CBL7 Antibody

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Description

CBL Antibody Overview

CBL antibodies target the E3 ubiquitin ligase CBL, which regulates intracellular signaling by tagging proteins for degradation . These antibodies are widely used in Western blotting (WB), immunohistochemistry (IHC), and flow cytometry to study B-cell receptor (BCR) trafficking, T-cell activation, and oncogenic pathways .

Functional Insights from CBL Antibody Studies

  • BCR Trafficking: CBL antibodies reveal that CBL ubiquitinates CD79A/CD79B in naive B cells, enabling antigen internalization and lysosomal sorting for T-cell activation .

  • Knockout Validation: Western blots with ab309549 confirm CBL specificity using knockout HCT116 and HEK-293T cell lines .

  • Tissue Localization: Immunohistochemistry with ab309549 shows cytoplasmic CBL expression in human tonsil, spleen, and testis tissues .

4.1. Mechanistic Studies

CBL antibodies demonstrate that CBL deficiency blocks BCR-antigen complex trafficking to lysosomes in naive B cells, impairing germinal center formation .

4.2. Cancer Research

  • CBL antibodies detect dysregulated ubiquitination in leukemia (e.g., K562, Raji cells) .

  • AF5998 identifies CBL overexpression in Burkitt’s lymphoma, correlating with poor prognosis .

Validation and Reproducibility

Recent initiatives emphasize rigorous antibody validation using knockout controls and mass spectrometry . For example:

  • ab309549 was validated in 12 cell lines and 4 tissue types, showing no cross-reactivity in CBL-knockout models .

  • Recombinant CBL antibodies outperform polyclonal variants in specificity and reproducibility .

Future Directions

CBL antibodies are being explored for therapeutic targeting, such as:

  • Enhancing antigen presentation in vaccine development .

  • Blocking oncogenic signaling in CBL-mutant cancers .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
CBL7 antibody; SCABP3 antibody; At4g26560 antibody; M3E9.10 antibody; T15N24_10Calcineurin B-like protein 7 antibody; SOS3-like calcium-binding protein 3 antibody
Target Names
CBL7
Uniprot No.

Target Background

Function
CBL7 antibody acts as a calcium sensor. CBL proteins interact with CIPK serine-threonine protein kinases. The binding of a CBL protein to the regulatory NAF domain of a CIPK protein leads to the activation of the kinase in a calcium-dependent manner.
Gene References Into Functions
  1. Expression of CBL7 was predominantly observed in the root of young seedlings and was significantly induced by nitrate starvation. PMID: 26549233
Database Links

KEGG: ath:AT4G26560

STRING: 3702.AT4G26560.1

UniGene: At.3373

Protein Families
Calcineurin regulatory subunit family
Subcellular Location
Cytoplasm. Nucleus.

Q&A

What are the key differences between CCR7 and CD7 antibodies?

CCR7 antibodies target the C-C chemokine receptor type 7, a G protein-coupled receptor involved in lymphocyte trafficking and homing to lymphoid tissues. The mouse anti-CCR7 recombinant antibody (clone CBL704) specifically binds to CCR7 and can neutralize its bioactivity . In contrast, CD7 antibodies target a 40 kDa transmembrane, single-chain glycoprotein belonging to the immunoglobulin gene superfamily. CD7 is expressed in the majority of immature and mature T-lymphocytes and plays an essential role in T-cell interactions and T-cell/B-cell interaction during early lymphoid development . These antibodies serve different research purposes due to their distinct target proteins and associated cellular functions.

What are the primary applications of CCR7 antibodies in research?

CCR7 antibodies are versatile research tools with applications in neutralization assays (Neut), Western blotting (WB), and functional studies (FuncS) . Researchers commonly employ these antibodies to investigate lymphocyte migration, immune cell homing, and chemokine-mediated signaling pathways. The recombinant anti-human CCR7 antibody offers increased sensitivity and confirmed specificity, making it valuable for studying CCR7's role in normal immune function and in diseases such as cancer metastasis and inflammatory disorders . The neutralizing capability of the CBL704 clone makes it particularly useful when studying the functional consequences of blocking CCR7 signaling in experimental models.

How is CD7 antibody (LP15) used as a diagnostic marker in hematological research?

CD7 antibody serves as a critical diagnostic marker in hematopathology research, particularly for identifying T-cell lineage in leukemias and lymphomas. It is consistently expressed in lymphoblastic lymphomas and leukemias, making it a valuable marker for identifying these neoplastic proliferations . Interestingly, CD7 expression is conspicuously absent in adult T-cell leukemia/lymphoma and is not expressed in Sezary cells, creating a distinctive immunophenotypic pattern that researchers can leverage for differential diagnosis . In experimental settings, CD7 antibody is typically used in immunohistochemistry on both paraffin-embedded and frozen tissue sections, with tonsil and lymph node tissues serving as appropriate controls for validation.

What are the optimal conditions for using recombinant CCR7 antibodies in flow cytometry experiments?

For optimal flow cytometry results with recombinant CCR7 antibodies, researchers should implement a systematic approach to antibody titration, beginning with the manufacturer's recommended concentration and testing 2-fold serial dilutions. The CCR7 antibody (clone CBL704) and related products like HPAB-0473-CN-F(E) and HPAB-0474-CN-F(E) have been validated for flow cytometry applications . When designing your protocol, consider using a buffer containing 0.5-1% BSA and 0.1% sodium azide in PBS for cell suspension. Incubate cells with the antibody for 30 minutes at 4°C in the dark, followed by washing steps. Since CCR7 can be internalized upon ligand binding, avoid pre-activating cells with CCL19 or CCL21 before staining. For multi-parameter flow cytometry, careful compensation is essential due to the dynamic expression of CCR7 on different lymphocyte subsets.

How should researchers design neutralization assays using CCR7 antibodies?

When designing neutralization assays with CCR7 antibodies like clone CBL704, researchers should employ a chemotaxis inhibition approach that quantitatively measures the antibody's ability to block CCR7-dependent cell migration. First, establish a baseline migration response using CCR7-expressing cells (such as activated T cells or CCR7-transfected cell lines) and titrated concentrations of CCL19 or CCL21 ligands. Then, pre-incubate cells with varying concentrations of the neutralizing anti-CCR7 antibody (0.1-10 μg/ml) for 30-60 minutes at 37°C before adding them to the upper chamber of a transwell system . The lower chamber should contain the chemokine at its optimal concentration. After 3-4 hours of incubation, quantify migrated cells using flow cytometry or cell counting. Include appropriate controls: isotype control antibodies, CCR7-negative cells, and wells without chemokine. The percent inhibition calculated against the non-antibody-treated control provides a quantitative measure of neutralization efficiency.

What methodological considerations are important when using CD7 antibody for immunohistochemistry on different tissue types?

When performing immunohistochemistry with CD7 antibody (LP15), several tissue-specific methodological considerations are critical for reliable results. For paraffin-embedded tissues, heat-induced epitope retrieval using citrate buffer (pH 6.0) or EDTA buffer (pH 9.0) is essential to unmask the CD7 epitope that may be cross-linked during fixation . Optimal primary antibody dilution should be determined empirically, but typically ranges from 1:50 to 1:200 with incubation for 30-60 minutes at room temperature or overnight at 4°C. For frozen sections, fixation in cold acetone for 10 minutes is recommended before antibody application. When examining hematological malignancies, include appropriate positive controls (tonsil or lymph node) where CD7 expression patterns are well-established . Notably, when analyzing T-cell lymphomas, be aware that CD7 negativity in a T-cell population is diagnostically significant, particularly for adult T-cell leukemia/lymphoma, so dual staining with other T-cell markers is advisable to confirm lineage.

How can biophysics-informed modeling improve antibody specificity design for CCR7 targeting?

Biophysics-informed modeling represents a sophisticated approach to enhancing CCR7 antibody specificity beyond traditional selection methods. This approach involves constructing computational models that identify distinct binding modes associated with particular ligands, allowing researchers to predict and generate antibody variants with customized specificity profiles . To implement this strategy for CCR7 targeting, researchers should first conduct phage display experiments selecting antibodies against CCR7 and closely related receptors (such as CCR6 or CCR9). High-throughput sequencing of selected antibodies provides the dataset for model training. The computational model can then disentangle binding modes associated with each receptor, even when they are chemically similar . By optimizing energy functions associated with each binding mode, researchers can design novel antibody sequences that either specifically target CCR7 (by minimizing binding energy to CCR7 while maximizing it for other receptors) or create cross-reactive antibodies that recognize multiple chemokine receptors. This approach overcomes limitations of experimental selection and enables the generation of antibodies with precisely engineered specificity profiles not present in initial libraries.

What strategies can overcome glycan-mediated steric hindrances when developing high-affinity antibodies?

Glycan-mediated steric hindrance represents a significant challenge in antibody development, particularly when targeting heavily glycosylated epitopes. Drawing insights from the N6 HIV antibody development, researchers can implement several strategies to overcome these obstacles. First, structural analysis of antibody-antigen complexes should guide the engineering of antibody orientations that avoid potential glycan clashes . This may involve modifying the angle of approach by altering CDR loops, particularly in the light chain where glycan interactions commonly occur. Second, researchers should consider evolving antibodies through a divergent maturation pathway that promotes a mode of recognition relying on multiple distributed contacts rather than concentrated interactions that can be disrupted by glycosylation . Experimentally, this can be achieved through directed evolution with selection pressures that favor antibodies maintaining binding in the presence of varying glycosylation patterns. Finally, computational analysis of somatic hypermutation patterns can identify positions where mutations confer tolerance to glycan interference, which can then be incorporated into antibody design . Combined, these approaches can yield antibodies like N6 that maintain high affinity binding despite variations in target glycosylation.

How can researchers assess potential autoreactivity and polyreactivity profiles of novel recombinant antibodies?

Comprehensive assessment of autoreactivity and polyreactivity is crucial before advancing novel recombinant antibodies to therapeutic applications. Researchers should implement a multi-platform screening approach similar to that used for the N6 antibody . Begin with cellular binding assays using HEp-2 epithelial cell lines, which express a wide array of human cellular antigens; positive binding indicates potential autoreactivity . Next, conduct ELISA-based screening against common autoantigens including cardiolipin, nuclear antigens, and extracellular matrix components. For more comprehensive analysis, utilize protein microarrays containing thousands of human proteins (similar to the 9,400-protein panel used for N6 screening) to detect unexpected cross-reactivity . Additionally, assess polyreactivity by testing binding to structurally diverse antigens such as dsDNA, insulin, and lipopolysaccharide. For antibodies showing borderline autoreactivity, ex vivo tissue cross-reactivity studies using immunohistochemistry on human tissue panels can provide further safety information. Finally, in silico analysis comparing antibody sequences to known autoreactive antibodies can identify concerning sequence motifs. This comprehensive approach ensures that promising candidates like recombinant CCR7 antibodies can be properly risk-assessed before further development.

What are the most common sources of inconsistent results when using recombinant antibodies, and how can they be mitigated?

Inconsistent results with recombinant antibodies often stem from several key factors that researchers should systematically address. First, antibody quality variations between lots can occur despite manufacturers' claims of batch-to-batch consistency. Even with recombinant antibodies like the Hi-AffiTM portfolio, which typically offers excellent consistency, researchers should validate each new lot against a reference standard . Second, epitope masking due to differential protein conformation in various experimental conditions is common. For membrane proteins like CCR7, detergent selection during sample preparation critically affects epitope accessibility; test multiple detergents if Western blot results are inconsistent. Third, target protein expression levels may fluctuate based on cell activation state, particularly for receptors like CCR7 that undergo internalization upon ligand binding. Standardize cell treatment protocols and consider time-course experiments to capture dynamic expression changes. Fourth, buffer composition significantly impacts antibody performance; optimize salt concentration, pH, and blocking reagents for each application. Finally, inappropriate storage conditions (repeated freeze-thaw cycles, improper temperature) can compromise antibody functionality. Aliquot antibodies upon receipt and store according to manufacturer specifications to maintain consistent performance throughout your research project.

How should researchers validate the specificity of CD7 antibody when studying rare T-cell subtypes or malignancies?

Validating CD7 antibody specificity for rare T-cell subtypes or unusual malignancies requires a rigorous multi-parameter approach. Begin with antibody validation using flow cytometry on well-characterized control samples, comparing the staining pattern of CD7 antibody (LP15) against other established CD7 clones . For rare T-cell populations, implement a dual-marker strategy using CD7 in combination with lineage-defining markers (CD3, CD2, CD5) and subset-specific markers to precisely identify the population of interest. When studying unusual malignancies, perform antibody blocking experiments by pre-incubating the antibody with recombinant CD7 protein before staining to confirm binding specificity. For additional validation, use siRNA or CRISPR-mediated knockdown of CD7 in cell lines to create negative control samples that should show reduced or absent staining. In tissue studies, compare CD7 antibody staining patterns with RNA expression data (in situ hybridization or single-cell RNA sequencing) to confirm concordance between protein and transcript levels. When interpreting negative staining in T-cell malignancies such as adult T-cell leukemia/lymphoma, always include internal positive controls (normal T-cells) within the same sample to distinguish true CD7 negativity from technical artifacts .

What experimental controls are essential when evaluating antibody-mediated neutralization of CCR7 in functional assays?

Rigorous experimental controls are critical when evaluating CCR7 neutralization to ensure data reliability and interpretability. First, include an isotype-matched control antibody at the same concentration as the CCR7 neutralizing antibody (clone CBL704) to account for non-specific effects of antibody binding . Second, incorporate a dose-response curve of the neutralizing antibody (typically ranging from 0.1-20 μg/ml) to establish the IC50 value and determine the optimal concentration for complete inhibition. Third, use cell lines with confirmed CCR7 expression levels (measured by flow cytometry or qPCR) alongside CCR7-negative cell lines to demonstrate specificity of the neutralization effect. Fourth, test neutralization against multiple CCR7 ligands (both CCL19 and CCL21) as they may exhibit different binding characteristics or trigger distinct signaling pathways despite targeting the same receptor. Fifth, include a positive control neutralizing antibody with established efficacy whenever possible for inter-experimental comparison. Sixth, evaluate multiple downstream readouts of CCR7 signaling (calcium flux, ERK phosphorylation, chemotaxis) as neutralization efficiency may vary between different functional outcomes. Finally, confirm antibody stability under assay conditions by pre-incubating the antibody at the assay temperature for varying durations before testing its neutralizing capacity.

How are computational approaches transforming antibody engineering for enhanced specificity and cross-reactivity?

Computational approaches are revolutionizing antibody engineering by enabling precise control over specificity profiles that was previously unattainable through traditional methods. Modern biophysics-informed modeling approaches allow researchers to disentangle multiple binding modes associated with specific ligands, even when these ligands are chemically similar . This capability facilitates the design of antibodies with customized specificity profiles—either with high specificity for a particular target or with controlled cross-reactivity across multiple related targets. The process involves training computational models on data from phage display experiments, which can then predict outcomes for novel ligand combinations and, more impressively, generate entirely new antibody sequences not present in the initial library . These approaches overcome the inherent limitations of experimental methods, particularly library size constraints and limited control over specificity profiles. For researchers working with CCR7 antibodies, these computational tools could enable the development of variants that specifically distinguish between the two CCR7 ligands (CCL19 and CCL21) or that exhibit precisely controlled cross-reactivity with other chemokine receptors. As these methods continue to advance, they promise to transform how researchers approach antibody design for complex targeting challenges.

What are the implications of studying antibody resistance mechanisms for developing next-generation therapeutic antibodies?

Understanding antibody resistance mechanisms provides critical insights for developing next-generation therapeutic antibodies with enhanced durability and efficacy. The study of N6, an HIV-specific antibody that overcame common resistance mechanisms, offers valuable lessons applicable to other fields . N6 evolved a unique mode of recognition that was not impacted by the loss of individual contacts across the immunoglobulin heavy chain, demonstrating the advantage of distributed binding interactions over concentrated ones . Furthermore, its structural orientation allowed it to avoid steric clashes with glycans, a common mechanism of resistance. For researchers developing therapeutic CCR7 or CD7 antibodies, these principles suggest several strategies: first, engineer antibodies with multiple, redundant contacts with the target protein to create resilience against individual mutations; second, design binding orientations that avoid interaction with regions susceptible to glycosylation or other post-translational modifications; third, target conserved functional epitopes where mutations would compromise the target protein's essential activities . Additionally, developing antibody cocktails that simultaneously target different epitopes can create a higher barrier to resistance development. By proactively addressing potential resistance mechanisms during the antibody design phase, researchers can create more durable therapeutic candidates with sustained efficacy against evolving targets.

How might advances in recombinant antibody technology impact future immunodiagnostic applications for hematological malignancies?

Advances in recombinant antibody technology are poised to transform immunodiagnostic applications for hematological malignancies through several mechanisms. Recombinant technologies offer superior batch-to-batch consistency compared to traditional hybridoma-produced antibodies, addressing a major challenge in diagnostic standardization . This consistency is particularly crucial for quantitative assessments of markers like CD7, where expression levels inform diagnostic and prognostic decisions in T-cell malignancies . Furthermore, recombinant approaches enable the production of engineered antibody fragments (Fab, scFv) with enhanced tissue penetration for immunohistochemistry and reduced background in complex samples . The ability to precisely engineer binding properties also allows for the development of antibodies with calibrated affinities optimized for specific diagnostic applications—higher affinities for detecting low-abundance markers in minimal residual disease, or moderate affinities to better distinguish expression level differences between malignant and normal cells. Additionally, recombinant technology facilitates the creation of bispecific antibodies that simultaneously target multiple markers (such as CD7 and additional T-cell antigens), enabling more precise immunophenotyping in complex cases like lineage ambiguous leukemias . Finally, the animal-free production systems associated with many recombinant antibody platforms reduce batch variability related to animal immunization, resulting in more reproducible diagnostic assays essential for clinical decision-making.

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