cwf17 Antibody

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Description

Molecular Identity and Functional Role

cwf17 (conserved WD40 repeat protein 17) is a subunit of the spliceosome-associated Cwf complex, which plays a critical role in RNA processing. It contains WD40 repeats, structural motifs facilitating protein-protein or protein-RNA interactions .

Key functions:

  • Participates in spliceosome assembly and catalytic activation during pre-mRNA splicing .

  • Binds RNA non-specifically via electrostatic interactions, unlike sequence-specific RNA-binding proteins .

Table 1: cwf17-Associated Proteins and Complexes

ComponentRole in ComplexExperimental Evidence
Cdc5-TAPCore scaffold proteinCo-purified with cwf17 via TAP
Prp19, Cef1, Snt309Spliceosome regulatory partnersCo-isolated in sucrose gradients
U2ApRNA-binding partnerIdentified in affinity purifications

Table 2: Functional Properties of cwf17

PropertyDetailCitation
RNA bindingNon-sequence-specific; mediated by WD40 domain side surface
Thermal stabilityStable in multiprotein complexes up to 37°C
ConservationOrthologs identified in S. cerevisiae and S. pombe

Research Findings

  • Genetic Studies:

    • Deletion of cwf17 in S. pombe disrupts pre-mRNA splicing, leading to accumulation of unspliced transcripts .

    • Epitope-tagged cwf17 (e.g., HA-tagged) enabled isolation of spliceosomal subcomplexes via tandem affinity purification (TAP) .

  • Structural Insights:

    • The WD40 domain of cwf17 interacts with RNA backbones but lacks sequence specificity, contrasting with Gemin5’s Sm-site recognition .

    • Sucrose gradient centrifugation confirmed cwf17’s presence in high-molecular-weight complexes (>19S) .

Experimental Methods

  • Purification:

    • cwf17-HA complexes were isolated using anti-HA antibodies and protein A/G affinity columns .

    • Eluates resolved via SDS-PAGE and visualized by silver staining .

  • RNA Analysis:

    • Northern blotting revealed splicing defects in cwf17 mutants, validated by primer extension assays .

Clinical and Evolutionary Significance

  • Conservation: cwf17 homologs are critical for splicing across eukaryotes, with functional redundancy observed in yeast models .

  • Research Gaps: No direct clinical associations (e.g., autoimmune or transfusion-related) are documented, unlike unrelated anti-Cw antibodies in the Rh system .

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
cwf17 antibody; SPBC1289.11Pre-mRNA-splicing factor cwf17 antibody; Complexed with cdc5 protein 17 antibody
Target Names
cwf17
Uniprot No.

Target Background

Function
CWF17 antibody plays a crucial role in mRNA splicing. It interacts with cdc5 and other cwf proteins as a component of the spliceosome.
Database Links
Subcellular Location
Nucleus.

Q&A

What is BCMA/TNFRSF17 and why is it significant in research?

BCMA (B-cell maturation antigen), also known as TNFRSF17 (Tumor Necrosis Factor Receptor Superfamily Member 17), is a protein expressed specifically on plasma cells but not on memory B cells, naïve B cells, or hematopoietic stem cells. Its significance lies in its role as a receptor for two agonistic ligands: BAFF and APRIL (a proliferation-inducing ligand), with APRIL showing higher affinity for binding to BCMA than BAFF . This binding interaction is mediated by CD138/syndeclin-1. BCMA activation promotes growth and survival of plasma cells through several critical signaling pathways including NFkappaB, MEK/ERK, AKT, JNK, and p38 . In multiple myeloma (MM), BCMA activation functions to upregulate antiapoptotic proteins including Bcl-2, Bcl-xL, and Mcl-1, which protect malignant cells against therapeutic agents like dexamethasone . Its specific expression pattern makes it an important therapeutic target for MM treatment and a valuable research tool for studying plasma cell biology.

What applications are recommended for BCMA/TNFRSF17 antibodies?

BCMA/TNFRSF17 antibodies can be utilized across multiple experimental platforms. Based on validated applications, researchers can employ these antibodies for: ELISA (enzyme-linked immunosorbent assay), immunocytochemistry/immunofluorescence, immunohistochemistry (including paraffin-embedded tissue sections), and western blot analysis . When utilizing CoraFluor-conjugated antibodies such as the BCMA/TNFRSF17 Antibody [CoraFluorTM 1], additional applications include time-resolved fluorescence resonance energy transfer (TR-FRET) and time-resolved fluorescence (TRF) assays for high-throughput screening platforms . Optimal dilutions for each application should be experimentally determined to ensure reliable results and minimize background signal.

What is the immunogen sequence used for BCMA/TNFRSF17 antibody production?

The BCMA/TNFRSF17 polyclonal antibody is typically raised against a 16 amino acid synthetic peptide mapping at the carboxy terminus of human BCMA. The specific immunogen sequence is PAALSATEIEKSISAR, which is located within the last 50 amino acids of the BCMA protein . This information is crucial for researchers who need to understand potential epitope binding regions, cross-reactivity potential, and compatibility with other detection reagents or antibodies targeting different epitopes of the same protein.

How do CoraFluor-conjugated BCMA/TNFRSF17 antibodies improve detection sensitivity compared to conventional fluorophores?

CoraFluor™ 1 conjugation to BCMA/TNFRSF17 antibodies offers multiple advantages for advanced research applications requiring high sensitivity. As a terbium-based fluorophore, CoraFluor™ 1 has distinct spectral characteristics that enhance detection capabilities compared to conventional fluorophores. It absorbs UV light at approximately 340 nm and emits at multiple wavelengths (approximately 490 nm, 545 nm, 585 nm, and 620 nm) . This unique spectral profile enables several advanced applications:

  • Time-resolved detection significantly reduces background autofluorescence, increasing signal-to-noise ratio

  • Multiple emission peaks allow for multiplexing with various acceptor dyes

  • Long fluorescence lifetime permits TR-FRET applications for studying molecular interactions

These properties make CoraFluor™ 1-conjugated antibodies particularly valuable for developing robust and scalable TR-FRET binding assays, including target engagement studies, ternary complex analysis, protein-protein interaction assessment, and protein quantification .

What are the key methodological considerations when designing BCMA-targeted immunotherapy research?

When designing BCMA-targeted immunotherapy research, multiple methodological considerations are critical:

  • Target expression verification: Use validated BCMA/TNFRSF17 antibodies to confirm and quantify expression levels on target cells versus control populations

  • Therapeutic approach selection: Consider specific advantages and limitations of different BCMA-targeting strategies:

    • Antibody-drug conjugates (ADCs)

    • Chimeric antigen receptor (CAR) T cells

    • Bispecific T cell engagers (BiTEs)

    • Bispecific/trispecific antibodies

  • Resistance mechanisms assessment: Implement methodologies to study:

    • Antigen density modulation

    • Receptor internalization kinetics

    • Downstream signaling pathway alterations

  • Combination therapy design: Consider approaches that increase antigen density or target additional antigens in combination with BCMA

These considerations are particularly relevant as CAR T cell therapy targeting BCMA has demonstrated promising clinical results, but challenges remain regarding efficacy and relapse risk .

How do BAFF and APRIL ligand interactions with BCMA influence experimental design for targeted therapy research?

The differential binding affinities of BAFF and APRIL for BCMA have significant implications for experimental design in targeted therapy research. Since APRIL demonstrates higher affinity for BCMA than BAFF, with binding mediated by CD138/syndeclin-1 , researchers must consider:

  • Competitive binding assessment: Therapeutic antibodies targeting BCMA must be evaluated for their ability to block natural ligand binding, particularly the higher-affinity APRIL interaction

  • Signaling pathway analysis: Experiments should distinguish between APRIL-induced versus BAFF-induced BCMA activation effects on:

    • NFkappaB pathway activation

    • MEK/ERK signaling

    • AKT phosphorylation

    • JNK and p38 activation

  • Syndeclin-1 dependency: Experimental designs should account for the role of CD138/syndeclin-1 in mediating APRIL-BCMA binding

  • Antiapoptotic protein regulation: Therapeutic efficacy assessment should include measurement of changes in Bcl-2, Bcl-xL, and Mcl-1 expression levels following treatment

Understanding these ligand-specific interactions enables more precise targeting strategies and better prediction of potential resistance mechanisms.

What is the optimal sandwich ELISA protocol using BCMA/TNFRSF17 antibody pairs?

When establishing a sandwich ELISA using BCMA/TNFRSF17 antibody pairs, researchers should follow a methodological approach similar to the general matched antibody pair ELISA protocol. The specificity of antibody selection is critical, as each antibody must recognize different, non-overlapping epitopes of BCMA/TNFRSF17 .

Recommended Sandwich ELISA Protocol for BCMA/TNFRSF17 Detection:

  • Plate preparation: Coat microplate wells with capture antibody (typically the non-biotinylated BCMA/TNFRSF17 antibody) diluted in coating buffer. Incubate overnight at 4°C.

  • Blocking: Block remaining protein-binding sites with blocking buffer (typically 1-5% BSA in PBS) for 1-2 hours at room temperature.

  • Sample addition: Add diluted samples and standards to appropriate wells. Incubate for 2 hours at room temperature.

  • Detection antibody: Add biotinylated detection antibody specific for BCMA/TNFRSF17. Incubate for 1 hour at room temperature.

  • Enzyme conjugate: Add streptavidin-HRP conjugate. Incubate for 30 minutes at room temperature.

  • Substrate reaction: Add appropriate substrate (TMB is commonly used). Monitor color development.

  • Termination and measurement: Stop reaction with acid solution and measure absorbance at appropriate wavelength.

Between each step, perform thorough washing (typically 3-5 washes) with wash buffer to remove unbound reagents .

What troubleshooting approaches are recommended for immunocytochemistry using BCMA/TNFRSF17 antibodies?

When performing immunocytochemistry with BCMA/TNFRSF17 antibodies, researchers may encounter several technical challenges. The following methodological troubleshooting approaches are recommended:

  • Weak or no signal:

    • Verify target expression in the cell type being studied

    • Optimize antibody concentration through titration experiments

    • Extend primary antibody incubation time (overnight at 4°C may improve sensitivity)

    • Enhance antigen retrieval methods if necessary

    • Consider signal amplification systems

  • High background:

    • Increase blocking time and concentration (3-5% BSA or serum)

    • Reduce primary and secondary antibody concentrations

    • Add 0.1-0.3% Triton X-100 to washing buffers

    • Extend washing steps (5-6 washes, 5 minutes each)

    • Include additional blocking of endogenous peroxidases if using HRP detection

  • Non-specific staining:

    • Perform isotype control experiments

    • Pre-absorb antibody with peptide immunogen when available

    • Include additional negative controls (secondary antibody only, unrelated primary antibody)

    • Filter secondary antibodies before use

  • CoraFluor™ 1 specific considerations:

    • Protect from light exposure during all steps

    • Store at 4°C in the dark as recommended

    • Do not freeze the conjugated antibody

    • Consider spectral overlaps when multiplexing with other fluorophores

Optimal dilutions of the BCMA/TNFRSF17 antibody should be experimentally determined for each application and cell type .

How can BCMA/TNFRSF17 antibodies be effectively used in flow cytometry for multiple myeloma research?

Flow cytometry using BCMA/TNFRSF17 antibodies is a powerful approach for multiple myeloma research. The following methodological guidelines ensure optimal results:

  • Sample preparation:

    • Freshly isolated bone marrow aspirates should be processed within 24 hours

    • Use gentle cell dissociation protocols to preserve surface antigens

    • Maintain cells at 4°C during processing to minimize receptor internalization

  • Antibody panel design:

    • Include BCMA/TNFRSF17 antibody alongside plasma cell markers (CD138, CD38)

    • Add B-cell lineage markers (CD19, CD45) for differentiation from other B-cell populations

    • Consider including apoptosis markers (Annexin V) for viability assessment

  • Staining protocol optimization:

    • For CoraFluor™ 1 conjugated antibodies, use UV excitation (approximately 340 nm) and collect emissions at appropriate wavelengths (490 nm, 545 nm, 585 nm, and 620 nm)

    • Titrate antibody to determine optimal concentration

    • Include FcR blocking step to prevent non-specific binding

    • Perform compensation controls when using multiple fluorophores

  • Analysis considerations:

    • Gate on CD138+/CD38+ population to identify plasma cells

    • Quantify BCMA expression using mean fluorescence intensity (MFI)

    • Compare expression levels between normal plasma cells and myeloma cells

    • Consider correlation with clinical parameters or treatment response

  • Advanced applications:

    • Time-resolved flow cytometry techniques can leverage the unique properties of CoraFluor™ 1

    • Sorting BCMA-positive cells for downstream molecular or functional analyses

This approach enables quantitative assessment of BCMA expression, which is critical for patient stratification and therapeutic response prediction in multiple myeloma research .

What are the current research gaps in understanding BCMA/TNFRSF17 signaling in normal versus malignant plasma cells?

Despite significant advances in BCMA/TNFRSF17 research, several critical knowledge gaps remain:

  • Differential signaling dynamics:

    • Current research has identified activation of NFkappaB, MEK/ERK, AKT, JNK, and p38 pathways following BCMA activation , but the temporal dynamics and pathway crosstalk in normal versus malignant plasma cells require further investigation

    • The quantitative relationship between receptor density and downstream signaling strength remains poorly understood

  • Microenvironmental influences:

    • How bone marrow niche components modulate BCMA signaling

    • Whether hypoxic conditions alter ligand binding affinities or downstream pathway activation

  • Epigenetic regulation:

    • Mechanisms controlling BCMA expression during plasma cell differentiation

    • Epigenetic changes affecting BCMA expression following therapeutic pressure

  • Resistance mechanisms:

    • Molecular basis for BCMA downregulation after targeted therapy

    • Alternative survival pathways activated upon BCMA blockade

    • Role of soluble BCMA in therapy resistance

These knowledge gaps represent important opportunities for researchers utilizing BCMA/TNFRSF17 antibodies to advance understanding of plasma cell biology and improve therapeutic approaches.

How do experimental models compare in evaluating BCMA-targeted therapeutic approaches?

Various experimental models offer distinct advantages and limitations for evaluating BCMA-targeted therapies:

Experimental ModelKey AdvantagesLimitationsRecommended Applications
Cell Lines (MM.1S, RPMI-8226, U266)Ease of manipulation, reproducibility, amenable to high-throughput screeningLimited heterogeneity, lack microenvironmentInitial screening, mechanism studies, signaling pathway analysis
Primary Patient SamplesClinical relevance, genetic diversity, natural expression levelsLimited availability, short viability ex vivoValidation studies, biomarker identification, patient-specific response prediction
3D Organoid CulturesIncorporates microenvironmental factors, maintains cellular architectureTechnical complexity, variabilityDrug penetration studies, microenvironment interaction analysis
Xenograft Mouse ModelsIn vivo growth dynamics, systemic effectsImmunocompromised background limits immune component studiesPharmacokinetics, tumor growth inhibition, survival studies
Humanized Mouse ModelsIncludes human immune components, allows evaluation of immunotherapiesExpensive, technical complexity, incomplete immune repertoireCAR T-cell studies, BiTE evaluation, immune response assessment
Syngeneic Transgenic ModelsComplete immune system, natural disease progressionSpecies differences in BCMA structure/functionImmunomodulatory combination strategies, long-term efficacy studies

Researchers should select models based on specific experimental questions, recognizing that a multi-model approach often provides the most comprehensive evaluation of BCMA-targeted therapeutics .

What considerations are important when developing validation protocols for new BCMA/TNFRSF17 antibodies?

Developing rigorous validation protocols for new BCMA/TNFRSF17 antibodies is essential for ensuring experimental reproducibility. Important methodological considerations include:

  • Epitope characterization:

    • Determine if the antibody recognizes the same immunogen sequence (PAALSATEIEKSISAR) as existing antibodies

    • Map the specific binding region using techniques such as epitope mapping or competition assays

    • Assess potential overlap with natural ligand binding sites (BAFF/APRIL)

  • Specificity validation:

    • Western blot analysis to confirm molecular weight specificity

    • Positive controls using cells known to express BCMA (plasma cells, multiple myeloma cell lines)

    • Negative controls using BCMA-negative cell lines (naive B cells, non-B lineage cells)

    • Knockdown/knockout validation to confirm specificity

    • Peptide competition assays using the immunizing peptide

  • Performance across applications:

    • Systematic testing across multiple applications (ELISA, Western blot, immunohistochemistry, flow cytometry)

    • Comparison with benchmark antibodies previously validated

    • Cross-platform consistency assessment

    • Batch-to-batch reproducibility testing

  • Quantitative parameters documentation:

    • Sensitivity determination (limit of detection across applications)

    • Dynamic range characterization

    • Signal-to-noise ratio quantification

    • Stability assessment under various storage conditions

  • Conjugate-specific validation (for CoraFluor™ 1):

    • Confirm retention of specificity post-conjugation

    • Determine optimal excitation/emission parameters

    • Assess potential fluorescence quenching effects

    • Evaluate performance in time-resolved applications

Thorough validation using these methodological approaches ensures reliable antibody performance in research applications and supports experimental reproducibility across laboratories.

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