

  • Signaling pathway activation:

    • Phospho-flow cytometry to detect phosphorylation of key signaling molecules

    • Western blotting for p56 lck phosphorylation and other signaling components

    • Calcium flux assays for immediate signaling events

  • Functional assays:

    • Proliferation assays using dye dilution or thymidine incorporation

    • Degranulation assays measuring CD107a surface expression

    • TCR downregulation as a surrogate for T-cell activation

  • Biophysical measurements:

    • Surface plasmon resonance to assess effects on TCR/pMHCI on-rates

    • Single-cell force microscopy to measure cell-cell adhesion strength

    • Imaging techniques to visualize immunological synapse formation
      When implementing these methods, ensure comparison between multiple anti-CD8 antibody clones to account for the established heterogeneity in their effects on T-cell activation .

How should CD8 antibody concentration be optimized for different experimental applications?

Optimizing CD8 antibody concentration requires systematic approach tailored to each application:

  • Flow cytometry titration:

    • Prepare a serial dilution series (typically 2-fold) of the antibody

    • Plot signal-to-noise ratio against antibody concentration

    • Select the concentration that provides maximum separation between positive and negative populations

    • Typical working concentrations range from 1-10 μg/ml, but optimal concentrations vary by clone and application

  • Functional assays optimization:

    • Test broad concentration range (e.g., 0.1-50 μg/ml)

    • For activation assays, use the maximum possible concentration within practical limits

    • For blocking experiments, determine the minimum concentration achieving complete inhibition

    • Consider conducting parallel experiments with different antibody concentrations

  • Binding studies optimization:

    • For surface plasmon resonance, determine concentration through pilot experiments

    • For tetramer enhancement, test concentrations between 0.5-10 μg/ml

    • For bead-based assays, titrate antibody against standard concentration of beads (e.g., 1×10^5 antibody-coupled beads)

  • Tissue staining concentration optimization:

    • Begin with manufacturer's recommended concentration

    • Create a dilution series and assess staining intensity and specificity

    • Optimize counterstaining to ensure clear distinction of positive structures

  • Application-specific considerations:

    • For some conjugated antibodies, optimal concentration may differ from unconjugated versions

    • Storage conditions can affect antibody activity over time, requiring re-titration

    • Different antibody preparations may vary in activity, necessitating lot-specific optimization

  • Documentation practices:

    • Maintain detailed records of optimization experiments

    • Include antibody concentration information in methods sections of publications

    • Report concentration in standardized units (μg/ml or nM) for reproducibility This systematic approach ensures optimal antibody performance while minimizing waste of valuable reagents and maximizing experimental reproducibility.

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