EIF5A Antibody

Eukaryotic Translation Initiation Factor 5A, Mouse Anti Human
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Description

Definition and Characteristics of EIF5A Antibody

EIF5A antibodies are specialized tools designed to detect and study the eukaryotic translation initiation factor 5A (eIF5A), a critical protein involved in mRNA translation elongation and termination. These antibodies are engineered to bind specifically to eIF5A, enabling its detection in various experimental contexts. Key characteristics include:

PropertyDetailsReferences
TargeteIF5A (17–18 kDa protein) with hypusine modification
Antibody Types- Monoclonal (e.g., AB01/2G8, 67214-1-Ig)
- Polyclonal (e.g., AF7558, 11309-1-AP)
Host SpeciesMouse, sheep, rabbit
Primary ApplicationsWestern blotting, immunofluorescence, IHC, ELISA

Applications in Research and Clinical Studies

EIF5A antibodies are pivotal in studying eIF5A’s roles in cellular processes and diseases. Below are key applications supported by experimental data:

Biological Roles of eIF5A

  • Translation Regulation: Required for elongation of polyproline motifs and termination of specific mRNAs, including those encoding IFNγ and cytotoxic T cell proteins .

  • Viral Replication: Essential for replication of RNA viruses (e.g., influenza, Ebola) by facilitating viral mRNA translation .

  • Autophagy: Mediates ATG3 translation, critical for autophagosome formation .

  • Immune Response: Regulates T cell survival and cytokine production (e.g., IFNγ) .

Clinical Relevance

Tumor TypeExpression PatternClinical CorrelationReferences
Hepatocellular Carcinoma (HCC)Overexpressed in 74.4% of HCC tissuesLinked to histological grade, clinical stage, and pT stage
Pancreatic Ductal Adenocarcinoma (PDAC)Promotes metastasis via RhoA/ROCK2 signalingInhibits migration, invasion, and lung metastasis

Technical Considerations

  • Detection Sensitivity: Monoclonal antibodies (e.g., AB01/2G8) detect ~17 kDa bands in Western blotting, while polyclonal antibodies (e.g., AF7558) show broader cross-reactivity .

  • Optimal Dilution:

    • Western Blotting: 1:1,000–1:50,000 (AB01/2G8) , 1 µg/mL (AF7558) .

    • Immunofluorescence: 1:400–1:1,600 (67214-1-Ig) .

eIF5A in Immune Function

  • T Cell Activation: Hypusinated eIF5A is dynamically regulated in naïve CD8+ T cells, enabling IFNγ production and cytotoxicity .

  • Senescence Surveillance: Regulates transcription factor EB (TFEB) synthesis in B cells and autophagy in aged T cells .

eIF5A in Disease Pathogenesis

  • Viral Pathogenesis: Inhibiting eIF5A hypusination (e.g., via GC7) suppresses viral mRNA translation and induces ER stress, enhancing interferon responses .

  • Cancer Metastasis: Promotes PDAC cell migration and lung metastasis by modulating RhoA/ROCK2 signaling .

Product Specs

Introduction
EIF5A is the only known protein containing the unusual amino acid hypusine, formed by the sequential action of deoxyhypusine synthase and deoxyhypusine hydroxylase using spermidine as a substrate. This protein is involved in the first step of peptide bond formation in translation; however, further evidence suggests that it acts as a universally conserved translation elongation factor. EIF5A modulation is linked to cell proliferation and cancer development. Increased EIF5A expression is observed in the peripheral blood mononuclear cells (PBMCs) of HIV-1 infected individuals. EIF5A regulates crucial cellular processes, including cell survival and senescence, by influencing the stability of specific mRNAs. Heat stress can lead to a decrease in EIF5A levels in human pancreatic cancer cells, suggesting that EIF5A stability plays a role in determining cell fate following severe heat stress.
Formulation
The antibody is supplied as a 1 mg/ml solution in phosphate-buffered saline (PBS) at pH 7.4, containing 0.1% sodium azide as a preservative.
Storage Procedures
For short-term storage (up to 1 month), the antibody can be stored at 4°C. For long-term storage, it is recommended to store the antibody at -20°C. Avoid repeated freeze-thaw cycles to maintain antibody stability.
Stability / Shelf Life
The antibody has a shelf life of 12 months when stored at -20°C and a shelf life of 1 month when stored at 4°C.
Applications
The EIF5A antibody has been validated for use in ELISA, Western blot, and Immunofluorescence assays to ensure its specificity and reactivity. However, it is essential to optimize the antibody concentration for each specific application to achieve optimal results. The recommended dilution range for Western blot and Immunofluorescence is 1:250 to 1:500. A starting dilution of 1:250 is recommended for initial experiments.
Synonyms
EIF-5A, EIF5A1, eIF5AI, MGC99547, MGC104255, EIF5A, Eukaryotic translation initiation factor 5A-1, eIF-5A-1, eIF-5A1, Eukaryotic initiation factor 5A isoform 1, eIF-4D, Rev-binding factor.
Purification Method
EIF5A antibody was purified from mouse ascitic fluids by protein-G affinity chromatography.
Type
Mouse Anti Human Monoclonal.
Clone
PAT2E9AT.
Immunogen
Anti-human EIF5A mAb, is derived from hybridization of mouse F0 myeloma cells with spleen cells from BALB/c mice immunized with recombinant human EIF5A amino acids 1-154 purified from E. coli.
Ig Subclass
Mouse IgG1 heavy chain and κ light chain.

Q&A

What is EIF5A and why is it significant in cellular biology?

EIF5A (eukaryotic translation initiation factor 5A) is an mRNA-binding protein primarily involved in translation elongation rather than initiation, despite its name. Its significance stems from being the only known protein containing hypusine, a unique amino acid formed through post-translational modification of a specific lysine residue. This hypusination is essential for cellular proliferation and responses to extracellular stressors . In vertebrates, there are two isoforms: eIF5A1 (constitutively expressed in all tissues) and eIF5A2 (primarily expressed in gonads) . The protein plays crucial roles in various cellular processes and has been proposed as a potential target for pharmacologic therapy in conditions like infections, cancer, and obesity .

What types of EIF5A antibodies are available for research applications?

Several types of EIF5A antibodies are available for research, including:

  • Mouse monoclonal antibodies:

    • Clone 4E10F6 (ab204939) - Suitable for WB, IHC-P, Flow Cytometry; reacts with human samples

    • Clone 67214-1-Ig - Validated for WB, IF/ICC, ELISA; shows reactivity with human, mouse, and rat samples

  • Rabbit antibodies:

    • Polyclonal antibody (11309-1-AP) - Applicable for WB, IHC, IF/ICC, ELISA; reacts with human, mouse, rat samples

    • Monoclonal antibody D8L8Q (#20765) - From Cell Signaling Technology

  • Specialized antibodies:

    • IU-88 - A novel polyclonal antibody specifically recognizing the hypusinated form of eIF5A

These antibodies vary in their specificity, reactivity with different species, and optimal applications, allowing researchers to select the most appropriate tool for their specific experimental needs.

What is the difference between antibodies that detect total eIF5A versus hypusinated eIF5A?

The key difference lies in epitope specificity and the biological information they provide:

Hypusine-specific antibodies (such as IU-88) selectively recognize only the hypusinated or deoxyhypusinated forms of eIF5A. These specialized antibodies bind specifically to the modified lysine residue (hypusine) or its immediate surrounding region. They provide crucial information about the functional state of eIF5A, as only hypusinated eIF5A is biologically active .

In experimental contexts, total eIF5A antibodies help assess expression levels, while hypusine-specific antibodies reveal the proportion of eIF5A that is post-translationally modified and functionally active. The IU-88 antibody, for example, has been characterized to specifically recognize either deoxyhypusine or hypusine forms of eIF5A in vitro and the hypusinated form in cellular extracts .

What are the optimal applications for different types of eIF5A antibodies?

Different eIF5A antibodies demonstrate optimal performance in specific applications based on their characteristics:

Antibody TypeOptimal ApplicationsRecommended DilutionsSpecies Reactivity
Mouse monoclonal [4E10F6] (ab204939)Western Blot, IHC-P, Flow CytometryWB: 1/500-1/2000Human
Mouse monoclonal (67214-1-Ig)Western Blot, IF/ICC, ELISAWB: 1:5000-1:50000, IF/ICC: 1:400-1:1600Human, Mouse, Rat
Rabbit polyclonal (11309-1-AP)Western Blot, IHC, IF/ICC, ELISAWB: 1:5000-1:50000, IHC: 1:50-1:500, IF/ICC: 1:50-1:500Human, Mouse, Rat
Hypusine-specific (IU-88)Western Blot, ImmunocytochemistryExperiment-dependentHuman, potentially others

For optimal results, consider these application-specific recommendations:

  • Western Blot: Mouse monoclonal antibodies typically provide cleaner bands with less background. The expected molecular weight for eIF5A is approximately 18 kDa .

  • Immunohistochemistry: Rabbit polyclonal antibodies often provide stronger signals in fixed tissues. For 11309-1-AP, antigen retrieval with TE buffer pH 9.0 is recommended, though citrate buffer pH 6.0 may also work .

  • Immunofluorescence: Both monoclonal and polyclonal antibodies work well; selection should be based on species compatibility with other antibodies in multi-labeling experiments.

  • Functional studies: For assessing the active form of eIF5A, hypusine-specific antibodies like IU-88 are essential .

How can I validate the specificity of an eIF5A antibody in my experimental system?

Validating antibody specificity is crucial for reliable results. For eIF5A antibodies, implement these validation approaches:

  • Positive controls: Use cell lines known to express eIF5A, such as HeLa, HEK-293T, NIH/3T3, or PC-3 cells .

  • Molecular weight verification: Confirm detection at the expected molecular weight (18 kDa for endogenous eIF5A) .

  • Genetic validation:

    • siRNA/shRNA knockdown: Compare antibody signal between control and eIF5A-depleted samples

    • Overexpression: Transfect cells with eIF5A expression vectors and verify increased signal intensity

    • Mutant controls: Use eIF5A(K50A) mutant (which cannot be hypusinated) as a negative control for hypusine-specific antibodies

  • Hypusination-specific validation (for hypusine-specific antibodies):

    • Pharmacological inhibition: Treat cells with GC7 (a DHS inhibitor that prevents hypusination) and verify decreased signal

    • In vitro modification assay: For recombinant eIF5A, perform reactions with DHS, DHH, and spermidine to generate hypusinated protein as a positive control

  • Cross-reactivity assessment: Test the antibody against samples from multiple species if working with non-human models.

  • Multiple detection methods: Confirm findings using different techniques (e.g., WB, IF, IHC) to ensure consistent detection.

For hypusine-specific antibodies like IU-88, additional validation can include co-transfection with DHS (deoxyhypusine synthase) to enhance hypusination in cell types where DHS may be limiting .

What are the recommended protocols for detecting eIF5A in different sample types?

Optimal protocols for eIF5A detection vary by sample type and application:

For protein lysates (Western Blot):

  • Sample preparation:

    • Cell lysis: Use RIPA buffer with protease inhibitors

    • Protein quantification: Bradford or BCA assay

    • Loading: 20-30 μg total protein per lane

  • Electrophoresis and transfer:

    • 12-15% SDS-PAGE (to resolve the 18 kDa eIF5A protein)

    • Transfer to PVDF or nitrocellulose membrane (0.2 μm pore size recommended)

  • Immunoblotting:

    • Blocking: 5% non-fat milk or BSA in TBST, 1 hour at room temperature

    • Primary antibody incubation: Use recommended dilutions (1:5000-1:50000 for Proteintech antibodies)

    • Secondary antibody: HRP-conjugated at 1:5000-1:10000

    • Detection: ECL or other chemiluminescent substrates

For tissue sections (IHC):

  • Fixation: 10% neutral buffered formalin

  • Antigen retrieval: TE buffer pH 9.0 (recommended for 11309-1-AP) or citrate buffer pH 6.0

  • Primary antibody: Dilute 1:50-1:500, incubate overnight at 4°C

  • Detection: Standard polymer detection system with DAB or other chromogen

For cultured cells (IF/ICC):

  • Fixation: 4% paraformaldehyde (10 minutes)

  • Permeabilization: 0.1-0.5% Triton X-100 in PBS (5-10 minutes)

  • Blocking: 1-5% BSA in PBS (1 hour)

  • Primary antibody: Dilute 1:50-1:500 for polyclonal or 1:400-1:1600 for monoclonal antibodies

  • Secondary antibody: Fluorophore-conjugated, species-appropriate

  • Counterstain: DAPI for nuclei

  • Mounting: Anti-fade medium

For hypusinated eIF5A detection:
When using hypusine-specific antibodies like IU-88, include appropriate controls (GC7-treated samples) and consider cell type-specific factors (e.g., DHS availability may be limiting in some cell types like 293T cells but not in INS-1 β cells) .

How can eIF5A antibodies be used to study the dynamics of hypusination in different cellular contexts?

Studying hypusination dynamics requires sophisticated approaches combining hypusine-specific antibodies with other methods:

  • Time-course analysis after inhibition/stimulation:

    • Treat cells with GC7 (DHS inhibitor) to block hypusination, then remove the inhibitor and monitor the restoration of hypusinated eIF5A using IU-88 or other hypusine-specific antibodies

    • Time-resolved Western blotting with parallel detection of total eIF5A and hypusinated eIF5A

    • Quantify the hypusine/total eIF5A ratio to assess modification efficiency

  • Cell-type comparative analysis:

    • Different cell types show varying hypusination capacity. For example, research shows that DHS is limiting in 293T cells but not in INS-1 β cells

    • Design experiments that compare hypusination levels across tissue/cell types using Western blot or immunofluorescence with hypusine-specific antibodies

    • Include co-transfection with DHS to assess whether DHS availability limits hypusination in specific cell types

  • Stress response studies:

    • Expose cells to various stressors (oxidative stress, nutrient deprivation, etc.)

    • Monitor changes in hypusination status and correlate with cellular responses

    • Compare stress effects across normal and diseased cell models

  • Combined immunoprecipitation approaches:

    • Perform sequential immunoprecipitation with hypusine-specific and total eIF5A antibodies

    • Analyze eIF5A-interacting proteins under different conditions to identify hypusination-dependent interactions

    • Use proximity ligation assays to visualize interactions of hypusinated eIF5A with partner proteins in situ

  • Pulse-chase analysis:

    • Label newly synthesized proteins with metabolic labels

    • Track the kinetics of eIF5A hypusination using timecourse immunoprecipitation with hypusine-specific antibodies

These approaches can reveal how hypusination is regulated in response to developmental cues, stress conditions, or in disease states where translation regulation is altered.

What are the key considerations when studying eIF5A isoforms (eIF5A1 vs eIF5A2) with antibodies?

Studying eIF5A isoforms presents several challenges and requires careful experimental design:

  • Antibody specificity challenges:

    • eIF5A1 and eIF5A2 share approximately 84% amino acid sequence identity

    • Most commercially available antibodies may cross-react with both isoforms

    • Verify isoform specificity through:

      • Testing on recombinant proteins of each isoform

      • Using tissues with differential expression (eIF5A1 is ubiquitous; eIF5A2 is mainly in gonads)

      • Validation in knockout/knockdown systems specific to each isoform

  • Expression pattern considerations:

    • eIF5A1 is constitutively expressed in all tissues, making it easier to detect

    • eIF5A2 has restricted expression (mainly gonads) and may require more sensitive detection methods

    • In cancer tissues, eIF5A2 is often overexpressed and can be detected more readily

  • Experimental design strategies:

    • Use RT-qPCR to confirm transcript levels of each isoform before protein analysis

    • Consider isoform-specific siRNA knockdown to validate antibody specificity

    • For tissues with low eIF5A2 expression, consider enrichment strategies (e.g., immunoprecipitation before Western blot)

  • Functional analysis considerations:

    • Design experiments that can distinguish functional differences between isoforms

    • Consider the different roles of each isoform in normal physiology versus disease states

    • When studying hypusination, remember both isoforms can be hypusinated

  • Subcellular localization studies:

    • Use high-resolution imaging with validated isoform-specific antibodies

    • Consider co-staining with organelle markers to detect differential localization

A methodologically sound approach would involve using multiple antibodies targeting different epitopes, combined with genetic manipulation of each isoform to establish specificity and reliability of the detection system.

How can eIF5A antibodies be used to investigate the role of hypusinated eIF5A in disease models?

eIF5A antibodies provide powerful tools for investigating disease associations through several methodological approaches:

  • Cancer research applications:

    • Compare hypusination levels between normal and tumor tissues using hypusine-specific antibodies like IU-88

    • Correlate eIF5A and/or hypusinated eIF5A levels with cancer stage, prognosis, or treatment response

    • Assess eIF5A2 overexpression in cancers using isoform-specific antibodies, as eIF5A2 has been implicated as an oncogene

    • Methodology: Tissue microarray immunohistochemistry with quantitative image analysis

  • Viral infection studies:

    • Monitor changes in eIF5A hypusination during viral infections, as eIF5A serves as a cellular cofactor for HTLV-1 Rex and HIV-1 Rev proteins

    • Track the interaction between viral proteins and eIF5A using co-immunoprecipitation with eIF5A antibodies

    • Methodology: Time-course immunoblotting with both total and hypusine-specific antibodies in infected versus uninfected cells

  • Metabolic disorders research:

    • Assess changes in hypusination in obesity and diabetes models, where translation regulation may be altered

    • Examine the relationship between polyamine metabolism (required for hypusination) and disease progression

    • Methodology: Western blot analysis of tissue samples with parallel detection of hypusination enzymes (DHS, DOHH)

  • Pharmacological intervention studies:

    • Use hypusine-specific antibodies to monitor the efficacy of DHS inhibitors (like GC7) or other drugs targeting the hypusination pathway

    • Assess downstream effects of hypusination inhibition on disease-relevant cellular processes

    • Methodology: Dose-response and time-course studies combining Western blot, IF, and functional assays

  • Multi-parametric analysis in patient samples:

    • Combine eIF5A/hypusinated eIF5A detection with markers of cellular stress, inflammation, or disease progression

    • Develop prognostic/diagnostic panels that include eIF5A status

    • Methodology: Multiplex immunofluorescence or sequential immunohistochemistry

For robust disease-related studies, researchers should consider longitudinal sampling when possible and include proper controls (both disease and treatment controls). Statistical analysis should account for patient heterogeneity and potential confounding factors in the interpretation of eIF5A-related findings.

What are common issues encountered when using eIF5A antibodies and how can they be resolved?

Researchers frequently encounter several technical challenges when working with eIF5A antibodies:

  • High background in Western blots:

    • Problem: Non-specific binding creating diffuse signal

    • Solutions:

      • Increase blocking time/concentration (try 5% BSA instead of milk)

      • Dilute primary antibody further (especially for high-sensitivity antibodies)

      • Include 0.1% Tween-20 in antibody dilution buffer

      • Try shorter incubation times at room temperature instead of overnight at 4°C

  • Multiple bands in Western blot:

    • Problem: Detection of post-translational modifications or degradation products

    • Solutions:

      • Use freshly prepared lysates with complete protease inhibitors

      • For hypusine-specific antibodies, verify with GC7-treated controls to identify which band represents hypusinated eIF5A

      • Run longer gels (15-20%) for better resolution of the small (18 kDa) eIF5A protein

      • Consider phosphatase treatment if phosphorylation may contribute to band shifts

  • Weak signal from hypusine-specific antibodies:

    • Problem: Limited hypusination or technical issues

    • Solutions:

      • For cell lines with limiting DHS (like 293T), co-transfect with DHS expression vector

      • Optimize cell lysis to preserve the hypusine modification

      • Consider signal amplification methods like HRP-polymer detection systems

      • Increase protein loading while maintaining good electrophoretic separation

  • Inconsistent immunofluorescence results:

    • Problem: Variable signal intensity or localization patterns

    • Solutions:

      • Standardize fixation time precisely (overfixation can mask epitopes)

      • Test different permeabilization reagents and conditions

      • For hypusine-specific antibodies, include proper controls (e.g., GC7-treated cells)

      • Use confocal microscopy with Z-stacking to assess true signal distribution

  • Poor reproducibility between experiments:

    • Problem: Variable results across repeated experiments

    • Solutions:

      • Standardize lysate preparation methods rigorously

      • Prepare larger antibody aliquots to reduce freeze-thaw cycles

      • Include appropriate loading controls and normalize signal across blots

      • Consider internal standards (e.g., recombinant eIF5A) for quantitative comparisons

For hypusine-specific antibodies like IU-88, remember that cell type-specific factors (such as DHS levels) can significantly impact results, requiring customized optimization for each experimental system .

How should contradictory results between different eIF5A antibody detection methods be interpreted?

When facing contradictory results between different detection methods using eIF5A antibodies, follow this systematic approach to interpretation:

  • Understand epitope-specific differences:

    • Different antibodies may recognize distinct epitopes on eIF5A

    • Hypusine-specific antibodies (like IU-88) detect only modified eIF5A while total eIF5A antibodies detect all forms

    • Post-translational modifications might mask certain epitopes in one application but not another

  • Application-specific considerations:

    • Western blot: Denaturating conditions expose all epitopes but may destroy conformation-dependent epitopes

    • IHC/IF: Fixation and antigen retrieval can differentially affect epitope accessibility

    • Flow cytometry: Measures intact cells, potentially limiting access to intracellular epitopes

  • Methodological approach to resolving contradictions:

    • Systematic validation: Test multiple antibodies targeting different epitopes

    • Genetic controls: Use siRNA knockdown or overexpression systems

    • Orthogonal techniques: Confirm findings using non-antibody methods (e.g., mass spectrometry)

    • Control for hypusination status: Compare GC7-treated (hypusination inhibited) versus untreated samples

  • Experimental design to resolve conflicts:

    • Sequential application: Apply multiple detection methods to the same sample

    • Parallel controls: Include positive and negative controls in each method

    • Titration experiments: Test multiple antibody concentrations to rule out saturation effects

    • Cross-validation: Have different laboratory members repeat critical experiments

  • Biological interpretation framework:

    • Consider cell type-specific factors (e.g., DHS levels vary between cell types)

    • Account for dynamic cellular processes (hypusination status changes with conditions)

    • Evaluate subcellular compartmentalization (eIF5A may localize differently depending on function)

When reporting contradictory results, transparently describe all methods, antibodies used, and potential limitations. This approach not only enhances scientific rigor but may uncover previously unknown aspects of eIF5A biology.

What are best practices for quantitative analysis of eIF5A and hypusinated eIF5A levels?

Quantitative analysis of eIF5A and its hypusinated form requires rigorous methodology to ensure accuracy and reproducibility:

  • Western blot quantification best practices:

    • Sample preparation standardization:

      • Consistent lysis buffer composition and protein extraction protocol

      • Precise protein quantification (duplicate measurements)

      • Equal loading verified by total protein staining (REVERT, Ponceau S)

    • Technical considerations:

      • Use mid-range exposures avoiding saturation

      • Include calibration curves with recombinant protein when possible

      • Apply appropriate normalization (total protein preferred over single housekeeping proteins)

    • Analysis methodology:

      • Calculate hypusine/total eIF5A ratio to assess modification efficiency

      • Use triplicate biological samples minimum

      • Apply appropriate statistical tests for comparisons

  • Immunofluorescence quantification approaches:

    • Image acquisition standards:

      • Fixed exposure settings across all comparable samples

      • Z-stack acquisition for accurate signal integration

      • Multichannel imaging with appropriate controls for bleed-through

    • Analysis methods:

      • Single-cell analysis rather than field averages when possible

      • Automated segmentation of subcellular compartments

      • Colocalization analysis for functional studies

    • Quantitative parameters:

      • Mean fluorescence intensity

      • Nuclear/cytoplasmic signal ratio

      • Correlation with functional markers

  • Flow cytometry analysis:

    • Standardization:

      • Use calibration beads for consistent instrument settings

      • Include fluorescence-minus-one (FMO) controls

    • Gating strategy:

      • Exclude cell doublets and debris

      • Subpopulation analysis when relevant

    • Parameters to report:

      • Median fluorescence intensity

      • Percent positive cells

      • Ratio of hypusinated/total eIF5A

  • Normalization strategies:

    • For Western blot:

      • Total protein normalization (preferred)

      • Multiple housekeeping proteins if total protein staining is unavailable

    • For cellular imaging:

      • Cell area or volume normalization

      • Nuclear counterstain as reference

    • For multiple experiments:

      • Include common reference sample across experiments

      • Report relative rather than absolute values when combining experiments

  • Reporting standards:

    • Clearly state quantification method, software used, and statistical approach

    • Include representative images with scale bars

    • Present both raw data and normalized results when possible

    • Report both technical and biological replicate numbers

When specifically quantifying hypusinated eIF5A, always include appropriate controls (GC7-treated samples, K50A mutants) to validate the specificity of the signal being quantified .

How are eIF5A antibodies being used to explore the role of eIF5A in regulating specific mRNA translation?

Cutting-edge research is employing eIF5A antibodies to uncover its selective functions in mRNA translation through several sophisticated approaches:

  • Translational Complex Immunoprecipitation (IP) Methods:

    • Polysome IP: Using eIF5A antibodies to pull down polysome-associated complexes followed by RNA-seq to identify mRNAs whose translation depends on eIF5A

    • Cross-linking and Immunoprecipitation (CLIP): UV cross-linking RNA-protein complexes before IP with eIF5A antibodies to identify directly bound mRNAs

    • Proximity-dependent biotinylation: Expressing BioID-eIF5A fusion proteins to identify proteins in close proximity to eIF5A during translation

  • Differential Analysis Approaches:

    • Comparing translation efficiency of mRNAs (by ribosome profiling) in the presence and absence of hypusinated eIF5A (using GC7 treatment)

    • Using antibodies against both total and hypusinated eIF5A to fractionate cellular lysates and analyze associated mRNAs

    • Correlating changes in protein synthesis (by pulse labeling) with hypusination levels detected by antibodies like IU-88

  • Structural and Functional Studies:

    • Using eIF5A antibodies in structural studies (e.g., cryo-EM) to visualize eIF5A's position in translation complexes

    • Combining antibody-based detection with site-specific labeling techniques to track eIF5A movement during translation elongation

    • Employing hypusine-specific antibodies to assess how post-translational modifications affect eIF5A's interactions with the ribosome and other factors

  • Disease-relevant Translation Regulation:

    • Investigating how viral infections impact eIF5A's role in translation using both total and hypusine-specific antibodies

    • Examining altered translation of specific mRNAs in cancer models where eIF5A or eIF5A2 is overexpressed

    • Correlating stress-induced changes in hypusination with preferential translation of stress-response mRNAs

These approaches are revealing that eIF5A appears to preferentially facilitate the translation of mRNAs containing consecutive proline codons or other challenging sequence motifs, highlighting its specialized role in translation elongation rather than initiation.

What novel techniques are being developed to study eIF5A post-translational modifications beyond hypusination?

Researchers are implementing innovative techniques to study the full spectrum of eIF5A post-translational modifications:

  • Mass Spectrometry-based Approaches:

    • Top-down proteomics: Analyzing intact eIF5A protein to maintain all modification relationships

    • Middle-down proteomics: Limited proteolysis followed by MS analysis to better characterize hypusination in context with other modifications

    • Parallel reaction monitoring (PRM): Targeted MS approach to quantify specific modified forms of eIF5A

    • Antibody-enrichment MS: Using eIF5A antibodies to enrich the protein before MS analysis for increased sensitivity

  • Antibody-based Multi-modification Detection:

    • Sequential immunoprecipitation: Using hypusine-specific antibodies for first IP, followed by enrichment with antibodies against other modifications

    • Multiplex immunofluorescence: Simultaneous detection of hypusinated eIF5A with other PTM-specific antibodies

    • Proximity ligation assays: Detecting co-occurrence of hypusination with other modifications on the same eIF5A molecule

  • Genetic and Chemical Biology Approaches:

    • Site-specific incorporation of PTM mimetics: Using amber suppression technology to introduce PTM-mimicking amino acids

    • Development of antibodies against multiple eIF5A modifications: Beyond hypusine, antibodies targeting phosphorylation, acetylation, or ubiquitination sites

    • Chemical probes: Small molecules that selectively bind modified forms of eIF5A for visualization or pull-down

  • Functional Correlation Methods:

    • FRET/BRET biosensors: Engineered eIF5A constructs that report on conformational changes associated with specific modifications

    • Real-time tracking: Following PTM dynamics using antibodies conjugated to quantum dots or other stable fluorophores

    • Modification-specific interactome analysis: Using antibodies to isolate differently modified eIF5A pools and identify differential protein interactions

These emerging techniques are revealing that eIF5A undergoes several modifications beyond hypusination, including phosphorylation, acetylation, and potentially ubiquitination, which may fine-tune its function in different cellular contexts and create a complex "PTM code" that regulates its activity.

How can researchers integrate eIF5A antibody-based detection with other omics approaches for systems-level understanding?

Integration of eIF5A antibody-based detection with multi-omics approaches enables comprehensive systems-level understanding:

  • Integrative Multi-omics Frameworks:

    • Antibody-based proteomics + Transcriptomics: Correlate eIF5A protein levels/modifications with mRNA expression profiles

    • Translatomics integration: Combine ribosome profiling data with eIF5A and hypusinated eIF5A immunoprecipitation to identify translationally regulated targets

    • Antibody-based spatial proteomics + Metabolomics: Map the subcellular distribution of eIF5A in relation to metabolic activity using multiplexed imaging and metabolite profiling

  • Methodological Integration Strategies:

    • Sequential analysis pipeline:

      • Antibody-based FACS sorting of cells based on eIF5A modification status

      • Subsequent multi-omics analysis of sorted populations (transcriptomics, proteomics, metabolomics)

    • Parallel multi-modal data collection:

      • Simultaneous quantification of eIF5A modifications and global protein synthesis rates

      • Correlation with transcriptome and translatome data from the same samples

  • Computational Analysis Approaches:

    • Network analysis: Placing eIF5A within protein-protein interaction networks using antibody-based interactome data

    • Integrative visualization tools: Developing dashboards that display eIF5A modification status alongside transcriptomic and proteomic changes

    • Machine learning models: Training algorithms to predict cellular outcomes based on eIF5A modification patterns detected by specific antibodies

  • Temporal and Perturbation-based Integration:

    • Time-course studies: Following eIF5A modifications using antibodies while simultaneously tracking transcriptome and proteome changes

    • Perturbation analysis: Systematic inhibition of hypusination (using GC7) or eIF5A depletion combined with multi-omics profiling

    • Drug response profiling: Using hypusine-specific antibodies to monitor eIF5A modification alongside transcriptional and translational responses to therapeutic agents

  • Single-cell Multi-modal Analysis:

    • Single-cell antibody-based detection: Using hypusine-specific antibodies in single-cell proteomics workflows

    • Multi-modal single-cell analysis: Combining antibody-based detection of eIF5A with single-cell transcriptomics or metabolomics

    • Spatial transcriptomics integration: Correlating spatial distribution of modified eIF5A with spatially resolved transcriptomes

These integrative approaches provide a holistic view of how eIF5A and its post-translational modifications function within the broader cellular context, revealing its role in coordinating translational responses to various stimuli and how its dysregulation contributes to disease states.

Product Science Overview

Introduction

Eukaryotic Translation Initiation Factor 5A (eIF5A) is a highly conserved protein found in eukaryotic cells and archaea. It plays a crucial role in the initiation of translation, a fundamental process in protein synthesis. eIF5A is unique due to its post-translational modification, known as hypusination, which is essential for its activity .

Discovery and Nomenclature

The protein was first identified in 1976 by Kemper et al. as two factors, IF-M2Bα and IF-M2Bβ, required for hemoglobin synthesis in rabbit reticulocytes. It was later renamed eIF5A following the introduction of a uniform nomenclature for initiation factors .

Structure and Conservation

eIF5A is a small, acidic protein with a molecular weight of approximately 17 kDa and consists of 157 amino acids. It is highly conserved across species, including plants, indicating its vital physiological role. This conservation suggests that eIF5A has been maintained throughout evolution due to its essential functions .

Function and Mechanism

eIF5A is involved in various cellular processes, including:

  • Translation Elongation and Termination: eIF5A promotes translation elongation and termination, particularly in ribosome stalling at specific amino acid sequences. It binds between the exit (E) and peptidyl (P) sites of the ribosome, facilitating the rescue of stalled ribosomes .
  • Hypusination: The unique post-translational modification of eIF5A, hypusination, involves the addition of a hypusine residue, which is critical for its function. This modification is catalyzed by deoxyhypusine synthase (DHS) and deoxyhypusine hydroxylase (DOHH) .
  • Cell Cycle Progression and Actin Dynamics: eIF5A is also implicated in cell cycle progression, actin dynamics, mRNA decay, and stress response pathways .
Physiological Roles and Clinical Implications

eIF5A has been studied extensively for its role in various physiological processes and diseases:

  • Cancer: eIF5A is involved in the development and progression of cancers, particularly through its isoform A2, which is mainly expressed in cancer cells. In contrast, isoform A1 is ubiquitously expressed in normal cells .
  • Ischemic Tolerance and Organ Transplantation: eIF5A’s role in ischemic tolerance and metabolic adaptation has opened up potential clinical applications, such as organ transplantation, myocardial infarction, and stroke .
  • Genetic Diseases: Recent genomic and transcriptomic studies have revealed the involvement of eIF5A in genetic diseases, highlighting its potential as a therapeutic target .
Mouse Anti-Human eIF5A Antibodies

Mouse anti-human eIF5A antibodies are used in research to study the protein’s function and its role in various diseases. These antibodies are crucial for detecting and quantifying eIF5A in different experimental settings, aiding in the understanding of its physiological and pathological roles.

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