DTD1 Human

D-Tyrosyl-tRNA Deacylase 1 Human Recombinant
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Description

Introduction to DTD1 Human

DTD1, or D-aminoacyl-tRNA deacylase 1, is an enzyme crucial for maintaining the fidelity of protein synthesis by ensuring that only L-amino acids are incorporated into proteins. This enzyme is responsible for removing D-amino acids that are mistakenly attached to transfer RNA (tRNA) molecules, thereby preventing their incorporation into proteins. DTD1 is present in humans and plays a significant role in various biological processes, including synaptic transmission and neurobiological functions.

Biological Function of DTD1

DTD1 is involved in the quality control of protein synthesis by acting as a chiral proofreading enzyme. It specifically targets and deacylates D-amino acids from tRNA molecules, which are essential for maintaining the stereochemical specificity of amino acid incorporation during translation . This function is critical for ensuring that proteins are synthesized correctly and function properly within the cell.

Role in Neurobiological Processes

Recent studies have highlighted the importance of DTD1 in neurobiological processes. It plays a crucial role in maintaining the homeostasis of D-serine and D-aspartate, which are involved in N-methyl-D-aspartate receptor (NMDAR) signaling. This signaling pathway is essential for synaptic transmission, neuronal morphology, and spatial learning and memory . DTD1 deficiency can lead to changes in the quantity of functional NMDAR subunits in postsynaptic compartments, affecting synaptic strength and dendritic morphology.

Expression and Localization

DTD1 is expressed in various tissues, including the brain, where it is involved in synaptic functions . The Human Protein Atlas provides detailed information on the expression of DTD1 in human tissues and cancer cells, showing its presence in brain tissues but limited or undetectable expression in many cancer types .

Product Specs

Introduction
D-Tyrosyl-tRNA Deacylase 1 (DTD1), a member of the DTD family, plays a crucial role in hydrolyzing D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr), potentially acting as a defense mechanism against D-tyrosine's harmful effects. This ATPase is involved in DNA replication by facilitating CDC45 loading onto pre-replication complexes, specifically localizing to the DUE (DNA unwinding elements) of active replication origins. DTD1 is widely expressed in adult and fetal tissues, with the highest concentrations found in the testis, ovary, spleen, and brain. It may be a risk factor for AIA (aspirin-intolerant asthma) due to its ability to hydrolyze D-tryptophan and interact with tyrosyl-tRNA synthetase (tyrRS), which promotes a pro-inflammatory phenotype.
Description
Recombinant human DTD1, produced in E. coli, is a single, non-glycosylated polypeptide chain composed of 232 amino acids (1-209 a.a.) with a molecular weight of 25.9 kDa. The protein includes a 23 amino acid His-tag at the N-terminus and undergoes purification using proprietary chromatographic techniques.
Physical Appearance
A clear, sterile-filtered solution.
Formulation
The DTD1 protein solution (0.5 mg/ml) is supplied in a buffer containing 20 mM Tris-HCl (pH 8.0), 0.1 M NaCl, 10% glycerol, and 1 mM DTT.
Stability
For short-term storage (2-4 weeks), the protein can be stored at 4°C. For extended periods, it is recommended to store the protein frozen at -20°C. Adding a carrier protein (0.1% HSA or BSA) is advised for long-term storage. Repeated freeze-thaw cycles should be avoided.
Purity
The purity of the protein is determined to be greater than 85% by SDS-PAGE analysis.
Synonyms
bA379J5.3, bA555E18.1, C20orf88, DUEB, HARS2, pqn-68, D-tyrosyl-tRNA(Tyr) deacylase 1, DNA-unwinding element-binding protein B.
Source
Escherichia Coli.
Amino Acid Sequence
MGSSHHHHHH SSGLVPRGSH MGSMKAVVQR VTRASVTVGG EQISAIGRGI CVLLGISLED TQKELEHMVR KILNLRVFED ESGKHWSKSVMDKQYEILCV SQFTLQCVLK GNKPDFHLAM PTEQAEGFYN SFLEQLRKTY RPELIKDGKF GAYMQVHIQN DGPVTIELES PAPGTATSDP KQLSKLEKQQ QRKEKTRAKG PSESSKERNT PRKEDRSASS GAEGDVSSER EP.

Q&A

What is DTD in cognitive research and how is it measured?

DTD (draws to decision) is a quantitative measure used in probabilistic reasoning tasks to assess how much information a person gathers before making a decision. It is typically measured using variants of the "beads in the jar" task, where participants view sequences of items (e.g., beads, fish) drawn from one of two sources with known probability distributions (e.g., 60:40 ratios). The number of items a participant requests to see before deciding which source the items come from constitutes their DTD score . Lower DTD scores indicate less information gathering before decision-making.

How do experimental designs standardize DTD measurements?

Researchers standardize DTD assessments by using consistent probability ratios (commonly 60:40), standardized instructions, pseudorandomized sequences identical across participants, and controlled visual presentations . Many modern paradigms display all previously sampled items throughout the task to reduce working memory demands, particularly when comparing clinical populations that might have cognitive impairments . Researchers often report both the continuous DTD measure and the dichotomous JTC classification to facilitate comparison across studies.

How reliable are DTD measurements within experimental blocks?

Studies show high intra-class correlation coefficients (ICCs) for DTD within experimental blocks, indicating strong measurement consistency. For example, research has demonstrated ICC values between 0.94-0.98 across different experimental conditions for both patients with psychosis and healthy controls . This high reliability suggests that individual differences in information-gathering behavior remain stable within similar cost-benefit contexts.

What modifications can be made to basic DTD paradigms?

Standard DTD paradigms can be modified by manipulating cost structures (introducing rewards for correct answers or costs for gathering information), changing probability ratios to adjust difficulty, using emotionally salient versus neutral stimuli, implementing self-referential versions, or adapting the context (e.g., using fish in lakes instead of beads in jars) . These modifications allow researchers to investigate specific aspects of decision-making under different conditions and constraints.

How does manipulation of information sampling costs affect DTD measurements?

When explicit costs are assigned to gathering additional information, both patients with psychosis and healthy controls reduce their information sampling, although controls typically demonstrate greater flexibility in adjusting their behavior . The difference in DTD between patients and controls diminishes as information sampling becomes explicitly costly, suggesting that patients may inherently experience information gathering as more costly regardless of external cost structures . This finding provides insight into the mechanisms underlying the JTC bias in clinical populations.

What statistical approaches are recommended for analyzing non-normally distributed DTD data?

Since DTD data often violate normality assumptions, researchers should consider several statistical approaches. For group comparisons, repeated-measures ANOVA is generally robust to violations of normality with adequate sample sizes . For correlational analyses with clinical measures, Spearman's rank correlations are preferable . Researchers should also consider excluding extreme outliers (e.g., those exceeding ±2SD) and applying appropriate corrections (e.g., Greenhouse-Geisser) when the assumption of sphericity is violated .

How do we account for individual differences in baseline DTD when designing experiments?

Accounting for individual differences requires implementing within-subject designs, using multiple blocks to establish individual baselines, calculating intra-class correlation coefficients to assess consistency, and including relevant covariates in statistical analyses (e.g., IQ, clinical symptom measures) . Research shows that factors such as IQ may correlate with DTD in clinical populations, highlighting the importance of measuring and controlling for these variables .

What physiological or neurobiological methods can complement behavioral DTD measurements?

Researchers can incorporate neuroimaging techniques (fMRI, EEG), eye-tracking, physiological measures of autonomic arousal, and pharmacological manipulations to provide deeper insights into the mechanisms underlying DTD behavior. These methods help establish links between behavioral performance and underlying neural processes, potentially identifying biomarkers associated with abnormal information gathering and decision making.

How does DTD differ between early psychosis patients and chronic schizophrenia patients?

Evidence suggests different mechanisms may underlie reduced DTD in early versus chronic psychosis. In early psychosis, higher attributed costs to information sampling appear to be the primary driver of the JTC bias . In contrast, some studies with chronic schizophrenia patients suggest that noisy decision-making processes may play a larger role . This highlights the importance of clearly defining patient populations in research and avoiding generalizing findings across different illness stages.

What is the relationship between DTD measurements and clinical symptom severity?

Studies consistently show negative correlations between DTD and positive symptom severity in psychosis, with more severe symptoms associated with gathering less information before deciding. Research has demonstrated significant negative correlations between DTD and CAARMS positive symptom scores (correlation coefficients ranging from -0.489 to -0.515) . In non-clinical populations, DTD has been found to correlate with schizotypal traits, particularly measures of distress and preoccupation associated with unusual beliefs (PDI subscales) .

How does DTD performance change across different experimental cost structures in clinical populations?

Early psychosis patients show less adaptation to changing cost structures compared to healthy controls. While both groups reduce information sampling when costs increase, patients start from a lower baseline DTD and show smaller reductions . This suggests that patients may inherently view information sampling as costly regardless of explicit external costs. Despite these differences, patients still gather more information than would an ideal Bayesian agent in high-cost conditions, indicating that reduced sampling is not simply a floor effect .

Can DTD tasks be used to identify cognitive subtypes within clinical populations?

DTD paradigms can potentially identify cognitive subtypes within clinical populations based on different information gathering strategies. Research indicates significant correlations between DTD and symptoms, cognitive measures, and theoretical constructs like tolerance of uncertainty . By examining patterns of performance across different cost structures and computational modeling parameters, researchers may identify distinct cognitive mechanisms underlying similar behavioral presentations.

What are the methodological considerations when measuring DTD in medication-naive versus medicated patients?

When comparing medication-naive and medicated patients, researchers should consider potential effects of antipsychotic medications on decision-making processes, reward sensitivity, and cognitive function. Studies with early psychosis patients, who are often less medicated than chronic patients, provide valuable insights into the cognitive mechanisms underlying the JTC bias before substantial medication effects . Researchers should carefully document medication status, dosage, and duration, and consider these as potential covariates in analyses.

What theoretical frameworks explain reduced DTD in clinical populations?

Several competing frameworks have been proposed: (1) The "cost of information sampling" hypothesis suggests patients attribute higher subjective costs to gathering information, possibly due to intolerance of uncertainty or need for closure ; (2) The "noisy decision-making" hypothesis proposes increased cognitive noise leads to hasty decisions ; (3) The "hypersalience of evidence" theory suggests initial evidence is given disproportionate weight ; (4) Motivational accounts focus on affective responses to uncertainty as drivers of limited information gathering .

What evidence supports the "cost of information sampling" hypothesis versus the "noisy decision making" hypothesis?

Research provides evidence supporting the "cost of information sampling" hypothesis over the "noisy decision making" hypothesis, particularly in early psychosis. When information sampling costs were explicitly manipulated, computational modeling revealed that patients attributed higher costs to information sampling than controls, while groups were similar in estimates of the noise parameter . This contrasts with previous modeling work with chronic schizophrenia patients that suggested noisy decision-making was the primary driver of the JTC bias .

How do motivational factors influence DTD measurements in clinical and non-clinical populations?

Motivational factors like intolerance of uncertainty, need for closure, and self-esteem protection may contribute to experiencing information gathering as subjectively costly. In control participants, DTD correlates with distress and preoccupation subscales of delusion-proneness measures, suggesting emotional responses to uncertainty influence information gathering even in non-clinical populations . These relationships highlight the importance of considering affective and motivational factors alongside cognitive processes when interpreting DTD performance.

How can DTD paradigms be optimized for developmental or longitudinal research?

For developmental or longitudinal research, DTD paradigms should be designed with appropriate difficulty levels for different age groups, use engaging stimuli to maintain attention, minimize practice effects for repeated assessments, and include calibration procedures to account for developmental changes in cognitive abilities. Longitudinal designs should incorporate multiple time points to capture developmental trajectories and potential critical periods for intervention.

What are promising directions for integrating DTD measures with computational psychiatry approaches?

The integration of DTD measures with computational psychiatry offers several promising directions: (1) Developing more sophisticated models that incorporate both cognitive and motivational parameters; (2) Linking computational parameters to neurobiological mechanisms; (3) Using computational models to predict treatment response or illness progression; (4) Developing personalized interventions based on individual computational profiles; (5) Applying machine learning approaches to identify patterns in DTD data that may not be captured by current theoretical models .

How should researchers account for potential confounding factors in DTD studies?

Researchers should control for potential confounding factors including: (1) IQ and educational level, which may correlate with DTD performance ; (2) Depressive symptoms, which differ between clinical and control groups ; (3) Substance use, particularly smoking and recreational drugs which may be more prevalent in clinical populations ; (4) Medication effects; and (5) General cognitive impairments that might affect task comprehension or performance. These factors can be addressed through careful matching, statistical control, or specific exclusion criteria.

What are best practices for reporting DTD results in scientific publications?

Best practices include reporting comprehensive sample characteristics (including clinical measures, cognitive abilities, and demographics), detailed task parameters, both continuous DTD measures and categorical JTC classifications, effect sizes for group comparisons, computational modeling assumptions and validation procedures, and results from multiple experimental conditions or manipulations . Researchers should also clearly report how outliers were handled and which statistical corrections were applied.

How can researchers determine optimal sample sizes for DTD studies with clinical populations?

Power analyses for DTD studies should consider the typically non-normal distribution of DTD data, expected effect sizes based on previous literature, the number of experimental conditions, and potential participant attrition. Studies examining correlations between DTD and clinical measures typically require larger samples than those focusing on group differences. For clinical populations, researchers should also consider disease heterogeneity and potential subgroups when determining sample size.

What advancements in DTD task design could improve ecological validity?

To enhance ecological validity, researchers could develop naturalistic versions of DTD tasks that better reflect real-world decision-making contexts, incorporate social information or peer influence components, use virtual reality environments to increase immersion, implement adaptive difficulty levels that adjust to individual performance, and develop mobile applications for assessment in daily life contexts. These advancements would help bridge the gap between laboratory findings and real-world decision-making behavior.

Product Science Overview

Function and Mechanism

DTD1 is an aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. It also deacylates mischarged glycyl-tRNA (Ala), protecting cells against glycine mischarging by AlaRS (Alanyl-tRNA synthetase). The enzyme acts via tRNA-based rather than protein-based catalysis, rejecting L-amino acids rather than detecting D-amino acids in the active site . By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, DTD1 counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality .

Genetic Information

The DTD1 gene is located on chromosome 20 and is also known by several aliases, including C20orf88 and HARS2. The gene is involved in coding for the DTD1 protein, which is essential for the hydrolysis of D-tyrosyl-tRNA (Tyr) into D-tyrosine and free tRNA (Tyr) . The encoded protein binds the DNA unwinding element and plays a role in the initiation of DNA replication .

Clinical Significance

Mutations or malfunctions in the DTD1 gene can lead to errors in protein synthesis, which may result in various cellular dysfunctions. The enzyme’s role in maintaining the accuracy of tRNA charging is vital for cellular health and function.

Research and Applications

Recombinant forms of D-Tyrosyl-tRNA Deacylase 1 are used in research to study its function and potential therapeutic applications. Understanding the enzyme’s mechanism can lead to insights into genetic disorders related to protein synthesis errors and the development of targeted treatments.

For more detailed information, you can refer to resources like GeneCards and UniProt .

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