ERD2B Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (Made-to-order)
Synonyms
ERD2B antibody; ERD2.2 antibody; At3g25040ER lumen protein-retaining receptor B antibody
Target Names
ERD2B
Uniprot No.

Target Background

Function
ERD2B antibody targets a protein essential for the specificity of the luminal endoplasmic reticulum (ER) protein retention system. It is required for the retrograde transport of calreticulin-3 (CRT3) from the Golgi apparatus to the ER. Specifically, ERD2B is necessary for the proper function of the elongation factor Tu receptor (EFR) in response to the pathogen-associated molecular pattern (PAMP) elf18.
Database Links

KEGG: ath:AT3G25040

STRING: 3702.AT3G25040.1

UniGene: At.27421

Protein Families
ERD2 family
Subcellular Location
Golgi apparatus membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein.

Q&A

What is ERBB2 and why is it an important therapeutic target?

ERBB2 (also known as HER2) is an oncogene encoding human epidermal growth factor receptor 2, a receptor tyrosine kinase that belongs to the EGFR family. ERBB2 plays a crucial role in cell growth signaling pathways and is frequently amplified in approximately 15% of advanced esophagogastric and gastric cancers, as well as in a significant percentage of breast cancers. When amplified, ERBB2 causes overexpression of HER2 protein, triggering oncogenesis and tumor progression through constitutive activation of downstream signaling pathways . ERBB2 represents a major vulnerability for cancer cells, making it an ideal therapeutic target as evidenced by the clinical success of antibodies like trastuzumab, which binds to domain IV of the receptor, and pertuzumab, which targets domain II .

How do researchers distinguish between different anti-ERBB2 antibody types?

Researchers distinguish between anti-ERBB2 antibodies primarily based on their binding epitopes and mechanisms of action. Trastuzumab, the first approved anti-ERBB2 therapeutic antibody, recognizes the juxtamembrane region of domain IV of the receptor. Pertuzumab, another humanized antibody, binds near the center of domain II. The novel antibody H2-18 targets domain I of the ERBB2 molecule, as determined by crystallographic analysis . Additionally, antibodies can be categorized by their structural characteristics (fully human, humanized, or chimeric), their functional effects (inhibition of dimerization, induction of programmed cell death, immune recruitment), and their derivatives (e.g., antibody-drug conjugates) . Each antibody's unique binding properties result in distinct biological effects, explaining why certain antibodies may remain effective when others fail .

What gene coalterations affect response to anti-ERBB2 therapies?

Gene coalterations in the HER2 signaling pathway significantly impact response to anti-ERBB2 therapies, often contributing to intrinsic or acquired resistance. Comprehensive genomic profiling studies have identified several key coalterations that negatively affect trastuzumab efficacy. These include alterations in oncogenes and tumor-suppressor genes within the RTK/RAS/PI3K signaling pathways, cell cycle regulators such as cyclin E1 (CCNE1) and cyclin-dependent kinase inhibitor 2A (CDKN2A), as well as mutations in TP53 and MYC . Interestingly, ERBB2 amplification is often mutually exclusive with other oncogenic alterations in gastric (83.3%) and colorectal (60%) cancer patients, underscoring its likely role as the primary driver alteration in these settings . The presence of gene coamplification in the HER2 signaling pathway has been negatively associated with progression-free survival in patients treated with trastuzumab-combined chemotherapy, suggesting that these molecular changes may activate alternative pathways that bypass HER2 inhibition .

What is the prevalence of ERBB2 sequence variants and their clinical significance?

While ERBB2 amplification has been extensively studied, ERBB2 sequence variants (SNVs) represent another important but less characterized alteration. Recent studies have identified ERBB2 SNVs in approximately 5.8% of solid tumor patients . A small proportion of patients with HER2-positive advanced gastric cancer harbor ERBB2 sequence variants, and those with high variant allele frequency demonstrate poorer prognosis . This suggests that certain ERBB2 mutations may confer resistance to standard HER2-targeted therapies or affect downstream signaling in ways that promote tumor progression despite HER2 inhibition. These findings indicate that comprehensive molecular profiling that includes both copy number analysis and mutation detection may provide more accurate predictive information than testing for ERBB2 amplification alone . Future therapeutic approaches may need to be tailored based on the specific ERBB2 alterations present in individual tumors.

How can researchers optimize ERBB2 antibody selection for specific experimental applications?

Selecting the appropriate anti-ERBB2 antibody requires careful consideration of the specific experimental application. For sandwich immunoassays, researchers should choose antibodies targeting non-overlapping epitopes with high specificity and affinity . For immunohistochemistry or immunocytochemistry, biotinylated antibodies like BAF1129 have demonstrated efficacy when used at appropriate concentrations (e.g., 10 μg/mL) and incubation conditions (room temperature for 3 hours) . When studying receptor dynamics or signaling mechanisms, researchers should consider antibodies targeting specific domains of ERBB2 that may differentially affect receptor dimerization or downstream pathway activation. For instance, while trastuzumab primarily inhibits ERBB2 homodimers and ligand-independent heterodimers, pertuzumab efficiently blocks ligand-dependent ERBB2-ERBB3 complex formation . Novel antibodies like H2-18 that target domain I may offer unique advantages for studying programmed cell death induction mechanisms . Optimal dilutions should be determined empirically for each application through careful titration experiments.

What methodological approaches can detect ERBB2 amplification in liquid biopsies?

The detection of ERBB2 amplification in liquid biopsies represents an emerging field with significant clinical potential. Next-generation sequencing (NGS) of cell-free DNA (cfDNA) has demonstrated efficacy in identifying ERBB2 copy number alterations non-invasively . This approach typically involves DNA extraction from plasma samples, library preparation with unique molecular identifiers to reduce false positives, and bioinformatic analysis to accurately determine copy number gains against a background of wild-type DNA. The sensitivity of cfDNA detection depends on technical factors such as sequencing depth, bioinformatic algorithms, and biological factors including tumor shedding rates and the fraction of tumor-derived DNA in circulation. Complementary approaches include digital PCR for targeted detection of known ERBB2 amplifications and protein-based assays measuring circulating HER2 extracellular domain levels . Validation studies comparing cfDNA findings with matched tissue samples are essential, particularly when using results to guide treatment decisions, as concordance can vary based on disease stage, tumor heterogeneity, and timing of sample collection relative to treatment .

How should researchers evaluate programmed cell death induced by anti-ERBB2 antibodies?

Evaluating programmed cell death (PCD) induced by anti-ERBB2 antibodies requires a multi-parameter approach to distinguish between different cell death mechanisms. While some anti-ERBB2 antibodies like H2-18 potently induce PCD, others like trastuzumab and pertuzumab exhibit weak PCD-inducing activity . Researchers should employ complementary methods including: (1) Annexin V/PI staining with flow cytometry to quantify early and late apoptotic cells; (2) Western blotting to detect activation of caspases and PARP cleavage for apoptosis, or assessment of RIP1/RIP3 kinases for necroptosis; (3) Fluorescence microscopy with specific dyes to visualize nuclear condensation, membrane blebbing, or autophagosome formation; (4) Metabolic assays like MTT or ATP measurements to assess cell viability in response to antibody treatment; and (5) Long-term clonogenic assays to determine reproductive cell death. When comparing different antibodies, researchers should use consistent experimental conditions, including appropriate cell lines (both trastuzumab-sensitive and -resistant), antibody concentrations, and treatment durations. Controls should include isotype-matched antibodies and positive controls for specific death pathways .

What are the primary mechanisms of resistance to trastuzumab therapy?

Resistance to trastuzumab therapy occurs through multiple mechanisms that can be broadly categorized as alterations affecting: (1) The ERBB2 receptor itself, including decreased expression, expression of truncated forms lacking the trastuzumab-binding domain, or mutations in the binding epitope; (2) Activation of compensatory signaling pathways, particularly through upregulation of other receptor tyrosine kinases like EGFR, HER3, or MET; (3) Alterations in downstream signaling molecules, including PIK3CA mutations, PTEN loss, or hyperactivation of the MAPK pathway; (4) Cell cycle dysregulation, notably through amplification of CCNE1 (cyclin E1) which bypasses ERBB2 inhibition; and (5) Impaired immune-mediated mechanisms, such as defective antibody-dependent cellular cytotoxicity (ADCC) . Research has shown that despite progression during trastuzumab therapy, ERBB2 typically remains a valid therapeutic target, suggesting that resistance often involves bypass mechanisms rather than complete loss of ERBB2 dependency . Understanding these specific resistance mechanisms in individual patients is crucial for designing effective subsequent treatment strategies.

How do domain-specific anti-ERBB2 antibodies differ in their ability to overcome resistance?

Domain-specific anti-ERBB2 antibodies exhibit distinct capabilities in overcoming resistance patterns due to their unique epitope binding and downstream effects. Trastuzumab binds to domain IV and primarily inhibits ligand-independent ERBB2 signaling, while pertuzumab targets domain II and blocks ligand-induced ERBB2-ERBB3 dimerization . The novel antibody H2-18, which binds to domain I, demonstrates superior ability to induce programmed cell death in trastuzumab-resistant cell lines . This mechanistic diversity explains why combined approaches targeting different ERBB2 domains have shown clinical success. The distinct binding properties affect not only direct receptor inhibition but also immune effector functions, endocytic receptor downregulation, and interference with specific dimeric complexes. Crystallographic and structural studies have been essential in defining these epitope-specific effects . The effectiveness of newer domain-specific antibodies in overcoming resistance highlights the importance of understanding the specific resistance mechanisms in individual patients and targeting ERBB2 through complementary approaches that address these mechanisms.

How might liquid biopsy approaches change ERBB2-directed therapy selection and monitoring?

Liquid biopsy approaches are poised to transform ERBB2-directed therapy selection and monitoring by providing non-invasive, real-time assessment of tumor molecular status. Cell-free DNA (cfDNA) analysis can detect ERBB2 amplifications with high specificity, potentially obviating the need for invasive tissue biopsies and capturing heterogeneity across metastatic sites . This approach is particularly valuable for longitudinal monitoring, where sequential sampling can track evolving resistance mechanisms and guide timely therapeutic adjustments. In two case studies of advanced gastric cancer patients, cfDNA detection of ERBB2 CNAs successfully identified candidates who benefited from HER2-targeted therapies, including one heavily pretreated patient who had failed four prior therapy lines . Beyond simple detection of ERBB2 status, cfDNA analysis can provide quantitative assessment of amplification levels and simultaneous detection of coalterations that might affect treatment response. Protein-based liquid biopsies measuring circulating HER2 extracellular domain can complement genomic approaches and may serve as pharmacodynamic biomarkers during therapy . As these technologies mature, they promise earlier detection of resistance emergence and more precise therapy selection based on comprehensive molecular profiles.

What is the potential for ERBB2 antibodies in combination with immune checkpoint inhibitors?

The combination of ERBB2 antibodies with immune checkpoint inhibitors represents an exciting frontier in cancer immunotherapy with several mechanistic rationales. First, anti-ERBB2 antibodies like trastuzumab partially function through immune-mediated mechanisms including antibody-dependent cellular cytotoxicity (ADCC), potentially priming the tumor microenvironment for enhanced checkpoint inhibitor activity . Second, HER2-positive tumors often exhibit an immunosuppressive microenvironment that may be reversed through combined HER2 and checkpoint blockade. Current clinical trials are exploring combinations of anti-ERBB2 antibodies with PD-1/PD-L1 inhibitors across multiple tumor types, with preliminary results suggesting potential synergistic activity in some patients. The ideal sequencing and specific antibody selection remain areas of active investigation. Novel bispecific antibodies targeting both ERBB2 and immune checkpoints are also in development, potentially offering more efficient co-targeting with a single molecule . As with other immunotherapeutic approaches, biomarker development (including tumor mutational burden, HER2 expression levels, PD-L1 status, and immune infiltrate characterization) will be crucial for identifying patients most likely to benefit from these combination strategies.

How can structural biology insights guide the development of next-generation anti-ERBB2 therapeutics?

Structural biology has become instrumental in advancing anti-ERBB2 therapeutic development by providing atomic-level insights into receptor-antibody interactions. Crystallographic analyses have revealed the distinct epitopes targeted by various antibodies: trastuzumab binds the juxtamembrane region of domain IV, pertuzumab targets the center of domain II, and newer antibodies like H2-18 interact with domain I . These structural details explain mechanistic differences in how each antibody affects receptor dimerization, conformation, and downstream signaling. Advanced techniques such as cryo-electron microscopy are further elucidating the dynamic conformational changes in ERBB2 upon ligand binding and antibody engagement. Structure-based antibody engineering can now optimize binding affinity, specificity, and effector functions through rational design rather than empirical screening alone . Additionally, structural understanding of resistance-conferring mutations can guide the development of antibodies that maintain binding despite these alterations. For antibody-drug conjugates, structural insights inform optimal linker placement and conjugation chemistry to maintain binding properties while ensuring efficient payload delivery . As computational approaches like molecular dynamics simulations become more sophisticated, in silico screening may accelerate the discovery of antibodies targeting novel epitopes with improved therapeutic properties.

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