CLO Antibody

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Description

CLO Antibody (Anti-KITLG)

CLO is a synonym for the KIT ligand (KITLG), a protein encoded by the KITLG gene. KITLG is critical for stem cell development, mast cell survival, and melanocyte migration. Anti-CLO antibodies are research tools designed to detect or block KITLG.

Key Applications

  • Western Blot (WB) and ELISA: Detecting KITLG expression in cellular lysates or serum .

  • Immunohistochemistry (IHC-p): Localizing KITLG in tissue samples .

  • Functional Studies: Inhibiting KITLG interactions to study cellular signaling pathways.

CLO Test in Helicobacter pylori Diagnosis

The CLO test (Campylobacter-like organism test) is a rapid urease test used to diagnose H. pylori infections. It detects urease activity in gastric mucosa biopsies, breaking down urea into ammonia and carbon dioxide. This test is not antibody-based but is often compared to serum antibody tests (e.g., IgG ELISA) and stool antigen tests.

Performance Metrics

Table 2 compares diagnostic tools for H. pylori, using the CLO test as a reference:

TestSensitivitySpecificityPPVNPVAccuracy
CLO Test 71.96–85.07%100%100%75.81%85.07%
Serum Antibody (IgG) 89.7%82.2%86.1%79.6%84.0%
Stool Antigen Test 72.7%94.3%95.9%64.9%80.0%

PPV = Positive Predictive Value; NPV = Negative Predictive Value .

Key Findings

  • CLO Test: Highest specificity (100%) but moderate sensitivity (72.7–85.07%) .

  • Serum Antibody: Higher sensitivity (89.7%) but lower specificity (82.2%) .

  • Stool Antigen Test: Balanced sensitivity (72.7%) and specificity (94.3%) .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
CLO antibody; GFA1 antibody; MEE5 antibody; VAJ-1 antibody; At1g06220 antibody; F9P14.8110 kDa U5 small nuclear ribonucleoprotein component CLO antibody; Protein CLOTHO antibody; Protein GAMETOPHYTE FACTOR 1 antibody; Protein MATERNAL EFFECT EMBRYO ARREST 5 antibody; Protein VAJRA-1 antibody; SNU114 homolog antibody
Target Names
CLO
Uniprot No.

Target Background

Function

CLO Antibody is a splicing factor involved in pre-mRNA splicing and a component of the spliceosome. It is essential for reproduction. In the female gametophyte, CLO Antibody is necessary for the egg cell and central cell fate determination, thus contributing to reproductive success. It participates in a mechanism that prevents accessory cells from adopting gametic cell fate. CLO Antibody is crucial to restrict LIS expression to interfere with egg-cell specification. CLO Antibody is a probable component of U5 small nuclear ribonucleoprotein (snRNP) which is required for pre-mRNA splicing. It plays a vital role in female gametogenesis and embryo development. CLO Antibody is required for the control of polarized cell growth and cell proliferation during floral organ morphogenesis.

Gene References Into Functions
  1. Interaction with ROOT INITIATION DEFECTIVE 1 is involved in female gametophyte development. PMID: 27683728
  2. CLOTHO/GAMETOPHYTIC FACTOR 1 (CLO/GFA1) is necessary for the restricted expression of egg- and central-cell fate. CLO/GFA1 encodes the Arabidopsis homologue of Snu114, a protein considered an essential component of the spliceosome. PMID: 18702672
  3. VAJ/GFA1/CLO co-localized with a serine/arginine-rich (SR) protein SC35 in the nuclei and has a novel role in the directional control of floral organ growth in Arabidopsis. PMID: 19168457
  4. GFA1 is involved in mRNA biogenesis through interaction with AtBrr2 and AtPrp8 and functions in megagametogenesis and embryogenesis in plants. [GFA1] PMID: 19261069
Database Links

KEGG: ath:AT1G06220

STRING: 3702.AT1G06220.1

UniGene: At.15476

Protein Families
TRAFAC class translation factor GTPase superfamily, Classic translation factor GTPase family
Subcellular Location
Nucleus speckle.
Tissue Specificity
Expressed in flower buds, open flowers and siliques. Expressed at low levels in rosettes leaves, cauline leaves and stems.

Q&A

What is the CLO test and how does it relate to Helicobacter pylori detection?

The CLO (Campylobacter-like organism) test is a rapid urease test specifically designed for detecting Helicobacter pylori infection in gastric tissue samples . This test works by identifying the urease enzyme produced by H. pylori, which converts urea into ammonia and carbon dioxide. When a gastric biopsy specimen containing H. pylori is placed in the test medium, the resulting pH change causes a color shift, indicating a positive result. The CLO test shows excellent agreement with histological methods, with studies demonstrating a concordance rate of 95.6% between CLO test results and histopathology findings . This high reliability makes it one of the primary diagnostic tools that clinicians depend on for H. pylori detection in clinical research settings.

How does the CLO test compare with other H. pylori detection methods?

Research indicates varying concordance rates between different H. pylori detection methods and histology:

  • CLO test shows the highest concordance rate with histology at 95.6%

  • Stool antigen (SA) test follows at 92.1% concordance

  • H. pylori culture demonstrates 87.5% concordance

These differences are statistically significant (P < 0.001), as illustrated in the following data:

Testing MethodTotal CasesPositive CasesNegative CasesPositivity RateConcordance with Histology
CLO test52810442419.8%95.6%
SA test3066624021.5%92.1%
H. pylori culture56214541725.8%87.5%

The kappa statistic for agreement between histology and CLO test is 0.86 (95% CI: 0.81-0.92), indicating excellent agreement between these two methods .

What factors influence CLO test sensitivity and specificity?

The accuracy of the CLO test can be affected by several research variables:

  • Recent use of antibiotics or proton pump inhibitors can reduce bacterial load, leading to false negatives

  • The distribution of H. pylori in the gastric mucosa may be patchy, requiring multiple biopsy samples for accurate detection

  • Low bacterial density may result in false negatives due to insufficient urease activity

  • Contamination with urease-producing bacteria can occasionally cause false positives

  • Timing of result interpretation is critical, as reading too early may miss slow-positive results, while reading too late may increase false positives

Understanding these factors is essential when designing research protocols that incorporate CLO testing, especially when investigating discrepancies between different diagnostic methods.

What methodological approaches should be used when investigating discordance between histology and CLO test results?

When facing discordant results between histology and CLO testing, researchers should implement a systematic analytical approach:

  • Statistical validation: Calculate the kappa statistic to quantify the degree of agreement between methods. Values ≥0.75 indicate excellent agreement, 0.4-0.75 indicate fair to good agreement, and <0.4 indicate poor agreement .

  • Comprehensive re-evaluation: Examine the specific pattern of discordance:

    • CLO-positive/histology-negative cases should trigger investigation into possible contamination or non-specific reactions

    • CLO-negative/histology-positive cases warrant examination of specimen quantity, quality, and potential inhibitory factors

  • Clinical correlation: Review patient history for recent antibiotic use, PPI therapy, or previous H. pylori treatment that could affect test results.

  • Advanced statistical analysis: Consider multivariate analysis to identify factors predicting discordance:

ComparisonHistology+ / CLO+Histology+ / CLO-Histology- / CLO+Histology- / CLO-
Count95149410

This approach facilitates identification of potential methodological issues and helps establish more robust diagnostic algorithms for research settings.

How can researchers optimize antibody-based detection methods for H. pylori?

Optimization of antibody-based detection methods for H. pylori requires attention to several critical parameters:

  • Antibody selection: Choose antibodies with demonstrated specificity for conserved H. pylori epitopes. Monoclonal antibodies targeting CagA or VacA proteins often provide superior specificity compared to polyclonal alternatives.

  • Immunohistochemistry (IHC) protocol refinement:

    • Optimize antigen retrieval conditions (temperature, pH, duration)

    • Determine optimal antibody dilutions through titration experiments

    • Select appropriate detection systems based on required sensitivity

    • Include rigorous positive and negative controls

  • Implementation of enzyme-linked immunosorbent assay (ELISA):

    • For stool antigen testing, sandwich ELISA formats typically provide better sensitivity

    • Capture antibodies should be immobilized to solid surfaces under optimized conditions

    • Detection antibodies conjugated to appropriate enzymes or fluorophores should be carefully titrated

    • Washing procedures must be standardized to minimize background

These optimization strategies are especially important when developing new diagnostic approaches or validating existing methods for specific research applications.

What considerations are important when designing antibody drug conjugates (ADCs) targeting H. pylori?

While ADCs are primarily developed for cancer therapy, the principles of ADC design have potential applications in antimicrobial research targeting H. pylori:

  • Target selection is critical - identifying H. pylori-specific surface antigens that are minimally expressed on human tissues reduces off-target effects.

  • Design of Experiments (DOE) methodology is essential for process development:

    • Develop scientifically sound analytical methods suitable for pre-clinical and clinical testing

    • Establish process conditions to meet key quality attributes

    • Ensure sufficient understanding of process robustness for safe scale-up

    • Establish appropriate control strategies

  • For ADC analysis, multiple pharmacokinetic methods are required:

    • Total antibody concentration measurement via ligand binding assay or hybrid LC-MS/MS

    • Conjugated drug quantification using similar approaches

    • Free payload assessment via LC-MS/MS

    • Metabolite profiling to identify breakdown products

Researchers must consider the unique challenges of developing ADCs for infectious disease targets, including stability in the gastric environment and specificity for bacterial versus human cells.

What is the proper procedure for conducting and interpreting a CLO test in research settings?

A standardized protocol for CLO testing in research settings should include:

  • Specimen collection:

    • Obtain gastric biopsy specimens from appropriate anatomical locations (antrum and corpus)

    • Use clean biopsy forceps to prevent cross-contamination

    • Avoid contact with formalin or other fixatives before CLO testing

  • Test procedure:

    • Place the fresh biopsy specimen directly onto the CLO test gel/medium

    • Ensure complete contact between the specimen and test medium

    • Seal the test according to manufacturer instructions

    • Incubate at the specified temperature (typically room temperature or 37°C)

  • Result interpretation:

    • Observe color change at standardized time points (typically 1 hour, 3 hours, and 24 hours)

    • Document time to positive result, as this may correlate with bacterial load

    • Interpret based on manufacturer's color chart, typically with yellow-to-red color change indicating a positive result

    • Record results using standardized nomenclature

  • Quality control:

    • Include positive and negative controls with each batch

    • Periodically validate CLO test performance against histology and culture

    • Document lot numbers and expiration dates of test kits

Adherence to this protocol maximizes reproducibility and reliability of results, especially in multi-center research studies.

How should researchers approach the validation of antibody-based methods for H. pylori detection?

Validation of antibody-based methods requires a systematic approach:

  • Analytical validation parameters:

    • Specificity: Test against related bacterial species and non-infected tissues

    • Sensitivity: Determine lower limits of detection using serial dilutions

    • Precision: Assess intra- and inter-assay variability

    • Accuracy: Compare with established gold standard methods

    • Robustness: Evaluate performance under varying conditions

  • Implementation of ELISA techniques:

    • For H. pylori detection, sandwich ELISA is typically preferred

    • A capture antibody immobilized to a multi-well plate binds the target antigen

    • A detection antibody conjugated to biotin and streptavidin-HRP provides the signal

    • Signal strength corresponds to antigen concentration

    • Multiple ELISA formats (direct, indirect, sandwich, competitive) should be evaluated for each specific application

  • Statistical validation:

    • Calculate concordance rates with established methods

    • Determine kappa statistics for method agreement

    • Perform ROC curve analysis to establish optimal cutoff values

    • Conduct sensitivity and specificity analyses against gold standard methods

This comprehensive validation approach ensures that newly developed or modified antibody-based methods provide reliable results for H. pylori research.

What controls should be implemented when using immunohistochemistry (IHC) for H. pylori detection?

When implementing IHC for H. pylori detection, the following controls are essential:

  • Positive controls:

    • Known H. pylori-positive gastric tissue sections

    • Controls should represent varying degrees of bacterial density

    • Include tissue with both active and chronic infection patterns

  • Negative controls:

    • Known H. pylori-negative gastric tissue

    • Antibody diluent controls (primary antibody omitted)

    • Isotype controls to detect non-specific binding

    • Tissue sections from alternative organs to verify specificity

  • Technical controls:

    • Internal run controls in each batch to monitor staining consistency

    • Duplicate samples to assess reproducibility

    • Serial sections tested with alternative methods (e.g., Giemsa stain)

  • Analytical controls:

    • Blind reading by multiple observers to assess inter-observer variability

    • Digital image analysis to standardize interpretation when possible

    • Participation in external quality assessment programs

Implementation of these rigorous controls minimizes the risk of false positive and false negative results, enhancing the reliability of IHC for H. pylori detection in research applications.

How should researchers address discrepant results between histology and CLO tests?

When confronted with discordant results between histology and CLO testing, researchers should follow this systematic approach:

  • Confirm technical validity:

    • Review histological processing and staining procedures

    • Verify CLO test kit storage and expiration

    • Assess biopsy sampling adequacy and location

  • Perform additional testing:

    • Stool antigen testing offers 92.1% concordance with histology

    • H. pylori culture, though more challenging, provides definitive identification

    • PCR-based methods may detect lower bacterial loads

    • Serology to determine past exposure

  • Consider clinical factors:

    • Recent antibiotic use (within 4 weeks)

    • Proton pump inhibitor therapy

    • Previous eradication therapy

    • Bleeding status at time of biopsy

  • Statistical analysis of discrepancies:

    • Histology+/CLO- discordance occurred in 14 of 528 cases (2.7%)

    • Histology-/CLO+ discordance occurred in 9 of 528 cases (1.7%)

This structured approach enables researchers to resolve discrepancies methodically and establish more robust diagnostic algorithms for future studies.

What factors contribute to false positive and false negative results in antibody-based H. pylori detection?

Several factors can compromise the accuracy of antibody-based H. pylori detection:

  • Causes of false negative results:

    • Low bacterial density below detection threshold

    • Patchy distribution of bacteria in gastric mucosa

    • Recent antibiotic or PPI therapy

    • Improper specimen collection or handling

    • Suboptimal antibody specificity or sensitivity

    • Cross-reactivity with non-target antigens

  • Causes of false positive results:

    • Cross-reactivity with other Helicobacter species

    • Non-specific binding to inflammatory cells

    • Contamination during specimen processing

    • Incorrect interpretation of background staining

    • Deficient washing procedures in immunoassays

  • Patient-specific factors:

    • Prior partial treatment leading to reduced bacterial load

    • Gastric atrophy or intestinal metaplasia

    • Concomitant use of medications affecting bacterial growth

    • Presence of non-H. pylori urease-producing organisms

Understanding these factors enables researchers to implement appropriate controls and interpretative algorithms to minimize diagnostic errors.

How can researchers improve concordance rates between different H. pylori testing methods?

To enhance concordance between testing methodologies, researchers should implement these strategies:

  • Standardization of specimen collection:

    • Collect multiple biopsies (minimum 2 antral, 2 corpus)

    • Standardize biopsy size and depth

    • Implement consistent processing protocols

  • Methodology optimization:

    • Use validated antibodies with demonstrated specificity

    • Implement optimized staining protocols

    • Standardize result interpretation criteria

    • Establish clear cutoff values for quantitative methods

  • Complementary testing strategies:

    • Implement multiple testing methodologies in parallel

    • Develop diagnostic algorithms that account for the strengths and limitations of each method

    • Consider the implementation of "test and treat" strategies for discordant cases

  • Statistical approaches:

    • Apply kappa statistics to quantify inter-test agreement

    • Excellent agreement: kappa ≥0.75

    • Fair to good agreement: kappa 0.4-0.75

    • Poor agreement: kappa <0.4

By implementing these strategies, researchers can significantly improve the reliability and reproducibility of H. pylori detection across different methodological platforms.

What emerging antibody-based technologies show promise for improving H. pylori detection?

Several innovative antibody-based approaches are advancing H. pylori diagnostics:

  • Multiplexed antibody arrays:

    • Simultaneous detection of multiple H. pylori virulence factors

    • Integration of host response biomarkers

    • Higher diagnostic accuracy through multivariate signal analysis

  • Point-of-care antibody-based lateral flow assays:

    • Rapid detection without laboratory infrastructure

    • Integration with smartphone-based readers for objective interpretation

    • Potential for quantitative assessment of bacterial load

  • Automated immunohistochemistry platforms:

    • Standardized staining protocols

    • Digital image analysis for objective interpretation

    • Integration with artificial intelligence for pattern recognition

  • Novel antibody engineering approaches:

    • Development of recombinant antibody fragments with enhanced specificity

    • Multi-specific antibodies targeting conserved H. pylori epitopes

    • Antibody-based molecular imaging probes for in vivo detection

These emerging technologies offer significant potential for enhancing diagnostic accuracy while reducing time-to-result and methodological complexity.

How might antibody drug conjugates (ADCs) be applied to H. pylori research beyond diagnostics?

ADC technology presents intriguing possibilities for H. pylori research beyond traditional diagnostics:

  • Targeted therapeutic applications:

    • Development of ADCs delivering antimicrobial payloads directly to H. pylori

    • Potential to overcome antibiotic resistance through novel mechanisms

    • Reduction of systemic side effects through targeted delivery

  • Mechanistic research tools:

    • ADCs as probes for studying H. pylori pathogenesis

    • Investigation of bacterial internalization and trafficking

    • Elucidation of virulence factor functions through targeted inhibition

  • Process development considerations:

    • Application of Design of Experiments (DOE) methodology

    • Development of scientifically sound analytical methods

    • Establishment of process conditions meeting key quality attributes

    • Understanding of process robustness for scale-up

  • Analytical methods for ADC characterization:

    • Total antibody concentration measurement

    • Conjugated drug quantification

    • Free payload assessment

    • Metabolite profiling and biotransformation studies

This emerging research direction could potentially revolutionize approaches to H. pylori eradication, particularly for antibiotic-resistant strains.

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