CRRSP20 Antibody

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Description

Definition and Target

The CRRSP20 Antibody is a monoclonal antibody targeting the CRRSP20 protein (UniProt ID: Q9LRL9) in Arabidopsis thaliana. This protein is associated with chloroplast RNA processing, though its exact biological role remains under investigation .

Key attributes:

ParameterValue
Target SpeciesArabidopsis thaliana
Host SpeciesNot explicitly stated (likely rabbit or mouse)
ClonalityMonoclonal
ApplicationsWestern Blot, ELISA, Immunofluorescence
Available Sizes2 mL / 0.1 mL

Applications in Plant Biology

The CRRSP20 Antibody is utilized to:

  1. Investigate chloroplast RNA-binding protein networks.

  2. Study post-transcriptional regulation in plant organelles.

  3. Characterize gene expression profiles in Arabidopsis mutants .

Comparative Context

  • Related Antibodies: CRRSP14, CRRSP16, and CRRSP22 antibodies share structural homology with CRRSP20, suggesting overlapping roles in RNA metabolism .

  • Technical Challenges: As with all antibodies, batch variability and epitope accessibility may affect reproducibility .

Authoritative References

  1. Antibody structure and antigen-binding mechanisms .

  2. Best practices for antibody validation in plant proteomics .

  3. Commercial source data for CRRSP20 .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
CRRSP20 antibody; At3g21933 antibody; MZN24.6 antibody; Putative cysteine-rich repeat secretory protein 20 antibody
Target Names
CRRSP20
Uniprot No.

Target Background

Protein Families
Cysteine-rich repeat secretory protein family
Subcellular Location
Secreted.

Q&A

What are the optimal dilution factors for CRRSP20 Antibody in immunoassay applications?

For CRRSP20 Antibody applications, dilution optimization is essential for balancing sensitivity and specificity. Based on established antibody research methodologies, initial dilution screening should be performed across a logarithmic range (1:100 to 1:10,000) for applications like ELISA, Western blotting, and immunofluorescence . The optimal dilution factor will depend on your specific application:

  • Immunohistochemistry/Immunofluorescence: Start with 1:200 dilution in blocking solution (2% BSA in PBS) and incubate for 1 hour at room temperature

  • Western blotting: 1:1000-1:2000 dilution is typically optimal, with overnight incubation at 4°C

  • ELISA applications: High-sensitivity assays may require dilutions of 1:4000 or higher

When establishing the optimal dilution, always include appropriate positive and negative controls to validate target specificity and minimize background signal . For ultra-sensitive detection applications, significantly higher dilutions (up to 1:4000) may provide improved performance by reducing non-specific binding while maintaining target detection capability .

How should researchers validate the specificity of CRRSP20 Antibody?

Validating CRRSP20 Antibody specificity requires a multi-faceted approach:

  • Western blot analysis: Confirm the antibody detects a protein of the expected molecular weight

  • Immunoprecipitation followed by mass spectrometry: Verify the antibody captures the intended target

  • Knockout/knockdown controls: Compare antibody reactivity in samples with and without the target protein

  • Peptide competition assays: Pre-incubate the antibody with purified antigen to demonstrate specific binding inhibition

  • Cross-reactivity testing: Evaluate binding against related proteins to ensure specificity

For quantitative validation, researchers should perform spike-and-recovery and dilution-linearity experiments using recombinant proteins to demonstrate assay precision and validity . A properly validated antibody should show excellent linearity and recoveries ranging from 85-103% across the working concentration range .

What controls are essential when designing experiments with CRRSP20 Antibody?

Every experiment using CRRSP20 Antibody should include the following controls:

Control TypePurposeImplementation
Positive ControlConfirms antibody functionalityKnown sample expressing target protein
Negative ControlAssesses non-specific bindingSample lacking target protein (knockout/knockdown)
Isotype ControlEvaluates background from antibody classUnrelated antibody of same isotype/host species
Secondary-only ControlMeasures secondary antibody backgroundOmit primary antibody
Blocking Peptide ControlVerifies binding specificityPre-incubate antibody with immunizing peptide

These controls are particularly important when establishing a new experimental system or when troubleshooting unexpected results . Include technical replicates (minimum n=3) for each control condition to ensure statistical validity.

How can CRRSP20 Antibody be optimized for receptor-mediated transcytosis studies?

For researchers studying receptor-mediated transport using CRRSP20 Antibody, optimization requires careful consideration of both binding kinetics and trafficking pathways:

  • Model system selection: Human induced pluripotent stem cells differentiated into brain capillary endothelial-like cells (hiPSC-BECs) offer advantages for studying transcytosis across barriers like the BBB

  • Binding affinity optimization: The affinity between the antibody and target receptor significantly impacts transcytosis efficiency—moderate affinity often yields better transcytosis than ultra-high affinity

  • Valency considerations: Monovalent antibody formats may show different trafficking patterns than bivalent formats—controlled fab-arm exchange (cFAE) can be used to generate and compare both formats

  • Transport experiment design:

    • Use transport chambers with defined volumes (e.g., 1200 μl bottom chamber, 475 μl top chamber)

    • Allow cells to stabilize (3 hours) before adding antibody

    • Spike medium with antibody to achieve final concentration of 10 μg/ml

    • Collect samples at multiple timepoints for kinetic analysis

When analyzing transcytosis efficiency, compare CRRSP20 Antibody performance against established cargo receptors like transferrin receptor (TfR) as a benchmark for transport efficiency .

What methodological approaches can address inconsistent results with CRRSP20 Antibody?

When facing inconsistent results with CRRSP20 Antibody, implement this systematic troubleshooting approach:

  • Antibody validation: Re-confirm antibody specificity via Western blot and immunoprecipitation

  • Sample preparation assessment:

    • For heat-inactivated samples, note that heat inactivation can be detrimental for serological assays, particularly affecting IgM antibody detection

    • Standardize all preparation protocols (fixation times, buffer compositions)

  • Blocking optimization: Test different blocking agents (BSA, normal serum, commercial blockers) at various concentrations (2-5%)

  • Incubation parameters: Systematically vary antibody concentration, incubation time, and temperature

  • Detection system evaluation: Compare different secondary antibodies or detection systems

  • Instrument calibration: Ensure detection instruments are properly calibrated

Document all optimization experiments systematically in a validation matrix to identify parameters that contribute to variability. For particularly sensitive applications, consider using ultra-sensitive detection platforms like Single Molecule Array (Simoa) technology, which offers improved performance for detecting low-abundance targets with minimal sample volume requirements .

How should researchers design CRRSP20 Antibody competition binding assays?

Competition binding assays with CRRSP20 Antibody require careful methodological design:

  • Assay principle establishment: Determine whether you're measuring competition for antigen binding or receptor binding

  • Labeled antibody preparation: Consider direct labeling with fluorophores or enzymes, ensuring labeling doesn't interfere with binding characteristics

  • Competitor titration: Test a wide range of competitor concentrations (at least 7-8 points) spanning 3-4 logs

  • Assay conditions optimization:

    • Buffer composition (ionic strength, pH, detergents)

    • Incubation times and temperatures

    • Order of addition (pre-incubation strategies)

  • Data analysis: Calculate IC50 values and inhibition constants (Ki) using appropriate mathematical models

This methodology enables identification of distinct binding profiles that may correlate with specific functional outcomes or protection mechanisms . The resulting competition profiles can provide insights into epitope specificity and binding characteristics relevant to your research objectives.

How should researchers calculate and interpret sensitivity and specificity for CRRSP20 Antibody assays?

For accurate sensitivity and specificity determination in CRRSP20 Antibody assays:

  • Establish reference populations: Define truly positive and negative samples using gold-standard methods

  • Generate ROC curves: Plot sensitivity vs. 1-specificity across multiple threshold values

  • Calculate Area Under Curve (AUC): AUC values approaching 1.0 indicate excellent discriminative ability

  • Determine optimal cutoff thresholds: Balance sensitivity and specificity based on your application requirements

  • Calculate performance metrics:

    • Sensitivity = True Positives / (True Positives + False Negatives)

    • Specificity = True Negatives / (True Negatives + False Positives)

For enhanced performance, consider multivariate analysis combining multiple antibody isotypes or targets. As demonstrated in advanced antibody research, combining IgA and IgG responses can achieve significantly improved sensitivity and specificity compared to individual assays .

When reporting results, include Positive Predictive Values (PPV) and Negative Predictive Values (NPV) calculated across a range of prevalence values to account for potential variations in target prevalence in different populations :

PrevalencePPV (%)NPV (%)
5%10099.3
10%10098.5
20%10096.9
30%10095.2

What statistical approaches are recommended for analyzing CRRSP20 Antibody binding data?

Robust statistical analysis of CRRSP20 Antibody binding data should follow these methodological principles:

  • Data normalization strategies:

    • Subtract background signal from negative controls

    • Normalize to internal reference standards

    • Consider log-transformation for wide dynamic ranges

  • Statistical tests for group comparisons:

    • For normally distributed data: t-tests (two groups) or ANOVA (multiple groups)

    • For non-parametric data: Mann-Whitney (two groups) or Kruskal-Wallis (multiple groups)

    • For paired samples: Paired t-test or Wilcoxon signed-rank test

  • Correlation analysis:

    • Pearson correlation for linear relationships with normally distributed data

    • Spearman correlation for non-parametric or non-linear relationships

    • Multiple regression for multivariate analysis

  • Reproducibility assessment:

    • Calculate coefficients of variation (CV) for technical and biological replicates

    • Report confidence intervals around measured values

    • Implement Bland-Altman plots for method comparison studies

For time-course experiments, employ repeated measures ANOVA or mixed-effects models to account for within-subject correlations over time . When analyzing complex immunological responses, multivariate approaches may provide superior classification compared to univariate analysis of individual parameters.

How can CRRSP20 Antibody be engineered for enhanced tissue-specific targeting?

Engineering CRRSP20 Antibody for enhanced tissue-specific targeting involves several methodological approaches:

  • Affinity modulation: Strategic mutation of CDR regions to optimize binding kinetics (kon and koff rates) for specific applications

  • Format optimization:

    • Fragment-based approaches (Fab, F(ab')2, scFv)

    • Bispecific antibody design incorporating tissue-specific targeting domains

    • Controlled Fab-arm exchange (cFAE) for generating asymmetric antibodies

  • Target selection considerations: Different receptors show distinct trafficking patterns that influence delivery efficiency:

    • Transferrin receptor (TfR): Efficient for transcytosis across barriers

    • Sortilin: Effective for intracellular delivery to the cell layer

    • Static receptors (CD133, podocalyxin): Less efficient for cargo delivery

When designing bispecific antibodies, consider the affinity balance between arms—the binding strength to the cargo receptor (e.g., TfR) significantly impacts transport efficiency and destination . Iterative optimization through systematic mutagenesis and functional screening is essential for developing antibodies with ideal targeting characteristics.

What methodological approaches enable ultra-sensitive detection of low-abundance targets with CRRSP20 Antibody?

For ultra-sensitive detection using CRRSP20 Antibody, consider implementing these advanced methodological approaches:

  • Single Molecule Array (Simoa) technology:

    • Enables detection at femtomolar concentrations

    • Requires < 1μL sample volume (suitable for finger prick collection)

    • Allows high sample dilution (1:4000) to minimize matrix effects

  • Signal amplification strategies:

    • Enzyme-mediated amplification systems

    • Tyramide signal amplification

    • Poly-HRP conjugation approaches

  • Microfluidic platform integration:

    • Reduced diffusion distances

    • Enhanced kinetics

    • Minimized sample consumption

  • Optimized capture surface preparation:

    • Quantitatively validate target conjugation to bead surfaces

    • Use anti-His tag antibodies for validation

    • Test multiple detector antibodies to optimize performance

For multiplex detection, design assays that simultaneously measure different immunoglobulin isotypes (IgG, IgM, IgA) against multiple targets, achieving a comprehensive profile from a single sample . When developing ultra-sensitive assays, perform spike-and-recovery and dilution-linearity experiments to demonstrate assay precision across the entire working range.

How should researchers design time-course experiments to characterize dynamic responses with CRRSP20 Antibody?

Time-course experiment design for CRRSP20 Antibody requires careful methodological planning:

  • Timepoint selection strategy:

    • Early timepoints (hours): Capture rapid responses (0.5, 1, 2, 4, 8 hours)

    • Intermediate timepoints (days): Track evolving responses (1, 3, 5, 7 days)

    • Late timepoints (weeks): Assess sustained effects (2, 4, 8 weeks)

  • Sample collection and processing standardization:

    • Consistent collection methodology

    • Standardized processing times

    • Uniform storage conditions (-80°C for long-term)

  • Internal controls implementation:

    • Include time-matched control samples

    • Use reference standards at each timepoint

    • Consider spike-in controls for normalization

  • Statistical analysis approaches:

    • Apply time-series analysis methods

    • Utilize area-under-curve calculations

    • Implement mathematical modeling of response kinetics

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