DERP1 Antibody

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Description

Definition and Biological Role of DERP1 Antibody

The DERP1 Antibody refers to immunoglobulins produced in response to exposure to Der p 1, a cysteine protease and major allergen from the house dust mite Dermatophagoides pteronyssinus. These antibodies play critical roles in both allergic sensitization (IgE) and potential therapeutic interventions (IgG/IgA) . Der p 1 is structurally homologous to Der f 1 (81% sequence identity) from D. farinae, but species-specific antibody responses dominate due to distinct conformational epitopes .

Epitope Characterization

X-ray crystallography reveals that Der p 1 interacts with antibodies via conformational epitopes. Key findings include:

  • Cross-reactive epitopes: The mAb 4C1 binds a conserved region shared between Der p 1 and Der f 1, partially overlapping with human IgE-binding sites .

  • Species-specific epitopes: mAbs 5H8 and 10B9 target unique Der p 1 regions. Mutagenesis studies show residues Ser13, Ser19, and Ser180 in Der p 1 are critical for mAb 10B9 specificity .

Table 1: Affinity of Der f 1 Mutants for mAb 10B9

ConstructKDK_D (Mean)Maximum Response Units
Wild-type Der f 139.1 μM3,560
S13A S19Q S180N2 nM97
Recombinant Der p 154 nM99.3
Data from surface plasmon resonance (SPR) analysis .

IgE Antibody Detection

  • Clinical utility: IgE against Der p 1 has 89% positivity in D. pteronyssinus-sensitized asthmatics and predicts immediate asthmatic responses (AUC = 0.913) .

  • Specificity: Der p 1-specific IgE outperforms crude HDM extracts in distinguishing genuine sensitization .

Table 2: Antibody Levels in Allergic vs. Healthy Controls

Antibody TypeAllergic Patients (AU/mL)Controls (AU/mL)pp-value
IgE (Der p 1)12.5 ± 3.21.8 ± 0.6<0.0001
IgG (Der p 1)45.2 ± 8.75.4 ± 1.2<0.0001
Data derived from ELISA studies .

Immunotherapy Approaches

  • Rebinant Der p 1 vaccines: Subcutaneous immunotherapy with recombinant Der p 1 increases IgG titers and reduces IgE-mediated responses in murine models .

  • Immunotoxins: A chimeric protein (proDerp1αS) combining Der p 1 with α-sarcin induces targeted cell death in IgE-sensitized basophils, showing promise for allergen-specific therapy .

Mechanism of Action

  • Epithelial barrier disruption: Der p 1 cleaves claudin-1, reducing transepithelial electrical resistance (TEER) by 60–70% in nasal epithelial cells, exacerbating inflammation via IL-6 secretion .

  • Dose-dependent effects: TEER reduction peaks at 30 minutes post-exposure (p<0.0001p < 0.0001), with greater sensitivity in HDM-allergic patients (p=0.0259p = 0.0259) .

ELISA and Western Blot

  • Reproducibility: Intra-assay CV for anti-Der p 1 IgG ELISA kits ranges from 6.0% (3.2 ng/ml) to 8.9% (50 ng/ml) .

  • Standardization: Der p 1-specific IgA/IgG/IgE levels are quantified using AU/mL thresholds (mean + 2 SD of controls) .

Future Directions

Research priorities include optimizing epitope-focused vaccines and understanding IgE-FcεRI internalization mechanisms to enhance immunotoxin efficacy . The creation of chimeric allergens (e.g., Der f 1 mutants with Der p 1 epitopes) provides a blueprint for cross-reactive allergy treatments .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Description

The DERP1 antibody is generated through immunization of a rabbit with a recombinant Dermatophagoides pteronyssinus DERP1 (99-320aa). This process triggers the rabbit's B lymphocytes to produce IgG antibodies specifically targeting the immunogen. The polyclonal DERP1 antibody is purified from the rabbit serum using protein A/G affinity chromatography. It is recommended for use in detecting Dermatophagoides pteronyssinus DERP1 protein in ELISA and Western blot assays.

DERP1 (Der p 1) is a major allergen produced by the house dust mite Dermatophagoides pteronyssinus. This protein is a primary trigger of allergic reactions in susceptible individuals, particularly those with dust mite allergies. Der p 1, possessing protease activity, is capable of cleaving transmembrane proteins like occludin and claudin, leading to disruption of the bronchial epithelial barrier.

Form
Liquid
Lead Time
Typically, orders are dispatched within 1-3 working days of receipt. Delivery times may vary based on the purchasing method or location. Please consult your local distributor for specific delivery details.
Synonyms
DERP1Peptidase 1 antibody; EC 3.4.22.65 antibody; Allergen Der p I antibody; Major mite fecal allergen Der p 1 antibody; allergen Der p 1 antibody
Target Names
DERP1
Uniprot No.

Target Background

Function
This antibody targets a thiol protease with a preference for substrates containing a large hydrophobic side chain at the P2 position or with basic residues.
Protein Families
Peptidase C1 family
Subcellular Location
Secreted.

Q&A

What is Der p 1 and why is it important in allergy research?

Der p 1 is a major allergen produced by the house dust mite Dermatophagoides pteronyssinus that belongs to the papain-like cysteine protease family. It is a critical protein in allergy research for several reasons:

Der p 1 functions as a powerful allergen due to its protease activity, which enables it to cleave transmembrane proteins like occludin and claudin, disrupting the bronchial epithelial barrier . This epithelial damage facilitates allergen penetration and sensitization. Epidemiological studies have highlighted Der p 1 as an independent risk factor for asthma severity .

The allergen triggers IgE-mediated hypersensitivity reactions in susceptible individuals, making it particularly relevant for studying the mechanisms underlying dust mite allergies. Structurally, Der p 1 contains both conformational and linear epitopes that interact with antibodies, making it an excellent model for studying allergen-antibody interactions .

Methodologically, researchers use Der p 1 to:

  • Develop therapeutic strategies for allergic diseases

  • Investigate fundamental immunological mechanisms

  • Create diagnostic tools for allergen quantification

  • Design novel immunotherapy approaches

How are Der p 1 antibodies produced and purified for research applications?

Der p 1 antibodies for research applications are produced through several methodological approaches:

Polyclonal Antibody Production

The standard method involves immunizing rabbits with recombinant Dermatophagoides pteronyssinus DERP1 (typically amino acids 99-320). This stimulates the rabbit's immune system, specifically B lymphocytes, to produce IgG antibodies specific to the Der p 1 immunogen. These polyclonal antibodies are then purified from rabbit serum using protein A/G affinity chromatography techniques .

Monoclonal Antibody Development

For more specific applications, monoclonal antibodies are developed through:

  • Immunization of mice with recombinant dimeric Der p 1

  • Isolation of B cells producing Der p 1-specific antibodies

  • Cell fusion to create hybridomas

  • Screening and selection of clones producing antibodies with desired specificity

  • Large-scale production and purification via affinity chromatography

Advanced Techniques

Recent advances include:

  • Phage display libraries for isolating Der p 1-specific antibody fragments

  • Combinatorial libraries derived from peripheral blood mononuclear cells of allergic donors

  • Single B cell antibody sequencing to obtain human monoclonal antibodies

The purification process typically involves multiple chromatography steps to ensure high specificity and purity for research applications.

What are the experimental methodologies for Der p 1 antibody application in allergy research?

Der p 1 antibodies serve as versatile tools in allergy research through various experimental methodologies:

Quantitative Detection Methods

  • ELISA: Two-site monoclonal antibody systems use a capture antibody (such as 4C1, 5H8, or 6A8) immobilized on plates and a biotinylated detection antibody (such as B-5H8 or B-4C1) followed by streptavidin-peroxidase and ABTS/H₂O₂ substrate development .

  • Western Blotting: For detection of Der p 1 in complex protein mixtures, using antibodies at specific dilutions to identify the approximately 25 kDa protein band .

Structural Analysis Techniques

  • X-ray Crystallography: Formation of Der p 1-antibody complexes with Fab fragments to determine the precise atomic arrangements at epitopes .

  • Nuclear Magnetic Resonance (NMR): Using differentially labeled Der p 1 (such as methyl-labeled) to observe chemical shift perturbations upon antibody binding .

Functional Studies

  • Inhibition Assays: Measuring the ability of antibodies to block IgE binding to Der p 1, which provides information about potential therapeutic applications .

  • Cell-Based Assays: Evaluating the effect of Der p 1-antibody complexes on effector cells from allergic individuals, including degranulation assays using sensitized basophils .

Therapeutic Applications

  • Immunotoxin Development: Using Der p 1 as a targeting domain fused with cytotoxic moieties like α-sarcin ribotoxin to specifically target effector cells involved in allergic reactions .

What are the structural differences between Der p 1 and Der f 1 that affect antibody recognition?

The structural differences between Der p 1 (Dermatophagoides pteronyssinus) and Der f 1 (Dermatophagoides farinae) that affect antibody recognition have been elucidated through crystallography and mutagenesis studies:

Molecular Determinants of Specificity

X-ray crystallography of allergen-antibody complexes revealed that specific amino acid differences at key positions determine species specificity and cross-reactivity . The epitopes for species-specific antibodies (mAb 5H8 and 10B9) are structurally distinct from those recognized by cross-reactive antibodies (mAb 4C1).

Epitope Characteristics

When examining the structural data:

  • Der p 1-specific mAb 5H8 and 10B9 epitopes are located in different, non-overlapping regions of the Der p 1 molecule

  • The epitope for mAb 10B9 partially overlaps with that for cross-reactive mAb 4C1

  • The substitution of just 1-3 amino acid residues in Der f 1 with the corresponding Der p 1 residues was sufficient to create binding sites for Der p 1-specific antibodies

Cross-Reactivity Assessment

Quantitatively, standard Der p 1 detection assays typically show cross-reactivity with Der f 1 of approximately 10% or less . This limited cross-reactivity reflects the structural similarities between the two allergens while highlighting the importance of specific amino acid differences.

Epitope Mapping Data

Analysis of mAb binding via surface plasmon resonance and ELISA inhibition assays demonstrated that among monoclonal antibodies raised against these allergens, only about 3% showed cross-reactivity between Der p 1 and Der f 1 .

What are the optimal storage and handling protocols for Der p 1 antibodies?

Optimal storage and handling of Der p 1 antibodies require specific methodological approaches to maintain their structural integrity and immunological function:

Temperature Requirements

Based on manufacturer protocols, most Der p 1 antibody preparations should be stored at -20°C for long-term stability . This includes:

  • Standard preparations (lyophilized or in solution)

  • Detection antibodies

  • Sample/standard dilution buffers

  • Streptavidin peroxidase components

Stability Considerations

ComponentStorage TemperatureStateDuration of Stability
Standard (e.g., lyophilized)-20°CLyophilized1+ years
Detection Antibody-20°CSolution6-12 months
Dilution Buffers-20°CSolution6-12 months
Streptavidin Peroxidase-20°CSolution6-12 months

Working Solution Preparation

For optimal experimental results:

  • Thaw components gradually at room temperature or 4°C

  • Avoid repeated freeze-thaw cycles (limit to ≤5 cycles)

  • Prepare working dilutions fresh for each experiment

  • For biotinylated detection antibodies, prepare 1:1,000 detection antibody/conjugate mix immediately before use

Quality Control Measures

  • Always validate antibody function using positive and negative controls

  • Perform regular titer checks if storing diluted antibody working solutions

  • Protect antibody solutions from direct sunlight during experimental procedures

  • Monitor pH and salt concentration of buffer solutions to prevent antibody denaturation

What techniques are available for mapping Der p 1 epitopes with high precision?

Der p 1 epitope mapping requires sophisticated methodological approaches to identify antibody binding sites with high precision:

Structural Biology Approaches

X-ray Crystallography: The gold standard for precise epitope mapping involves:

  • Formation of Der p 1-Fab fragment complexes

  • Crystal growth under optimized conditions

  • X-ray diffraction data collection

  • Structure determination at atomic resolution

  • Analysis of contact residues between Der p 1 and antibody

This approach has successfully mapped epitopes for mAb 4C1, 5H8, and 10B9, revealing that Der p 1-specific antibodies bind to different, non-overlapping regions of the allergen .

Molecular Engineering Methods

Site-Directed Mutagenesis: Based on crystallographic data, this approach involves:

  • Identification of key residues at the interface between Der p 1 and antibodies

  • Systematic mutation of these residues

  • Expression of mutant proteins

  • Assessment of antibody binding through ELISA or other immunoassays

  • Quantification of binding affinity changes

This method successfully identified determinants of species specificity by creating Der f 1 mutants that could bind Der p 1-specific antibodies through substitution of just 1-3 amino acids .

Biophysical Techniques

Nuclear Magnetic Resonance (NMR): Particularly useful for studying dynamic aspects of epitopes:

  • Methyl-labeled Der p 1 can be used to observe chemical shift perturbations upon antibody binding

  • Detergent can be added to tune the allergen-antibody binding for optimal NMR signal detection

  • Broadening of NMR signals indicates residues in proximity to the antibody binding site

Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS):

  • Measures protection of amide hydrogen atoms from exchange upon antibody binding

  • Can identify peptides involved in antibody interaction

  • Provides information on conformational epitopes that may be missed by other techniques

Computational Analysis

Surface complementarity indexes (Sc) can be calculated to measure the geometric fit between allergen and antibody surfaces, with values from 0 to 1 (where 1 indicates perfect fit) .

How can Der p 1 antibody-based ELISA assays be optimized for maximum sensitivity and reproducibility?

Optimizing Der p 1 antibody-based ELISA requires systematic methodological refinement across multiple parameters:

Antibody Selection and Optimization

  • Capture Antibody: Select monoclonal antibodies with high affinity and specificity for Der p 1 (e.g., mAb 4C1, 5H8, or 6A8)

  • Detection Antibody: Use biotinylated antibodies (e.g., B-4C1 or B-5H8) that bind to non-overlapping epitopes from the capture antibody

  • Antibody Concentration: Titrate to determine optimal working dilutions that provide maximum signal-to-noise ratio

Assay Protocol Optimization

  • Coating Conditions:

    • Optimize buffer pH and ionic strength

    • Determine optimal coating concentration and time

    • Coat plates overnight at 4°C for maximum binding

  • Blocking and Washing:

    • Use appropriate blocking buffer to minimize background

    • Perform 3× washes with 150μL wash buffer per well

    • Ensure complete removal of wash buffer between steps

  • Incubation Parameters:

    • Maintain consistent incubation times (1 hour ± 10 minutes at room temperature)

    • Use gentle agitation on a plate shaker to reduce variability

    • Keep plates away from direct sunlight during incubation

Standard Curve Preparation

For accurate quantification, prepare standards using a two-fold dilution series:

WellStandard ConcentrationPreparation Method
B1125 ng/mLAdd 500 μL of 250 ng/mL standard to 500 μL assay buffer
C162.5 ng/mLAdd 500 μL of 125 ng/mL standard to 500 μL assay buffer
D131.25 ng/mLAdd 500 μL of 62.5 ng/mL standard to 500 μL assay buffer
E115.63 ng/mLAdd 500 μL of 31.25 ng/mL standard to 500 μL assay buffer
F17.81 ng/mLAdd 500 μL of 15.63 ng/mL standard to 500 μL assay buffer
G13.91 ng/mLAdd 500 μL of 7.81 ng/mL standard to 500 μL assay buffer
H11.95 ng/mLAdd 500 μL of 3.91 ng/mL standard to 500 μL assay buffer

Detection System Optimization

  • Prepare fresh detection antibody/conjugate mix (1:1,000 dilution)

  • Optimize substrate development time for maximum sensitivity

  • Consider using streptavidin-peroxidase with ABTS/H₂O₂ substrate for consistent results

Data Analysis

  • Use log/log plots to linearize standard curve data for more accurate calculations

  • Calculate results by averaging duplicate OD values and subtracting blanks

  • Plot standards against known concentrations to determine unknown samples

What are the methodological approaches to assess cross-reactivity between Der p 1 and Der f 1 antibodies?

Cross-reactivity assessment between Der p 1 and Der f 1 antibodies requires systematic methodological approaches:

Direct Binding Assays

Competitive ELISA:

  • Coat plates with one allergen (e.g., Der p 1)

  • Pre-incubate antibodies with varying concentrations of potential cross-reactive allergen (e.g., Der f 1)

  • Add the mixture to coated plates

  • Detect bound antibody and quantify inhibition

  • Calculate cross-reactivity as the ratio of allergen concentrations needed for 50% inhibition

Epitope Analysis Through Mutagenesis

This approach involves:

  • Identifying key residues in Der p 1 and Der f 1 that differ between species

  • Creating mutant allergens with substitutions at these positions

  • Testing antibody binding to wild-type and mutant allergens

  • Quantifying the effect of mutations on binding affinity

Studies have shown that substituting 1-3 amino acid residues in Der f 1 with corresponding Der p 1 residues can create binding sites for Der p 1-specific antibodies like mAb 10B9 .

Surface Plasmon Resonance Analysis

This technique provides real-time binding kinetics:

  • Immobilize allergen on sensor chip

  • Flow antibody over the surface

  • Measure association and dissociation rates

  • Calculate binding constants (KD)

  • Compare values between Der p 1 and Der f 1 for the same antibody

Quantitative Cross-Reactivity Assessment

Standard Der p 1 detection assays typically show cross-reactivity with Der f 1 of approximately 10% or less . This can be precisely measured using:

  • Prepare standard curves with both pure Der p 1 and Der f 1

  • Calculate the ratio of signal intensities at equivalent concentrations

  • Express cross-reactivity as a percentage

In one comprehensive study, only about 3% (2/53) of monoclonal antibodies raised against Der p 1 and Der f 1 were cross-reactive, with most recognizing species-specific epitopes .

How do different monoclonal antibodies against Der p 1 compare in specificity, affinity, and epitope recognition?

Different monoclonal antibodies against Der p 1 exhibit distinct characteristics in terms of specificity, affinity, and epitope recognition, which have been methodically analyzed:

Epitope Mapping Comparison

X-ray crystallography studies have revealed the structural basis for antibody specificity :

Monoclonal AntibodySpecificityEpitope LocationOverlap with Other mAbs
mAb 5H8Der p 1-specificNon-overlapping with 10B9/4C1None
mAb 10B9Der p 1-specificDistinct regionPartial overlap with 4C1
mAb 4C1Cross-reactive (Der p 1 & Der f 1)Interface regionPartial overlap with 10B9
mAb 6A8Der f 1-specificNot fully characterizedNot determined

Structural Characteristics of Binding

When examining the structural data of Der p 1-antibody complexes:

  • The epitope for mAb 5H8 shows no overlap with the epitopes for 4C1 or 10B9

  • Upon binding to Der p 1, the Fab fragment of mAb 10B9 forms a rare α helix in its third CDR of the H chain

  • Surface area and hydrogen bond patterns between allergen and antibody are similar despite different epitope locations

Functional Differences

The antibodies show different functionalities:

  • Some antibodies interfere with IgE binding, making them potential therapeutic tools

  • Differential ability to block allergen-IgE interactions correlates with epitope location

  • The cross-reactive mAb 4C1 and Der p 1-specific mAb 10B9 compete for binding to Der p 1 but not to Der f 1

Quantitative Binding Parameters

Analysis of binding kinetics reveals:

  • Differences in association and dissociation rates

  • Variable shape complementarity indices (Sc) that measure the geometric fit between allergen and antibody surfaces

  • The ability of specific antibody combinations to block up to 83% of IgE binding to natural allergens

What are the structural and biophysical characteristics of Der p 1-antibody complexes?

Der p 1-antibody complexes exhibit distinct structural and biophysical characteristics that have been elucidated through advanced methodologies:

Crystal Structure Analysis

X-ray crystallography has revealed the atomic details of Der p 1 in complex with Fab fragments of monoclonal antibodies :

  • Epitope Distribution: The epitopes for Der p 1-specific antibodies (mAb 5H8 and 10B9) are located in different, non-overlapping regions of the Der p 1 molecule

  • Binding Interface: Despite different epitope locations, the surface area and identity of amino acid residues involved in hydrogen bonds between allergen and antibody are similar

  • Structural Adaptations: Upon binding to Der p 1, the Fab fragment of mAb 10B9 undergoes conformational changes, forming a rare α helix in its third CDR of the H chain

Biophysical Parameters

Quantitative analysis of Der p 1-antibody complexes reveals:

ParameterTypical RangeSignificance
Surface Area600-900 ŲExtent of molecular contact
Shape Complementarity Index (Sc)0.60-0.75Geometric fit between surfaces
Number of Hydrogen Bonds8-15Strength of specific interactions
CDR InvolvementH1, H2, H3, L1, L2, L3Distribution of paratope

Conformational Dynamics

NMR studies have provided insights into the dynamic aspects of Der p 1-antibody interactions:

  • Chemical shift perturbations between bound and free states identify residues involved in antibody binding

  • Differential line broadening of NMR signals indicates residues in proximity to the antibody binding site

  • Methyl labeling allows observation of Der p 1-antibody complexes at high molecular weights

Epitope Characteristics

Detailed analysis of epitope-paratope interactions shows:

  • Conformational epitopes predominate over linear epitopes

  • Epitopes can include carbohydrate moieties (as seen in the related allergen Bla g 2)

  • The cross-reactive epitope (mAb 4C1) and species-specific epitope (mAb 10B9) partially overlap, explaining their competitive binding behavior

How can site-directed mutagenesis inform the design of hypoallergenic Der p 1 variants for immunotherapy?

Site-directed mutagenesis provides a methodical approach to designing hypoallergenic Der p 1 variants for immunotherapy:

Rational Mutation Design Workflow

Based on epitope mapping studies :

  • Structural Analysis:

    • Identify key residues in Der p 1 involved in IgE binding through X-ray crystallography

    • Analyze hydrogen bonds and van der Waals contacts in allergen-antibody complexes

    • Calculate the shape complementarity index (Sc) to quantify binding surface fit

  • Mutation Strategy Development:

    • Target residues critical for IgE binding but not T-cell epitope recognition

    • Prioritize mutations that disrupt surface complementarity

    • Design substitutions that alter charge, size, or hydrophobicity at the binding interface

  • Mutant Production:

    • Generate expression constructs with site-directed mutations

    • Express mutant proteins in appropriate systems (e.g., Pichia pastoris)

    • Purify and characterize mutant allergens

Experimental Validation

Rigorous testing of candidate hypoallergens involves:

  • Antibody Binding Assays:

    • Direct binding ELISA to assess IgE recognition

    • ELISA inhibition to quantify reduced IgE binding

    • Dose-response curves comparing wild-type and mutant proteins

  • Functional Testing:

    • Basophil activation tests using cells from allergic patients

    • Mediator release assays to assess allergenic potential

    • T-cell proliferation assays to confirm preserved T-cell epitopes

Case Study Findings

Research has demonstrated successful approaches to creating hypoallergens:

  • Mutation of specific residues in the epitope for mAb 5H8 resulted in impaired antibody binding to Der p 1

  • Creation of a Der p 1-specific epitope in Der f 1 required substitution of only 1-3 amino acid residues

  • These findings suggest targeted mutations can significantly reduce allergenicity while maintaining immunogenicity

Therapeutic Implications

The developed hypoallergens can be used for:

  • Allergen-specific immunotherapy with reduced risk of adverse reactions

  • Investigation of fundamental mechanisms of IgE responses

  • Development of personalized approaches to allergen immunotherapy based on patient-specific IgE reactivity profiles

What methodologies enable the development of Der p 1-based immunotoxins for treating dust mite allergies?

The development of Der p 1-based immunotoxins follows a systematic methodological pathway:

Design and Construction Strategy

Based on research with the proDerp1αS construct :

  • Fusion Protein Design:

    • Select Der p 1 as the cell-targeting domain to bind IgE on effector cells

    • Choose α-sarcin ribotoxin as the toxic moiety for its potent ribonucleolytic activity

    • Design an optimal linker sequence to maintain both protein functions

    • Include a pro-region for proper folding and expression

  • Expression System Optimization:

    • Utilize the yeast Pichia pastoris as an expression host

    • Optimize codon usage for efficient protein production

    • Develop purification protocols to obtain homogeneous protein preparations

Functional Characterization

The immunotoxin requires validation of both functional domains:

  • Der p 1 Activity Assessment:

    • Confirm preservation of Der p 1 protease activity in the fusion protein

    • Verify IgE-binding capability through immunoassays

    • Evaluate binding to basophils from dust mite-allergic patients

  • Toxic Moiety Validation:

    • Confirm preservation of α-sarcin ribonucleolytic action

    • Assess protein synthesis inhibition by the immunotoxin

    • Verify specificity of the cytotoxic effect

Efficacy Testing

Rigorous experimental procedures to evaluate therapeutic potential:

  • In vitro Cell Models:

    • Test with humRBL-2H3 cells sensitized with house dust mite-allergic sera

    • Assess cell degranulation and death triggered by the immunotoxin

    • Confirm specificity by comparing responses with non-allergic sera controls

  • Primary Cell Testing:

    • Isolate basophils from dust mite-allergic patients

    • Evaluate IgE-binding and degranulation responses

    • Assess internalization of the immunotoxin after cell surface binding

Results and Future Directions

The research demonstrated:

  • The proDerp1αS construct triggered cell death specifically in Der p 1 sera sensitized cells

  • Equivalent IgE-binding and degranulation were observed with both the construct and native Der p 1

  • Lack of cytotoxicity on patient basophils was linked to insufficient internalization after IgE binding

These findings support the development of second-generation immunotoxins with improved internalization properties for more effective allergy treatment strategies.

How do conformational dynamics in Der p 1 influence antibody binding and epitope recognition?

Conformational dynamics in Der p 1 play a crucial role in antibody binding and epitope recognition, as revealed through sophisticated biophysical methodologies:

NMR Analysis of Dynamic Interactions

Nuclear Magnetic Resonance spectroscopy provides insights into the dynamic nature of Der p 1-antibody interactions :

  • Chemical Shift Perturbation Analysis:

    • ¹H-¹⁵N labeled Der p 1 shows specific chemical shift changes when binding antibodies

    • Detergent addition can tune the binding affinity for optimal NMR signal detection

    • Differential peak broadening identifies residues at the binding interface

  • Methyl Group Labeling Strategy:

    • At high molecular weights of allergen-antibody complexes, methyl groups remain observable

    • Methyl-labeled Der p 1 successfully identified binding sites for both human IgE and murine IgG antibodies

    • This approach revealed that epitopes typically include residues in close proximity that are broadened or perturbed upon antibody binding

Structural Flexibility and Epitope Accessibility

X-ray crystallography combined with computational analysis reveals:

  • Conformational Epitopes:

    • Most Der p 1 epitopes are conformational rather than linear

    • Antibody binding can induce conformational changes in both the allergen and antibody

    • The Fab fragment of mAb 10B9 forms a rare α helix in its third CDR of the H chain upon binding to Der p 1

  • Solvent Accessibility Changes:

    • Hydrogen-deuterium exchange mass spectrometry (HDX-MS) shows protection from exchange in regions involved in antibody binding

    • Three discontinuous peptides in close proximity on the crystal structure can form a single conformational epitope

    • Surface exposure of key residues determines their contribution to antibody recognition

Methodological Challenges and Solutions

Studying conformational dynamics presents specific challenges:

  • Technical Limitations:

    • NMR analysis of complete allergen-antibody complexes is challenging due to size constraints

    • The distribution of methyl labels may not be ideal for all allergens

    • Interpretation requires generous assumptions about which residues might be directly involved

  • Advanced Solutions:

    • Combining multiple techniques (X-ray crystallography, NMR, HDX-MS) provides complementary information

    • Tuning solvent conditions empirically can optimize detection of conformational changes

    • Computational modeling can help predict dynamic behavior based on static structures

What are the molecular determinants of species specificity and cross-reactivity between Der p 1 and Der f 1 antibodies?

The molecular determinants of species specificity and cross-reactivity between Der p 1 and Der f 1 antibodies have been systematically identified through integrated structural and functional approaches:

Key Residues Determining Specificity

Site-directed mutagenesis based on structural analysis has revealed:

  • Critical Amino Acid Positions:

    • Substitution of just 1-3 amino acid residues in Der f 1 with corresponding Der p 1 residues can create binding sites for Der p 1-specific antibodies

    • The mutation of these key residues is sufficient to convert species specificity

  • Epitope Engineering Results:

    • Step-wise mutagenesis successfully created a Der p 1-specific epitope in Der f 1

    • The engineered epitope for mAb 10B9 in Der f 1 confirmed the role of specific residues in determining antibody specificity

Structural Basis of Cross-Reactivity

X-ray crystallography of allergen-antibody complexes revealed:

  • Epitope Comparison:

    • The cross-reactive mAb 4C1 recognizes a common epitope between Der p 1 and Der f 1

    • This epitope is structurally conserved between the two allergens despite sequence differences

  • Overlapping Epitopes:

    • The Der p 1-specific mAb 10B9 and cross-reactive mAb 4C1 bind to partially overlapping epitopes on Der p 1

    • This explains why mAb 10B9 can inhibit the binding of mAb 4C1 to Der p 1 but not to Der f 1

Quantitative Assessment of Cross-Reactivity

Experimental measurement of cross-reactivity shows:

  • Statistical Analysis:

    • Only about 3% (2/53) of murine monoclonal antibodies raised against Der p 1 and Der f 1 were cross-reactive

    • The majority (97%) recognized species-specific epitopes

  • Detection Assay Performance:

    • Standard Der p 1 detection kits show cross-reactivity with Der f 1 of approximately 10% or less

    • This limited cross-reactivity reflects the high degree of structural similarity while highlighting the importance of specific residue differences

Methodology for Specificity Analysis

A comprehensive approach includes:

  • Structure-Based Design:

    • Analysis of crystal structures to identify contact residues

    • Calculation of shape complementarity indices (Sc) between allergen-antibody interfaces

    • Identification of hydrogen bonds and van der Waals contacts

  • Validation Techniques:

    • Direct binding ELISA to assess mutant binding

    • ELISA inhibition to quantify competitive binding

    • Dose-response curves comparing wild-type and mutant proteins

How can single B cell antibody sequencing advance the development of human monoclonal IgE antibodies against Der p 1?

Single B cell antibody sequencing represents a breakthrough methodology for developing human monoclonal IgE antibodies against Der p 1:

Technical Workflow

The process involves several sophisticated steps:

  • B Cell Isolation:

    • Collection of peripheral blood mononuclear cells (PBMCs) from dust mite-allergic donors

    • Identification and sorting of Der p 1-specific B cells using fluorescently labeled allergen

    • Single-cell isolation through flow cytometry or microfluidic systems

  • Antibody Gene Amplification:

    • Extraction of RNA from isolated single B cells

    • Reverse transcription of IgE heavy and light chain variable regions

    • PCR amplification of antibody genes using optimized primers for IgE isotypes

  • Expression Vector Construction:

    • Cloning of variable region sequences into appropriate expression vectors

    • Engineering of complete antibody constructs (either as full IgE or as hybrid molecules)

    • Transfection of expression systems (typically mammalian cells)

Advantages Over Previous Approaches

This technology overcomes limitations of earlier methods:

  • Comparison with Traditional Methods:

    MethodAdvantagesLimitations
    Phage DisplayHigh-throughput screeningPotential pairing artifacts
    Hybridoma TechnologyStable productionInefficient for human IgE
    Combinatorial LibrariesDiverse repertoireRandom pairing of chains
    Single B Cell SequencingNative pairing preservedTechnical complexity
  • Natural Pairing Preservation:

    • Maintains the natural pairing of heavy and light chains from the original B cell

    • Preserves the specificity and affinity of the antibody as it existed in the allergic patient

    • Enables the isolation of rare, high-affinity IgE antibodies

Research Applications

The isolated human monoclonal IgE antibodies enable:

  • Advanced Epitope Mapping:

    • Determination of clinically relevant IgE epitopes on Der p 1

    • Comparison of epitopes recognized by IgE versus IgG antibodies

    • Identification of immunodominant epitopes in allergic populations

  • Therapeutic Development:

    • Design of hypoallergens with reduced IgE binding for immunotherapy

    • Development of antibody-based inhibitors that block IgE-Der p 1 interactions

    • Creation of diagnostic tools with enhanced specificity

Methodological Challenges

Implementation requires addressing several technical hurdles:

  • Technical Limitations:

    • Low frequency of allergen-specific B cells in peripheral blood

    • Low expression levels of surface IgE on B cells

    • Complex cloning procedures for large IgE antibody genes

  • Recent Advancements:

    • Development of human hybridoma techniques specifically for IgE-producing cells

    • Optimization of single-cell sorting and sequencing protocols

    • Improved expression systems for recombinant human IgE production

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