DAL5 Antibody

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Description

DLGAP5 Antibody Characteristics

DLGAP5 antibodies target the human DLGAP5 protein, which associates with postsynaptic density proteins and plays roles in synaptic plasticity and cancer progression. Key features include:

PropertyDetails
Target ProteinDLGAP5 (AA 547-846, N-Term, C-Term, or specific epitopes)
ReactivityHuman, Mouse (varies by clone)
ApplicationsWestern Blot (WB), Immunofluorescence (IF), IHC, ELISA
Host SpeciesRabbit (polyclonal)
ConjugationUnconjugated or conjugated with markers (e.g., RB15030)

Research Applications

DLGAP5 antibodies are utilized in:

  • Cancer Research: DLGAP5 overexpression correlates with tumor proliferation in glioblastoma and colorectal cancer.

  • Neuroscience: Studying synaptic organization in neurological disorders.

  • Diagnostics: Potential biomarker for malignancies (e.g., elevated DLGAP5 levels in serum) .

Key Findings from Studies

  • WB Validation: Antibodies targeting AA 228-258 or AA 547-846 show specificity in detecting DLGAP5 in human cell lysates .

  • Immunohistochemistry: Strong nuclear/cytoplasmic staining in brain and cancer tissues .

  • Functional Studies: DLGAP5 knockdown reduces cancer cell viability, suggesting therapeutic targeting potential.

Potential Confounds and Clarifications

  • Nomenclature: Yeast DAL5 and human DLGAP5 are distinct entities; antibodies labeled "DAL5" may refer to DLGAP5 due to typographical or database errors.

  • Species Specificity: DLGAP5 antibodies are validated for humans and mice, not yeast .

Future Directions

  • Therapeutic Development: Explore DLGAP5 inhibitors for oncology.

  • Biomarker Validation: Large-scale clinical studies to confirm diagnostic utility.

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
DAL5 antibody; UREP1 antibody; YJR152W antibody; J2230Allantoate permease antibody
Target Names
DAL5
Uniprot No.

Target Background

Function
DAL5 Antibody is a component of the allantoate transport system.
Gene References Into Functions
  1. Studies have shown that at least one, and potentially two, additional cis-acting elements (UAS(B) and UAS(A)) are required for full DAL5 expression. PMID: 15381120
  2. These investigations highlight the complementary activities of two dipeptide transport systems, each operating under distinct regulatory controls, in common laboratory yeast strains. PMID: 17693598
Database Links

KEGG: sce:YJR152W

STRING: 4932.YJR152W

Protein Families
Major facilitator superfamily, Allantoate permease family
Subcellular Location
Membrane; Multi-pass membrane protein.

Q&A

What is the anti-MDA5 antibody and what is its significance in autoimmune disease research?

Anti-MDA5 antibodies target melanoma differentiation-associated gene 5 protein and represent important biomarkers in idiopathic inflammatory myopathies (IIMs). These antibodies are particularly significant because they correlate strongly with dermatomyositis (DM), especially clinically amyopathic dermatomyositis (CADM), but not with polymyositis (PM) . The presence of these antibodies in serum serves as both a diagnostic marker and a prognostic indicator for patients with IIMs, helping researchers differentiate between various myositis subtypes and predict clinical outcomes .

How specific is the anti-MDA5 antibody for dermatomyositis compared to other autoimmune conditions?

Meta-analysis data demonstrates that anti-MDA5 antibodies exhibit exceptional specificity for dermatomyositis. When comparing DM patients with healthy controls, studies show a significant association (OR = 13.64, 95% CI: 4.63–40.21, P < 0.001) . The antibody shows even stronger association with CADM (OR = 44.03, 95% CI: 14.80–131.01, P < 0.001) compared to classic DM (OR = 6.41, 95% CI: 1.92–21.38, P = 0.003) . Importantly, anti-MDA5 antibodies were not detected in PM patients, confirming their high specificity for DM subtypes .

What are the optimal laboratory methods for detecting anti-MDA5 antibodies in research settings?

Research indicates that different detection methods yield varying sensitivity and specificity profiles for anti-MDA5 antibodies:

Detection MethodDiseaseSensitivity (95% CI)Specificity (95% CI)AUC Value
ELISADM0.18 (0.14–0.23)1.00 (0.97–1.00)0.8589
ImmunoprecipitationDM0.17 (0.13–0.22)1.00 (0.96–1.00)0.8121
ELISACADM0.46 (0.38–0.56)1.00 (0.97–1.00)0.9301
ImmunoprecipitationCADM0.62 (0.52–0.70)1.00 (0.97–1.00)0.9381

For CADM diagnosis, immunoprecipitation offers superior sensitivity while maintaining perfect specificity, making it the preferred method for research focused on this subtype . For general DM research, both methods show comparable performance, though ELISA may be more practical for high-throughput studies.

How can researchers address conflicting results when detecting anti-MDA5 antibodies across different studies?

Conflicting results in anti-MDA5 antibody detection are a documented challenge in the literature. For example, Sato et al. reported associations between anti-MDA5 antibodies and IIMs, while Bodoki et al. found none of their IIM patients positive for these antibodies . To address such discrepancies, researchers should:

  • Consider methodological variations: Different detection techniques (ELISA, immunoprecipitation, immunoblot) show varying sensitivities

  • Account for population differences: Geographic and ethnic variations may influence antibody prevalence

  • Apply standardized criteria: Use established diagnostic criteria for patient classification (e.g., Bohan and Peter criteria for DM/PM or Sontheimer/Sato criteria for CADM)

  • Conduct meta-analyses: Pooling data from multiple studies can provide more reliable estimates of associations

  • Report detailed methodological procedures to facilitate comparison across studies

What is the prognostic value of anti-MDA5 antibodies in dermatomyositis research?

Anti-MDA5 antibodies have significant prognostic implications for DM patients:

This prognostic data highlights the importance of anti-MDA5 antibody testing in clinical research protocols studying DM outcomes and therapeutic interventions.

How can researchers effectively incorporate anti-MDA5 antibody testing in clinical trial design for dermatomyositis therapies?

When designing clinical trials for DM therapies, researchers should consider:

What approaches can researchers use to develop novel antibodies targeting specific epitopes?

Current research demonstrates several sophisticated approaches for rational antibody design:

  • Complementary peptide identification: Analyzing interactions between amino acid sequences in the Protein Data Bank (PDB) to identify potential binding partners for target sequences

  • Computational pipelines: Implementing physics- and AI-based methods for generating, assessing, and validating antibody candidates against diverse epitopes

  • Grafting technique: Sequence-based design of complementary peptides targeting selected disordered epitopes followed by grafting onto antibody scaffolds

  • Few-shot experimental screening: Using efficient screening methodologies to evaluate computationally designed antibody candidates with minimal experimental testing

  • Landscape traversal: Identifying highly sequence-dissimilar antibodies that retain binding to target epitopes, enabling greater intellectual property potential

These approaches are particularly valuable for targeting weakly immunogenic epitopes not readily amenable to traditional antibody production techniques .

How can computational methods improve antibody design for targeting specific epitopes?

Computational approaches offer significant advantages for antibody design research:

  • Epitope-specific targeting: Enable the rational design of antibodies that bind virtually any chosen disordered epitope in a protein

  • Binding recovery: Research demonstrates that up to 54% of computationally designed antibodies can gain binding affinity to new viral subvariants, effectively rescuing binding from escape mutations

  • Developability optimization: Computational methods can improve antibody developability characteristics while maintaining desired binding properties

  • Structural validation: In silico methods predict structural compatibility, which can be verified by experimental techniques such as cryo-EM visualization of designed antibody-antigen complexes

  • Reduced experimental burden: Combined AI and physics-based computational methods improve productivity and reduce the need for large-scale screening to produce initial binders

How should researchers interpret the diagnostic performance metrics of anti-MDA5 antibody tests?

Proper interpretation of diagnostic metrics requires understanding several key considerations:

  • Sensitivity vs. specificity trade-offs: Anti-MDA5 antibodies consistently show perfect or near-perfect specificity (1.00) but variable sensitivity depending on detection method and disease subtype

  • Clinical context matters: The high AUC value for CADM diagnosis (0.9381 with immunoprecipitation) indicates excellent diagnostic performance specifically for this subtype, whereas the lower AUC for general DM (0.8121) suggests more limited utility as a general DM biomarker

  • Prevalence considerations: Low sensitivity values (0.17-0.62) indicate that anti-MDA5 antibodies, while highly specific when positive, will miss a substantial portion of DM cases

  • Confirmation requirements: Given the perfect specificity but limited sensitivity, positive results are highly trustworthy, but negative results do not rule out disease

  • Comparative analysis: Anti-MDA5 antibodies provide substantially higher diagnostic value for CADM than for classic DM, which should inform their application in research protocols

What statistical approaches are most appropriate for analyzing anti-MDA5 antibody data in clinical research?

For robust statistical analysis of anti-MDA5 antibody data, researchers should consider:

  • Meta-analytical techniques: For synthesizing evidence across studies with heterogeneous results (as performed in the included meta-analysis that pooled data from multiple studies)

  • Stratified analysis: Performing subgroup analyses based on detection method (ELISA, immunoprecipitation, immunoblot) and disease classification (classic DM vs. CADM)

  • Survival analysis: Using Kaplan-Meier curves and Cox proportional hazards models to assess the prognostic significance of anti-MDA5 antibodies on mortality outcomes

  • Diagnostic test evaluation: Calculating sensitivity, specificity, and area under the ROC curve (AUC) to assess diagnostic performance

  • Regression models: Implementing multivariate models to control for confounding factors when assessing the independent association between anti-MDA5 positivity and clinical outcomes

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