DAR7 Antibody

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Description

Anti-RAB7 Antibodies

RAB7 is a small GTPase critical for endosomal trafficking and lysosomal maturation. The monoclonal antibody [EPR7589] (ab137029) is a well-characterized reagent for studying RAB7 in human and mouse systems .

Key Features of ab137029

  • Host species: Rabbit

  • Applications: Western blot (WB), immunohistochemistry (IHC), immunofluorescence (IF), flow cytometry

  • Specificity: Validated using RAB7A knockout cell lines (e.g., HeLa, HAP1) .

  • Observed molecular weight: ~23 kDa in WB .

Experimental Validation Data

Cell LineApplicationDilutionResult (Band/Staining)Validation Method
Wild-type HeLaWB1:100023 kDa bandKO comparison
NIH/3T3 (mouse)IF1:250Cytoplasmic stainingCo-staining with α-tubulin
Human kidney (IHC)IHC1:50Positive granular signalMulti-tissue TMA validation

This antibody has been cited in 140+ publications, underscoring its reliability .

Anti-TDRD7 Antibodies

TDRD7 is a scaffold protein involved in mRNA transport and cytoskeletal regulation. The polyclonal antibody PA5-70066 is a key tool for studying TDRD7 .

Key Features of PA5-70066

  • Host species: Rabbit

  • Applications: WB, immunoprecipitation (IP), immunocytochemistry (ICC)

  • Specificity: Validated against recombinant 6His-tagged TDRD7 fragments and endogenous protein in rodent models .

  • Observed molecular weight: ~120 kDa (species-dependent) .

Experimental Validation Data

AssaySample TypeResultValidation Method
Western blotRat testis lysate~120 kDa bandRecombinant protein comparison
ImmunocytochemistryNIH/3T3 cellsCytoplasmic and nuclear punctaKO validation (unpublished)
ImmunoprecipitationHEK293 lysateCo-precipitation with PIWIL1Interaction studies

PA5-70066 recognizes TDRD7 across multiple species, including humans, mice, and rats .

Drug-to-Antibody Ratio (DAR) in Antibody-Drug Conjugates (ADCs)

While unrelated to "DAR7," DAR is a critical parameter in ADC design. For example:

  • ENHERTU® (trastuzumab deruxtecan): DAR ~8 .

  • Datopotamab deruxtecan: DAR 7, optimized for therapeutic window .

DAR Measurement Workflows

MethodPlatformApplicationReference
Intact mass analysisZenoTOF 7600 MS + Biologics ExplorerHigh-resolution DAR quantification
Pharmacokinetic modelingMulti-compartmental analysisIn vivo payload release kinetics

Antibody Validation Best Practices

Recent advancements emphasize CRISPR/Cas9 knockout validation and multi-application testing to ensure specificity . For example:

  • C9ORF72 antibodies: Misidentification in prior studies due to inadequate validation .

Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
14-16 week lead time (made-to-order)
Synonyms
DAR7 antibody; At5g66610 antibody; K1F13.29Protein DA1-related 7 antibody
Target Names
DAR7
Uniprot No.

Target Background

Function
The DAR7 antibody targets a ubiquitin receptor, likely involved in the regulation of developmental processes.
Database Links

KEGG: ath:AT5G66610

STRING: 3702.AT5G66610.2

UniGene: At.28860

Q&A

What Is the Significance of a DAR7 in Antibody-Drug Conjugates?

The drug-to-antibody ratio (DAR) represents the average number of cytotoxic drug molecules conjugated to each antibody. A DAR of approximately 7 indicates a high drug loading strategy, which can significantly impact the therapeutic index of the ADC. DAR7 antibodies typically demonstrate enhanced cytotoxicity due to the increased payload delivery capability per antibody molecule, potentially enabling greater tumor killing efficiency at lower antibody concentrations .

Analysis of clinical-grade IMMU-132 (an ADC utilizing the humanized RS7 antibody) revealed a consistent DAR average of 7.60 ± 0.03 across five different production lots, demonstrating the feasibility of maintaining high and reproducible drug loading in manufacturing conditions . This high DAR approach represents a departure from earlier ADC paradigms that typically targeted lower DARs due to concerns about aggregation and rapid clearance.

How Is DAR Determined for Antibody-Drug Conjugates?

Researchers employ multiple complementary analytical methods to accurately determine the DAR value:

  • Hydrophobic Interaction HPLC (HIC-HPLC): This technique separates ADC species based on their hydrophobicity, which increases with higher drug loading. For IMMU-132, HIC-HPLC resolved three peaks representing species with DARs of 6, 7, and 8, with the greatest fraction comprising a DAR of 8 .

  • Liquid Chromatography-Mass Spectrometry (LC-MS): This confirmatory method provides accurate mass measurements of the intact ADC and its various drug-loaded species. LC-MS analysis of IMMU-132 verified that >99% of the available sulfhydryl groups were coupled with the CL2A linker (with or without SN-38) .

  • Intact Protein Analysis Workflow: Modern high-resolution mass spectrometry platforms, such as the ZenoTOF 7600 system coupled with automated protein deconvolution software, enable rapid and accurate DAR determination of both glycosylated and deglycosylated ADCs .

What Are the Key Quality Attributes for DAR7 Antibodies?

When developing and characterizing DAR7 antibodies, researchers should monitor several critical quality attributes:

  • DAR Consistency: For reproducible efficacy and safety, the DAR should remain within defined specification limits. For example, some ADC development programs target a DAR range of 3.4-4.4, with 3.9 as the ideal target .

  • Conjugation Site Specificity: Researchers must verify that drug conjugation occurs at the intended amino acid residues, typically through peptide mapping and LC-MS/MS analysis.

  • Binding Affinity Retention: High drug loading should not compromise the antibody's ability to bind its target antigen. Comparative binding studies between the unconjugated antibody and the ADC are essential (e.g., for IMMU-132, the KD values were 0.564 ± 0.055 nM and 0.658 ± 0.140 nM for hRS7 IgG and IMMU-132, respectively) .

  • Internalization Efficiency: The ADC must retain rapid internalization kinetics for effective payload delivery, particularly for DAR7 antibodies where each internalization event delivers more cytotoxic molecules.

How Does DAR7 Compare to Lower DAR Values in Clinical Applications?

DAR7 antibodies offer distinct advantages and challenges compared to lower-DAR alternatives:

DAR RangeAdvantagesChallenges
Low (2-4)- Better pharmacokinetic profile
- Reduced aggregation
- Typically more stable in circulation
- Lower payload delivery per antibody
- May require higher antibody doses
Medium (4-6)- Balanced approach
- Good compromise between payload delivery and PK
- Intermediate heterogeneity
- May have batch-to-batch variation
High (7-8)- Maximum payload delivery per antibody
- Potentially higher efficacy against resistant tumors
- May allow lower antibody doses
- Increased hydrophobicity
- Potential for faster clearance
- Greater risk of aggregation

Despite theoretical concerns about stability and clearance, high-DAR ADCs like IMMU-132 (DAR ~7.6) have demonstrated promising clinical activity, suggesting that optimized linker chemistry and conjugation strategies can overcome traditional limitations of high drug loading .

What Methodological Approaches Can Address DAR Heterogeneity in DAR7 Antibodies?

DAR heterogeneity presents a significant challenge for ADC development, affecting both efficacy and safety profiles. For DAR7 antibodies, achieving homogeneity is particularly challenging due to the high number of conjugation sites required. Several innovative approaches can address this challenge:

  • Site-Specific Conjugation Technologies:

    • Engineered cysteine residues (ThioMabs) at defined positions

    • Incorporation of non-natural amino acids with unique reactive handles

    • Enzymatic approaches (transglutaminase, sortase) for site-specific conjugation

  • Chemical Control Strategies:

    • Temperature and pH optimization during conjugation reactions

    • Sequential controlled reduction-conjugation protocols

    • Use of steric hindrance to direct conjugation away from specific regions

  • Advanced Monitoring:

    • Middle-down MS/MS analysis to characterize subunit conjugation patterns

    • Ion mobility MS to separate conformational isomers with identical mass

    • Multi-attribute monitoring of critical quality attributes related to conjugation

Research has shown that achieving DAR homogeneity improves both pharmacokinetics and therapeutic index, making these methodological refinements particularly valuable for high-DAR antibodies .

How Does Drug Resistance Affect the Efficacy of DAR7 Antibodies and What Strategies Can Mitigate This?

Drug resistance represents a major challenge for ADC therapy. For DAR7 antibodies, several resistance mechanisms and corresponding mitigation strategies are particularly relevant:

  • Down-regulation of Target Antigen:

    • Development of bispecific ADCs targeting two distinct tumor antigens

    • Combination with agents that can upregulate target expression

    • Periodic monitoring of target expression during treatment

  • Altered Internalization Dynamics:

    • Design of pH-sensitive linkers that can release payload in the extracellular environment

    • Use of membrane-permeable payloads with bystander killing effects

    • Selection of targets with constitutive internalization patterns

  • Drug Efflux Pumps:

    • Incorporation of efflux pump inhibitors as part of the payload

    • Development of payloads that are poor substrates for efflux pumps

    • Higher DAR (such as DAR7) to overwhelm efflux capacity

  • Multi-specific Approaches:

    • Design of multi-specific ADCs combining different binding domains and payload classes

    • Careful antibody selection for optimal specificity and sensitivity

The high drug loading of DAR7 antibodies may provide an advantage in overcoming certain resistance mechanisms, as they deliver more cytotoxic molecules per binding event, potentially overwhelming cellular defense mechanisms .

What Are the Critical Process Parameters for Scaling Up DAR7 Antibody Production?

Scaling up DAR7 antibody production while maintaining consistent quality attributes requires careful control of numerous process parameters:

  • Pre-Conjugation Antibody Preparation:

    • Antibody concentration and buffer composition

    • Reduction conditions (temperature, reducing agent concentration, time)

    • Complete removal of reducing agents before conjugation

  • Conjugation Reaction Parameters:

    • Drug-linker to antibody molar ratio

    • Reaction temperature, pH, and time

    • Mixing method and speed

    • Protection from light and oxygen

  • Post-Conjugation Processing:

    • Quenching method

    • Purification strategy (typically tangential flow filtration)

    • Filtration parameters

Design of Experiments (DOE) represents a valuable approach for process development, allowing systematic exploration of parameter interactions and identification of a robust design space. A full factorial design with center points can effectively identify critical process parameters and their interactions, facilitating reliable scale-up while maintaining target DAR specifications .

How Do Different Analytical Methods Compare for DAR7 Characterization?

Multiple analytical methods are available for DAR characterization, each with specific advantages for DAR7 antibodies:

For comprehensive characterization of DAR7 antibodies, a combination of HIC-HPLC for DAR distribution and LC-MS for mass confirmation represents the most effective analytical strategy, as demonstrated with IMMU-132 characterization .

What Experimental Design Approaches Are Most Effective for Optimizing DAR7 Antibody Conjugation?

Systematic experimental design is crucial for developing reproducible DAR7 antibodies. The following methodological approaches have proven effective:

  • Sequential Optimization Strategy:

    • Begin with antibody reduction optimization (disulfide bond reduction)

    • Follow with drug-linker addition optimization

    • Finally optimize purification parameters

  • Full Factorial Design:

    • For early-phase development with 16 experiments in corners and three center-points

    • Enables identification of parameter interactions

    • Provides data for creating a robust design space

  • Parameter Selection:

    • Critical parameters for DAR7 optimization typically include:

      • Reduction agent concentration and time

      • Drug-linker excess ratio

      • Reaction temperature and pH

      • Reaction time

  • Scale-Down Model Development:

    • Create appropriate scale-down models to avoid introducing undesired variability

    • Ensure model accurately represents manufacturing-scale behavior

    • Validate scale-down model with targeted verification runs

The experimental design should focus specifically on achieving the target DAR range consistently, with appropriate quality controls at each step to ensure the final product meets specifications .

How Should Researchers Validate Antibody Specificity for ADC Development?

Antibody specificity validation is essential for successful ADC development, particularly for high-DAR constructs where binding characteristics may be affected by extensive conjugation. A rigorous validation approach should include:

  • Multiple Cell Line Testing:

    • Use cell lines with validated target expression levels

    • Include negative control cell lines

    • Compare binding before and after conjugation

  • Antibody Screening and Selection:

    • Compare multiple antibody clones for specificity

    • Assess antibody performance via multiple techniques

    • Characterize cross-reactivity patterns

  • Signal-to-Noise Ratio Optimization:

    • Select antibodies with optimal signal-to-noise ratios

    • Verify specific nuclear or membrane localization as appropriate

    • Validate with genetic knockdown/knockout controls

  • Cross-Reactivity Assessment:

    • Evaluate potential cross-reactivity with related proteins

    • Test across tissues of interest and potential off-target tissues

    • Perform competitive binding assays with known ligands

Research on antibody selection for specific targets like AR-V7 demonstrates that rigorous validation across multiple techniques (western blotting, immunocytostaining) and cell line models is essential to identify antibodies with suitable specificity and sensitivity for ADC development .

What Are the Best Practices for Ensuring DAR7 Antibody Stability During Manufacturing and Storage?

High-DAR antibodies present unique stability challenges due to increased hydrophobicity and potential aggregation. Best practices include:

  • Formulation Optimization:

    • Buffer selection tailored to high-DAR constructs

    • Addition of appropriate stabilizers (sugars, surfactants)

    • Optimization of pH and ionic strength

  • Manufacturing Considerations:

    • Minimize exposure to light and oxidizing conditions

    • Control temperature throughout manufacturing

    • Implement gentle mixing protocols to minimize mechanical stress

  • Lyophilization Approach:

    • Development of optimized lyophilization cycles

    • Selection of appropriate cryoprotectants

    • Careful control of residual moisture

  • Stability Monitoring Program:

    • Real-time and accelerated stability studies

    • Monitoring of DAR distribution over time

    • Assessment of free drug release during storage

IMMU-132, with its high DAR of approximately 7.6, demonstrated excellent stability in lyophilized form for several years, indicating that proper manufacturing and formulation can overcome potential stability challenges of high-DAR antibodies .

How Can Researchers Optimize Analytical Methods for DAR7 Quantification?

Accurate and precise DAR quantification is essential for research and quality control of high-DAR antibodies. Method optimization should focus on:

  • Sample Preparation Optimization:

    • For deglycosylated analysis, optimize PNGase F treatment conditions

    • Determine optimal sample concentration for each analytical method

    • Standardize reduction protocols for subunit analysis

  • HIC-HPLC Method Development:

    • Selection of appropriate column chemistry

    • Optimization of mobile phase composition and gradient

    • Temperature and flow rate optimization

  • Mass Spectrometry Method Refinement:

    • Source parameter optimization for intact protein ionization

    • Deconvolution algorithm selection and parameter tuning

    • Automated data processing workflow development

  • Method Validation:

    • Establish method linearity, precision, and accuracy

    • Determine limits of detection and quantification

    • Assess method robustness across sample types and preparations

Advanced analytical platforms like the ZenoTOF 7600 system combined with automated data analysis software can streamline DAR determination, enabling rapid and accurate characterization of both glycosylated and deglycosylated forms of ADCs with high DAR values .

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