DAAT Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (Made-to-order)
Synonyms
DAAT antibody; BCAL3 antibody; At5g57850 antibody; MTI20.10D-amino-acid transaminase antibody; chloroplastic antibody; EC 2.6.1.21 antibody; EC 4.1.3.38 antibody; Aminodeoxychorismate lyase antibody; AtADCL antibody; Branched-chain-amino-acid aminotransferase-like protein 3 antibody
Target Names
DAAT
Uniprot No.

Target Background

Function
This antibody targets a D-amino acid aminotransferase (DAAT) exhibiting activity with D-Aspartate (D-Asp) and D-Alanine (D-Ala) as amino donors, utilizing 2-oxoglutarate as an amino acceptor. The enzyme also accepts D-Methionine (D-Met), D-Tyrosine (D-Tyr), D-Phenylalanine (D-Phe), D-Glutamine (D-Gln), D-Tryptophan (D-Trp), and D-Asparagine (D-Asn) as substrates; however, it shows no activity with L-Aspartate (L-Asp), L-Alanine (L-Ala), L-Leucine (L-Leu), L-Isoleucine (L-Ile), or L-Valine (L-Val). DAAT also catalyzes the reverse reaction, transferring an amino group from D-Glutamate (D-Glu) to pyruvate or oxaloacetate to produce D-Alanine or D-Aspartate, respectively. Furthermore, it plays a role in folate biosynthesis, functioning as an aminodeoxychorismate lyase that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoic acid (PABA). (PubMed:15500462)
Gene References Into Functions
1. The full-length Arabidopsis ADC lyase polypeptide, when translocated into isolated pea chloroplasts, directed the passenger protein to Arabidopsis chloroplasts. [ADC lyase] PMID: 15500462
Database Links

KEGG: ath:AT5G57850

STRING: 3702.AT5G57850.1

UniGene: At.7653

Protein Families
Class-IV pyridoxal-phosphate-dependent aminotransferase family
Subcellular Location
Plastid, chloroplast.

Q&A

What is the Direct Antiglobulin Test (DAT) and how is it applied in research?

The Direct Antiglobulin Test (DAT) is a serologic test designed to detect red blood cells (RBCs) that are coated with complement and/or antibodies in vivo (within the body). In research settings, DAT serves as a critical tool for investigating immune-mediated hemolytic conditions . The test involves washing a patient's red cell sample to remove unbound antibody and complement, adding anti-human globulin (AHG), centrifuging briefly, and examining for agglutination .

Research applications of DAT extend beyond clinical diagnostics to include:

  • Investigation of antibody-mediated mechanisms in various disease models

  • Evaluation of immune responses to experimental therapeutics

  • Characterization of novel autoimmune phenomena

  • Validation of antibody specificity in immunohematology research

It's important to note that DAT results must be interpreted within a broader experimental context, as positive results do not necessarily indicate pathology and can occur in approximately 1:1000 to 1:14,000 healthy blood donors .

What are the primary research scenarios where DAT antibody testing is essential?

DAT antibody testing plays a crucial role in several research scenarios:

  • Transfusion reaction studies: DAT can identify immune responses to recently transfused blood products, providing evidence of antibody-coated RBCs within 7-10 days of primary exposure or 1-2 days of secondary exposure .

  • Hemolytic disease research: Particularly in studies of hemolytic disease of the fetus and newborn (HDFN), DAT helps characterize maternal antibody binding to fetal RBCs .

  • Autoimmune hemolytic anemia investigations: DAT facilitates the characterization of autoantibodies in warm and cold autoimmune hemolytic anemias .

  • Drug-induced immune hemolysis research: DAT helps identify and characterize drug-dependent antibodies in experimental models .

  • Antibody characterization studies: DAT can be incorporated into broader antibody validation protocols to assess in vivo binding capacity .

How should researchers distinguish between clinically significant and insignificant positive DAT results?

Distinguishing between clinically significant and insignificant positive DAT results requires a multifaceted approach:

  • Correlation with hemolysis markers: Researchers should measure hemoglobin levels, reticulocyte counts, haptoglobin, and bilirubin to determine if positive DAT results correlate with actual hemolysis .

  • Antibody characterization: Further characterization of the antibodies detected (class, subclass, thermal amplitude) helps determine potential pathogenicity .

  • Eluate studies: Performing elution techniques to remove and identify bound antibodies provides critical information about antibody specificity .

  • Control comparisons: Including appropriate controls (healthy subjects, disease-matched non-hemolytic controls) helps establish baseline positivity rates .

A large percentage of individuals with positive DAT results have no clinical problems, emphasizing the importance of comprehensive experimental design rather than relying on DAT alone .

What are the fundamental limitations of DAT in antibody research?

Researchers should be aware of several fundamental limitations when using DAT in antibody research:

  • Sensitivity thresholds: DAT may not detect low levels of bound antibodies or complement, with most conventional tube techniques requiring approximately 100-500 IgG molecules per red cell for detection .

  • Specificity challenges: DAT positivity is not specific for any single condition and requires additional testing for proper interpretation .

  • Technical variables: Variations in washing techniques, reagent quality, and incubation conditions can significantly affect test results .

  • False positives/negatives: Improper sample handling, certain medications, and high plasma protein levels can lead to false results that confound research findings .

  • Limited information on antibody function: While DAT detects binding, it provides limited information about the functional consequences of antibody attachment to cells .

How can computational approaches enhance DAT antibody characterization and validation?

Recent advances in computational and machine learning sciences have significantly impacted antibody discovery and characterization processes relevant to DAT research:

  • Developability profiling: Computational tools can now analyze antibody sequences to predict physicochemical properties relevant for manufacturing and clinical success. This approach helps researchers prioritize antibodies with optimal characteristics for further DAT-based validation .

  • Structural modeling: Programs like SAAINT-parser enable rapid and accurate extraction of antibody structural information from protein databases. This facilitates better understanding of antibody-antigen interactions that may be detected through DAT .

  • Dynamic antibody design: Computational platforms like Biolojic Design's enable the creation of antibodies programmed to react differently under varying biological conditions, allowing for more sophisticated experimental designs when using DAT as a validation tool .

  • Epitope mapping: In silico approaches can predict antibody binding sites, helping researchers interpret DAT results by understanding the specific epitopes targeted by detected antibodies .

The integration of these computational approaches with traditional DAT methods represents a shift toward what some researchers describe as "third generation" (in silico) antibody discovery and characterization methods, complementing traditional in vivo and in vitro approaches .

What methodologies should researchers employ to characterize antibodies detected by DAT?

Comprehensive antibody characterization following DAT detection should include:

Characterization MethodPurposeTechnical Considerations
Antibody elutionRecover bound antibodies for further testingSelect elution method based on suspected antibody class (acid, heat, organic solvents)
Isotype determinationIdentify antibody class and subclassUse monospecific antisera against IgG, IgM, IgA, and complement components
Thermal amplitude testingDetermine optimal reactivity temperatureTest at various temperatures (4°C, 22°C, 37°C)
Adsorption studiesRemove autoantibodies to detect underlying alloantibodiesUse autologous or allogeneic cells as appropriate
Specificity testingIdentify target antigen(s)Panel cells with known antigenic profiles
Titration studiesQuantify antibody strengthSerial dilutions of eluate or serum
Western blottingConfirm target protein specificityUse knockout cell lines as controls

Research by YCharOS group has demonstrated that using knockout (KO) cell lines provides superior specificity verification compared to other controls, particularly for Western blots and immunofluorescence imaging .

How should researchers design controls to minimize false interpretations in DAT-based studies?

Designing appropriate controls is critical for accurate interpretation of DAT results in research:

Alarmingly, research by the YCharOS group revealed that approximately 12 publications per protein target included data from antibodies that failed to recognize their supposed target proteins . This emphasizes the critical need for rigorous controls in DAT-based studies.

What are the latest advancements in enhancing DAT sensitivity for detecting low-level antibody binding?

Recent technological advancements have improved DAT sensitivity for detecting low-level antibody binding:

  • Column agglutination technology (CAT): Provides greater sensitivity than traditional tube methods by using a gel matrix that traps agglutinated RBCs while allowing unagglutinated cells to pass through.

  • Solid-phase red cell adherence assays (SPRCA): Offer increased sensitivity by immobilizing antibodies or red cells on solid surfaces and detecting binding through secondary indicators.

  • Flow cytometry: Can detect as few as 30-40 IgG molecules per red cell, significantly lower than the 100-500 molecules required for conventional tube techniques.

  • Enzyme-linked antiglobulin tests: Combine ELISA principles with DAT to enhance detection of bound antibodies.

  • Polyspecific vs. monospecific reagents: Using monospecific reagents against specific immunoglobulin classes or complement components increases analytical specificity.

These advanced techniques are particularly valuable in research settings where detection of subtle differences in antibody binding may have significant experimental implications.

How does antibody characterization impact reproducibility in biomedical research using DAT?

The antibody characterization crisis has significant implications for research reproducibility when using DAT:

Inadequate antibody characterization has been estimated to result in financial losses of $0.4–1.8 billion per year in the United States alone due to irreproducible research . To address this issue in DAT-dependent research, investigators should:

What sample preparation factors influence DAT results in research settings?

Sample preparation can significantly affect DAT results, with several critical factors to consider:

  • Timing of collection: Samples should be processed promptly, as prolonged storage can lead to spontaneous complement activation or elution of bound antibodies.

  • Anticoagulant selection: EDTA is preferred as it prevents complement activation during storage, while citrate or heparin may alter antibody binding characteristics.

  • Washing protocols: Inadequate washing can lead to false positives due to residual plasma proteins, while excessive washing may remove weakly bound antibodies.

  • Sample temperature: Maintenance of appropriate temperature during processing is crucial, especially for cold-reactive antibodies that may elute at higher temperatures.

  • Cell concentration: Standardized cell suspensions (3-5%) provide optimal sensitivity and reproducibility.

  • Pre-analytical variables: Recent transfusions, medications, or sample hemolysis can all interfere with accurate DAT interpretation.

Standardization of these pre-analytical variables is essential for generating reliable and reproducible research data.

How should researchers interpret contradictory DAT results across different methodologies?

When faced with contradictory DAT results using different methodologies, researchers should implement a systematic approach:

  • Compare method sensitivities: Different techniques have varying detection thresholds; gel cards typically detect lower antibody levels than tube methods.

  • Consider antibody characteristics: Some methods may better detect certain antibody classes or complement components than others.

  • Evaluate technical variables: Differences in centrifugation force, incubation time, or reagent potency can affect outcomes.

  • Implement consensus testing: Use multiple methods and establish criteria for considering a result positive (e.g., positivity in at least two independent techniques).

  • Correlate with functional assays: Complement hemolytic assays or monocyte monolayer assays can determine if detected antibodies are functionally significant.

  • Employ statistical approaches: When working with large sample sets, statistical methods can help determine the most reliable technique for specific research questions.

When publishing research involving DAT, transparently reporting all methodologies and any discrepancies between them is essential for scientific integrity.

What quality control measures are essential for maintaining DAT reliability in longitudinal studies?

Longitudinal studies present unique challenges for maintaining DAT reliability:

  • Reference materials: Inclusion of consistently positive and negative control samples in each test run.

  • Reagent lot testing: Validation of new reagent lots against previous lots before implementation.

  • Instrument calibration: Regular calibration of centrifuges, incubators, and automated systems.

  • Proficiency testing: Participation in external quality assessment programs to verify testing accuracy.

  • Staff competency: Regular assessment of technician competency through blind sample testing.

  • Environmental monitoring: Control of temperature, humidity, and other environmental factors that may affect test performance.

  • Trend analysis: Statistical monitoring of positive rates and strength of reactions to detect shifts in test performance over time.

These measures are particularly important in multi-year studies where subtle changes in methodology might otherwise introduce bias or variability.

How can researchers effectively combine DAT with other antibody characterization techniques?

An integrated approach to antibody characterization that incorporates DAT with complementary techniques yields the most comprehensive understanding:

  • Sequential validation workflow: Begin with DAT to detect cell-bound antibodies, then proceed to elution, followed by specificity testing of the eluate.

  • Parallel testing strategies: Simultaneously employ DAT alongside techniques like flow cytometry or enzyme immunoassays for cross-validation.

  • Orthogonal method selection: Choose methods that provide different types of information (binding vs. functional effects, qualitative vs. quantitative data).

  • Biophysical characterization: Supplement DAT with techniques like surface plasmon resonance or isothermal titration calorimetry to determine binding kinetics and affinity.

  • Imaging correlation: Combine DAT with microscopy techniques to visualize antibody localization on cell surfaces.

  • Molecular analyses: Integrate DAT findings with genetic studies to correlate antibody binding with relevant genotypes.

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