DTX55 Antibody

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Description

Introduction to DTX55 Antibody

The DTX55 Antibody (catalog # A12850-2) is a polyclonal rabbit-derived primary antibody specifically targeting the DDX55 protein, an ATP-dependent RNA helicase belonging to the DEAD-box family. It is validated for use in ELISA, immunohistochemistry (IHC), and Western blotting (WB), with applications in studying DDX55’s role in RNA processing, cellular regulation, and disease mechanisms. Below is a detailed analysis of its technical specifications, validation data, and research relevance.

Western Blotting (WB)

The antibody demonstrates high specificity in detecting DDX55 in SDS-PAGE-separated lysates. Validation includes:

  • Target Band: ~68 kDa (consistent with DDX55’s molecular weight).

  • Cellular Models: Tested in human and mouse cell lines (exact models unspecified).

  • Optimization: Recommended dilution ranges support flexible experimental setups .

Immunohistochemistry (IHC)

IHC validation highlights tissue-specific staining:

  • Tissue Tested: Human lung cancer (paraffin-embedded sections).

  • Staining Pattern: Cytoplasmic/nuclear localization, depending on cellular context.

  • Dilution: 1:100–1:300 for optimal signal-to-noise ratio .

ELISA

The antibody enables quantitative analysis of DDX55 in soluble samples:

  • Sensitivity: High-affinity binding (1:40,000 dilution).

  • Controls: Requires blocking peptide (AA 91–140) for specificity confirmation .

Functional Role

DDX55 (DEAD-box protein 55) is an ATP-dependent RNA helicase critical for:

  • RNA Processing: Unwinding RNA structures in splicing, translation, and RNA interference.

  • Cellular Regulation: Modulating stress responses and apoptosis.

Disease Relevance

While direct disease associations for DDX55 are under study, DEAD-box helicases are implicated in cancer (e.g., lung, breast) and neurological disorders, where dysregulated RNA metabolism occurs.

Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
14-16 week lead time (made-to-order)
Synonyms
DTX55 antibody; NIC3 antibody; At5g49130 antibody; K20J1.11Protein DETOXIFICATION 55 antibody; AtDTX55 antibody; Multidrug and toxic compound extrusion protein 55 antibody; MATE protein 55 antibody; Protein NOVEL ION CARRIER 3 antibody; Protein NIC3 antibody
Target Names
DTX55
Uniprot No.

Target Background

Database Links

KEGG: ath:AT5G49130

STRING: 3702.AT5G49130.1

UniGene: At.29803

Protein Families
Multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Subcellular Location
Membrane; Multi-pass membrane protein.

Q&A

What is SA55 Antibody and what is its target antigen?

SA55 is a novel broad-spectrum neutralizing monoclonal antibody specifically developed to target SARS-CoV-2. It has been formulated as an injectable treatment (SA55 injection) for both treatment and prevention of COVID-19. Unlike conventional antibodies with narrower neutralization profiles, SA55 was designed to provide broad-spectrum activity against multiple SARS-CoV-2 variants, making it particularly valuable in the evolving landscape of coronavirus mutations. The antibody specifically targets the spike protein of SARS-CoV-2, which is essential for viral entry into human cells .

What are the structural characteristics of SA55 Antibody?

While detailed structural information is not explicitly provided in the current literature, SA55 belongs to the class of monoclonal antibodies designed for therapeutic applications. Research into similar antibodies suggests it likely maintains the standard immunoglobulin structure with heavy and light chains forming antigen-binding regions specifically engineered to recognize SARS-CoV-2 spike protein epitopes. Modern antibody design techniques, such as those described in the DyAb methodology, may have been employed in its development to optimize binding affinity and specificity .

How does SA55 compare with other anti-SARS-CoV-2 antibodies?

SA55 represents a new generation of broadly neutralizing antibodies designed to address limitations of earlier antibody treatments. While specific comparative data is not provided in the search results, the development of SA55 as a broad-spectrum neutralizing antibody suggests improvements over earlier antibodies that lost efficacy against emerging variants. The extended half-life of 103 days is particularly notable, as this provides a significant advantage for prophylactic applications compared to antibodies with shorter circulation times .

What are the key pharmacokinetic parameters of SA55 Antibody?

According to recent phase II clinical trials, SA55 injection demonstrates favorable pharmacokinetic properties:

  • Half-life (t½): 103 days

  • Time to maximum concentration (Tmax): 12.6 days

  • Evaluation parameters: AUC0-∞, AUC0-t, and Cmax assessed using one-way ANOVA and the Power model
    This extended half-life makes SA55 particularly suitable for preventive applications against COVID-19, as it may provide long-lasting protection with a single administration .

What dosing considerations should researchers account for in experimental designs using SA55?

Based on the pharmacokinetic profile of SA55, researchers should consider its 103-day half-life and 12.6-day Tmax when designing experimental protocols. These parameters suggest that:

  • Single-dose administration may be sufficient for extended studies

  • Sampling protocols should account for the delayed peak concentration

  • Study durations may need to extend beyond 100 days to fully characterize effects

  • Dose-response relationships should be carefully established given the extended circulation time
    These considerations are particularly important for translational research aiming to bridge preclinical models with clinical applications .

What are recommended protocols for validating SA55 Antibody specificity?

While specific protocols for SA55 are not detailed in the available literature, researchers should follow standard antibody validation approaches with particular attention to:

  • Cross-reactivity testing against multiple coronavirus variants

  • Surface plasmon resonance (SPR) to determine binding kinetics

  • Neutralization assays with pseudotyped and live virus systems

  • Competition assays with known antibodies targeting different spike protein epitopes
    The DyAb research methodology suggests incorporating binding affinity measurements using surface plasmon resonance on a Biacore 8K machine at 37°C in HBS-EP+ buffer (10 mM Hepes, pH 7.4, 150 mM NaCl, 0.3mM EDTA and 0.05% vol/vol Surfactant P20). This approach enables accurate determination of the equilibrium dissociation constant (KD) using a 1:1 Langmuir binding model .

How should researchers optimize immunoassays using SA55 Antibody?

For optimal implementation of SA55 in research immunoassays, consider these methodological approaches:

  • Antibody capture techniques: Use Protein A chips for immobilization prior to antigen introduction

  • Binding kinetics assessment: Implement both single-cycle and multi-cycle SPR modes depending on experimental needs

  • Buffer optimization: Use standardized buffers such as HBS-EP+ to ensure consistent results

  • Regeneration conditions: Apply 10 mM glycine pH 1.5 for surface regeneration between measurements

  • Data analysis: Apply 1:1 Langmuir binding models for KD determination and log-transform to pKD values for reporting
    These approaches align with best practices documented for high-affinity monoclonal antibodies in research settings .

What expression systems are suitable for studying SA55 or similar antibodies?

Based on the methodology used for similar antibody research, the following expression systems have proven effective:

  • Transient expression: Expi293 cells for initial screening and small-scale production

  • Stable expression: CHO cells for larger-scale production, particularly for structural studies

  • Purification strategy: Initial capture using GammaBind Plus Sepharose followed by standard chromatography methods

  • Expression verification: SDS-PAGE and western blotting to confirm integrity and purity
    These methods have been successfully employed for antibody expression in current research and should be adaptable to SA55 studies .

How can computational modeling enhance SA55 Antibody research?

Modern antibody research increasingly incorporates computational approaches similar to those described in the DyAb framework. For SA55 and similar antibodies, researchers should consider:

  • Sequence-based property prediction: Utilize pre-trained language models to predict antibody properties from sequence data

  • Comparative embedding analysis: Apply convolutional neural networks to predict differences in binding affinity between closely related antibody sequences

  • Genetic algorithm optimization: Employ genetic algorithms to sample and identify novel mutation combinations that might enhance binding or stability

  • Integration with structural models: Leverage tools like ESMFold or SaProt to incorporate structural features into prediction models
    These computational approaches can significantly accelerate research by focusing experimental efforts on the most promising variants or applications .

What are the considerations for developing derivatives or improved versions of SA55 Antibody?

Researchers looking to improve upon SA55 or develop derivative antibodies should consider the framework demonstrated in recent antibody engineering studies:

  • Identify beneficial point mutations through systematic scanning approaches

  • Combine mutations that individually improve desired properties (e.g., binding affinity)

  • Use models like DyAb to predict the effects of mutation combinations

  • Focus on combinations with edit distances of 3-11 from the parent sequence

  • Validate predictions experimentally with priority given to designs predicted to improve target binding
    This approach has demonstrated success in generating antibodies with up to 50-fold improvements in binding affinity while maintaining high expression and binding rates (>85%) .

What analytical techniques should be employed for in-depth characterization of SA55 Antibody?

Comprehensive characterization of SA55 should include:

  • Binding kinetics: Surface plasmon resonance (SPR) measurements at physiologically relevant temperatures

  • Thermal stability: Differential scanning calorimetry and thermofluor assays to determine melting temperatures

  • Structural analysis: X-ray crystallography or cryo-EM in complex with target antigens

  • Specificity profiling: Cross-reactivity testing against related coronavirus variants

  • Functional assessment: Neutralization assays with pseudotyped and authentic virus systems
    These analytical techniques provide complementary information about antibody performance and mechanisms of action, essential for both basic research and translational applications .

What factors might affect SA55 Antibody efficacy in experimental systems?

Several factors could impact SA55 performance in research applications:

  • Storage conditions: Antibody stability may be compromised by improper temperature, pH, or freeze-thaw cycles

  • Sample matrix effects: Complex biological samples may contain interfering substances that affect binding

  • Target mutations: Emerging SARS-CoV-2 variants might exhibit reduced binding to SA55

  • Assay format limitations: Different detection methods (e.g., ELISA vs. SPR) may yield variable results due to principles similar to those observed with anti-DNA antibodies

  • Host factors: When used in vivo, host immune responses or metabolic differences may affect antibody performance
    Researchers should control for these variables through appropriate experimental design and controls .

How should researchers address variability in SA55 binding assays?

When encountering variability in SA55 binding assays, consider the following methodological approaches:

  • Standardize reagents: Use consistent lots of antibody and target antigen

  • Optimize assay conditions: Systematically adjust buffer composition, incubation times, and temperatures

  • Multiple detection methods: Confirm findings using orthogonal techniques (e.g., ELISA, SPR, BLI)

  • Internal controls: Include known antibody standards with established binding properties

  • Statistical analysis: Apply appropriate statistical methods to distinguish technical from biological variability
    These approaches help distinguish true biological findings from technical artifacts, improving reproducibility and data quality .

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