CP31B Antibody

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Description

CP31A in Chloroplast RNA Metabolism

Search result extensively discusses CP31A, an Arabidopsis chloroplast RNA-binding protein critical for stabilizing the ndhF mRNA and protecting it from 3′-exonucleolytic degradation. Key findings include:

  • CP31A binds to the 3′-untranslated region (UTR) of ndhF mRNA, preventing degradation and ensuring transcript stability .

  • Loss of CP31A leads to destabilization of ndhF mRNA and downstream antisense RNAs, highlighting its role in RNA metabolism .

  • CP31A also stabilizes a small noncoding RNA (sRNA) at the 3′-end of ndhF, which serves as a degradation footprint .

This protein is unrelated to antibodies or immunology but is critical for plant chloroplast function.

C3b-Targeted Complement Inhibitors

Search results and describe antibodies and fusion proteins targeting C3b, a central component of the complement system:

  • CG001: A C3b-targeted fusion protein (CRIg-FH-Fc) that blocks all three complement pathways (classical, lectin, and alternative). It inhibits C3/C5 convertases, accelerates C3b decay, and reduces hemolysis in models of paroxysmal nocturnal hemoglobinuria (PNH) .

  • S77 IgG: A C3b-specific antibody that inhibits the alternative pathway by blocking factor B binding to C3b, thereby preventing C3 convertase formation .

Neither CG001 nor S77 IgG is referred to as "CP31B Antibody."

Antibody Structure and Function

Search result provides foundational knowledge about antibody architecture, including:

  • Fab fragment: Binds antigens via variable domains.

  • Fc region: Mediates effector functions like complement activation .

No CP31B-related structures or functions are mentioned.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Composition: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
CP31B antibody; At5g50250 antibody; K6A12.11RNA-binding protein CP31B antibody; chloroplastic antibody
Target Names
CP31B
Uniprot No.

Target Background

Function
This antibody is essential for specific RNA editing events within chloroplasts. It also plays a role in stabilizing certain chloroplast mRNAs.
Database Links

KEGG: ath:AT5G50250

STRING: 3702.AT5G50250.1

UniGene: At.46085

Subcellular Location
Plastid, chloroplast.

Q&A

What is the functional significance of anti-C3b antibodies in the complement system?

Anti-C3b antibodies recognize epitopes shared between C3(H2O), C3b, iC3b, and C3c, demonstrating overt functional activity in the complement cascade. These antibodies are associated with low plasmatic C3 levels in patients with certain autoimmune conditions . Functionally, they can increase the activity of the alternative pathway C3 convertase without being C3 nephritic factors, thereby amplifying complement activation. They also disrupt the binding of negative regulators such as Complement Receptor 1 and Factor H, further enhancing complement activity . Their clear functional consequences and association with disease severity highlight their importance in complement-mediated pathologies.

How do anti-C3b antibodies differ from C3 Nephritic factors (C3Nef)?

While both entities affect complement activation, they operate through fundamentally different mechanisms. Anti-C3b antibodies bind directly to C3b or other C3 activation products, whereas C3 Nephritic factors (C3Nef) specifically bind to the C3bBb convertase complex but not to its isolated components C3b and Bb . This distinction is clinically relevant as demonstrated by patients with high titers of anti-C3b antibodies who test negative for C3Nef activity . Moreover, anti-C3b antibodies, sometimes occurring together with antibodies against Factor B, have been detected in patients with Dense Deposit Disease without C3NeF activity, establishing them as distinct immunological entities .

In which clinical conditions are anti-C3b antibodies most commonly observed?

Anti-C3b antibodies have been established in several autoimmune and complement-mediated disorders. They are prominently detected in systemic lupus erythematosus (SLE), particularly in lupus nephritis (LN) where approximately 30-36% of patients test positive . They have also been documented in Crohn's disease, certain nephrotic kidney diseases, dense deposit disease (DDD), C3 glomerulopathy (C3G), and immune complex glomerulonephritis (IC-GN) . Notably, these antibodies are rarely detected in primary biliary cirrhosis or rheumatoid arthritis. In contrast to general SLE, their presence is significantly elevated in patients with LN, suggesting a potential role in kidney-specific autoimmunity .

What structural changes enable antibodies to selectively recognize C3b but not native C3?

The selectivity of antibodies like S77 for C3b over native C3 is structurally explained by conformational changes that occur during the cleavage of C3 to C3b. Crystal structure analysis of the C3b-S77 Fab complex reveals that the cleavage results in numerous structural rearrangements, particularly the repositioning of macroglobulin domain 6, which enables binding of S77 to the adjacent macroglobulin domain 7 . This selective recognition is possible because these epitopes are concealed in the native C3 molecule but become exposed following activation and conversion to C3b . Such molecular understanding provides critical insights for designing therapeutic antibodies that can target only the activated components without affecting the abundant inactive C3 in circulation.

How do anti-C3b antibodies modulate complement convertase formation and function?

Anti-C3b antibodies like S77 can inhibit the alternative pathway of complement activation through multiple mechanisms. Primarily, they block the binding of factor B to C3b, thereby inhibiting the first critical step in the formation of the alternative pathway C3 convertase . Additionally, these antibodies can inhibit C5 binding to C3b, resulting in significantly reduced formation of anaphylatoxins and membrane-attack complexes . This dual inhibitory mechanism confers the ability to both prevent convertase formation and inhibit already formed convertases, explaining their potent inhibition of alternative pathway complement activation in human serum . Interestingly, despite C3b being part of the classical pathway C5 convertase, antibodies like S77 do not interfere with classical pathway activation, possibly because residual binding of C5 to the C4b subunit remains unaffected .

What are the proposed mechanisms for the origin of anti-C3b autoantibodies?

The immunogenetic mechanisms underlying the development of anti-C3b autoantibodies remain incompletely understood, but several hypotheses exist. One possibility involves an immune response to C3b neoepitopes that become exposed during complement activation . Post-translational modifications, such as phosphorylation of C3 at various sites, may also contribute to its immunogenic properties, as elevated levels of phosphorylated C3 have been detected in SLE patients . Another hypothesis suggests that binding epitopes for protective anti-C3b antibodies (which help clear infections) and pathogenic ones (which cause complement overactivation) may be similar. In physiological conditions, complement-activating anti-C3b IgM may assist in pathogen clearance before disappearing, but if they persist, switch to IgG, undergo epitope spreading, and reach high titers, they could become pathogenic, particularly in individuals with autoimmune predisposition . Alternatively, C3 activation within kidney tissue may result in C3b deposition that presents neoepitopes capable of driving anti-C3b IgG production .

What techniques are most effective for generating C3b-specific antibodies?

Phage display technology has proven highly effective for generating antibodies that selectively recognize C3b but not native C3. As demonstrated in the development of antibody S77, the process involves subtractive phage panning to counter-select against phage antibodies that bind to C3 . The methodology includes coating plates with C3b, incubating with antibody phage libraries, washing and eluting bound phage, then amplifying recovered phages in E. coli XL-1 blue cells . Critically, in subsequent selection rounds, the amplified antibody phage should be preincubated with C3 before being added to antigen-coated plates to counter-select against phage antibodies that also bind native C3 . The stringency of washing should be gradually increased with each round, and binding time reduced to enhance specificity . Selected antibodies can then be reformatted to full-length IgGs by cloning the VL and VH regions into appropriate vectors for mammalian cell expression and protein A column purification .

How can the affinity and specificity of anti-C3b antibodies be optimized?

Affinity maturation techniques are essential for optimizing the binding characteristics of C3b-specific antibodies. For instance, with antibody S77, three different complementarity determining region (CDR) combinatorial libraries were created . Selected amino acids in CDRs 1, 2, and 3 of both light and heavy chains were randomized, and high-stringency selection processes were applied to improve both on- and off-rates . After multiple rounds of sorting, phage antibodies displaying higher affinity and retained specificity for C3b were reformatted to full-length IgGs. The optimized S77 IgG contained seven amino acid changes in the CDRs of the heavy chain and two changes in CDR L3 of the light chain, resulting in a 10-fold higher affinity compared to the parent antibody while maintaining its selectivity for C3b over C3 . Validation of binding specificity can be performed using ELISA, with residual binding to C3 at higher concentrations serving as a quality control parameter .

What functional assays are essential for characterizing anti-C3b antibodies?

Several complementary assays are crucial for comprehensive characterization of anti-C3b antibodies:

  • Convertase Formation Assays: These evaluate the antibody's ability to inhibit the binding of factor B to C3b, a critical step in alternative pathway convertase formation .

  • Decay Acceleration Assays: These determine whether antibodies accelerate the decay of already formed convertases .

  • Cofactor Activity Assays: These assess how antibodies affect the cofactor activity of regulators like factor H and CR1 for factor I-mediated proteolytic cleavage of C3b .

  • C5 Binding Assays: These measure the antibody's ability to inhibit C5 binding to C3b, which has implications for terminal pathway activation .

  • C5 Convertase Assays: These evaluate the impact on C5 convertase assembly and function, often using zymosan particles as a platform .

For validating disease relevance, measuring anti-C3b antibody levels in patient cohorts with appropriate controls is essential, as demonstrated in studies of lupus nephritis where anti-C3b antibodies were associated with disease activity and complement consumption .

How do anti-C3b antibodies correlate with disease activity in lupus nephritis?

Anti-C3b antibodies demonstrate significant correlation with lupus nephritis (LN) activity and severity. In one cohort study, 36% of LN patients were positive for anti-C3b antibodies, compared to only 2% of cases with non-renal SLE . This striking difference highlights the particular association of these antibodies with kidney involvement in lupus. The presence of anti-C3b antibodies correlates strongly with plasmatic C3 consumption, indicating enhanced complement activation . In cross-sectional assessments, compared with anti-C1q IgG, anti-C3b IgG was found to be less sensitive but more specific for lupus nephritis . Longitudinal analyses have revealed that rises in anti-C1q antibody levels serve as prognostic markers for LN flare specifically in anti-C3b antibody-positive patients, thus establishing anti-C3b antibodies as useful markers for identifying patients at risk for disease flare . These findings underscore the potential utility of anti-C3b antibody measurements in clinical monitoring and prognostication of lupus nephritis.

How might targeting C3b antibodies provide therapeutic benefit in complement-mediated diseases?

Targeting C3b with antibodies represents a promising therapeutic approach for complement-mediated diseases. By selectively binding to C3b but not native C3, antibodies like S77 can block both the formation and function of alternative pathway convertases without completely shutting down the complement system . This selective inhibition preserves classical pathway function, allowing for continued immune surveillance while dampening excessive alternative pathway activation . The selectivity for C3b over C3 also provides dosing advantages, as these antibodies target only a small portion (approximately 0.5%) of total C3 proteins in serum, reducing the amount needed to achieve therapeutic effects .

What are the key considerations for designing clinical trials evaluating anti-C3b antibody therapeutics?

When designing clinical trials for therapeutic anti-C3b antibodies, several critical considerations must be addressed:

  • Patient Selection: Based on the disease-specific associations of anti-C3b antibodies, trials should focus on conditions where alternative pathway dysregulation is prominent, such as lupus nephritis, C3 glomerulopathy, and other complement-mediated kidney diseases .

  • Biomarker Stratification: Patients should be stratified based on their endogenous anti-C3b antibody status, as this may predict response to therapy. Those with high levels of pathogenic anti-C3b antibodies might represent a subgroup most likely to benefit from C3b-targeting interventions .

  • Outcome Measures: Trials should incorporate both biochemical markers (C3 levels, C3 activation products, alternative pathway activity) and clinical endpoints relevant to the specific disease being studied .

  • Safety Monitoring: While selective targeting of C3b preserves classical pathway function, careful monitoring for infections is essential, particularly given observations of higher infection rates in some patients with anti-C3b antibodies .

  • Comparative Studies: Comparing therapeutic effects in patients with autoimmune diseases versus those with infections who have anti-C3b antibodies may help elucidate different epitope specificities and inform more targeted therapeutic approaches .

Table 1: Prevalence of Anti-C3b Antibodies in Various Clinical Conditions

Clinical ConditionPrevalence of Anti-C3b AntibodiesAssociation with Disease ParametersReference
Lupus Nephritis30-36%Correlation with disease activity and lower plasma C3 levels
SLE without renal involvement2%Limited association with disease parameters
C3G and IC-GN5.7% (8/141 patients)Associated with increased Bb fragment in plasma and higher infection rates
Dense Deposit DiseaseCase reports onlyOften co-occurring with anti-Factor B antibodies, absence of C3Nef activity
Primary Biliary CirrhosisRarely detectedNot established
Rheumatoid ArthritisRarely detectedNot established
Atypical Hemolytic Uremic SyndromeCase reports onlyNot established

Table 2: Functional Effects of Anti-C3b Antibodies in Research Models

Experimental SystemObserved EffectMechanismReference
Purified componentsInhibition of factor B binding to C3bSteric hindrance at binding site
Serum-based assaysInhibition of alternative pathway activationBlocking convertase formation and function
Cell-based assaysReduced C3 fragment deposition on endothelial cellsInhibition of C3 convertase activity
C5 binding assaysInhibition of C5 binding to C3bInterference with C5 recruitment to C3b
Convertase assaysNo effect on classical pathway activationPreserved function of C4b in CP C5 convertase

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