FAR5 Antibody

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Description

Overview of scFv(FRP5)-ETA

scFv(FRP5)-ETA is a single-chain antibody fragment (scFv) derived from the FRP5 monoclonal antibody, genetically fused to a truncated Pseudomonas exotoxin A (ETA) domain. It binds selectively to ErbB2 (HER2)-overexpressing cancer cells, internalizes via receptor-mediated endocytosis, and induces apoptosis through inhibition of protein synthesis .

PropertyDescription
Target antigenErbB2 (HER2), overexpressed in breast, prostate, and other cancers
StructureN-terminal scFv (FRP5) + C-terminal ETA domain (amino acids 252–613)
Molecular weight~70 kDa
Mechanism of actionAntibody-dependent cellular toxin delivery, ribosomal inactivation

Preclinical Efficacy

In vitro and in vivo studies demonstrated potent antitumor activity:

  • In vitro: Inhibited proliferation of ErbB2-positive breast, ovarian, and prostate cancer cell lines (IC₅₀: 0.1–10 ng/mL) .

  • In vivo: Eliminated subcutaneous tumors and prevented metastasis in xenograft models .

Phase I Clinical Trial Findings

A phase I dose-escalation study evaluated scFv(FRP5)-ETA in 18 patients with metastatic ErbB2-positive cancers (breast, prostate, head/neck, NSCLC) :

Table 1: Clinical Outcomes by Dose Level

Dose (μg/kg)Patients (n)Dose-Limiting Toxicity (DLT)Clinical Activity
23NoneNo response
43NoneNo response
106Transient liver enzyme elevation (1/6)Stable disease (2/6), symptom improvement
12.56Liver enzyme elevation (1/6)Symptom improvement
203Liver enzyme elevation (2/3)Symptom improvement

Key observations:

  • Maximum tolerated dose (MTD): 12.5 μg/kg .

  • Pharmacokinetics: Peak serum concentrations >100 ng/mL at 10 μg/kg .

  • Immunogenicity: Neutralizing antibodies detected in 5/13 patients by day 8 .

Comparative Analysis With Other ErbB2-Targeting Antibody Toxins

AgentTargetToxicity ProfileClinical Efficacy
scFv(FRP5)-ETA ErbB2Hepatotoxicity (dose-dependent)Stable disease, symptom improvement
e23-based toxin ErbB2Severe liver toxicityIneffective due to intolerable toxicity

Future Directions

  • Fc engineering: Modifying Fc regions to enhance tumor penetration or reduce immunogenicity .

  • Combination therapies: Pairing with immune checkpoint inhibitors or chemotherapeutics.

  • Improved dosing: Optimizing schedules to mitigate hepatotoxicity while maintaining efficacy .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
FAR5 antibody; At3g44550 antibody; F14L2.100Probable fatty acyl-CoA reductase 5 antibody; EC 1.2.1.84 antibody
Target Names
FAR5
Uniprot No.

Target Background

Function
This antibody targets FAR5, an enzyme that catalyzes the reduction of fatty acyl-CoA to fatty alcohols. It specifically catalyzes the formation of C18:0 fatty alcohol. FAR5 plays a crucial role in the synthesis of suberin, a protective layer found in roots, seed coats, and wound-induced leaf tissue. Additionally, it contributes to the synthesis of alkyl hydroxycinnamates, which are components of root waxes.
Gene References Into Functions
  1. Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana. PMID: 24005667
Database Links

KEGG: ath:AT3G44550

STRING: 3702.AT3G44550.1

UniGene: At.36137

Protein Families
Fatty acyl-CoA reductase family
Tissue Specificity
Expressed in the endodermal cell layer surrounding the central vasculature in roots. Expressed in floral organs of very young unopened buds and receptacle of siliques.

Q&A

What is FcRH5 and why is it a significant target for antibody development?

FcRH5 (also known as Fc receptor-like protein 5, FcR-like protein 5, FCRL5, BXMAS1, Fc receptor homolog 5, Immune receptor translocation-associated protein 2, IRTA2, and CD307e) is a cell surface marker that shows enriched expression on malignant plasma cells compared to other hematologic malignancies and normal tissues . This selective expression pattern makes it an attractive target for therapeutic antibody development, particularly for multiple myeloma. Importantly, antibodies bound to FcRH5 undergo internalization, making this receptor particularly suitable for antibody-drug conjugate (ADC) approaches that can deliver cytotoxic agents directly to target cells .

What detection methods are validated for FcRH5 in research applications?

Multiple validated detection methods have been established for FcRH5:

TechniqueValidated StatusSample TypesKey Considerations
Western BlotSuitableCell lysates, tissue homogenatesDetects denatured protein
ELISASuitableSerum, plasma, cell culture supernatantsHigh sensitivity for quantification
Flow CytometrySuitableWhole blood, bone marrow, cell suspensionsMaintains native conformation
ImmunocytochemistrySuitableFixed cells, tissue sectionsVisualizes cellular localization

For flow cytometry applications specifically, validated antibody clones such as F56 have demonstrated successful detection of FcRH5 in clinical samples and research settings .

How do researchers distinguish between different anti-FcRH5 antibody clones?

Different anti-FcRH5 antibody clones (such as F56, F25, 10A8, and 7D11) may have distinct epitope specificities, binding affinities, and functional properties . When selecting an appropriate clone, researchers should consider:

  • The specific application (Western blot, flow cytometry, etc.)

  • The isotype of the antibody (e.g., IgG1κ for clone F56)

  • Validated species reactivity (most anti-FcRH5 antibodies are specific for human FcRH5)

  • Whether the clone recognizes specific post-translational modifications

  • The region of FcRH5 targeted (e.g., N-terminal vs. C-terminal domains)

Commercial suppliers often provide validation data for specific applications . For example, clone F56 has been validated for Western blotting, ELISA, flow cytometry, and immunocytochemistry applications, with specific references to published literature supporting these applications .

What considerations are important when designing antibody-drug conjugates targeting FcRH5?

The development of anti-FcRH5 antibody-drug conjugates, such as DFRF4539A, involves several critical considerations:

  • Receptor internalization kinetics: FcRH5 has demonstrated ability to internalize bound antibodies, making it suitable for ADC approaches .

  • Selection of cytotoxic payload: MMAE (monomethyl auristatin E) has been successfully conjugated to anti-FcRH5 antibodies. MMAE functions as a potent anti-mitotic agent with a mechanism similar to vincristine, disrupting the microtubule network and inhibiting cell division .

  • Conjugation chemistry: The method of linking the cytotoxic agent to the antibody affects stability, pharmacokinetics, and the mechanism of drug release within target cells.

  • Therapeutic window: Balancing efficacy against toxicity is crucial, as indicated by dose-limiting toxicities observed in clinical trials .

  • Patient selection: Identifying patients with adequate FcRH5 expression levels may be important for maximizing clinical response.

In preclinical models, DFRF4539A demonstrated efficacy in xenograft models of human FcRH5-positive multiple myeloma, validating this approach .

How can researchers assess nonspecific binding and developability issues with anti-FcRH5 antibodies?

Nonspecific binding and developability issues are critical concerns in therapeutic antibody development. Researchers can employ several strategies:

  • Computational assessment: Tools like the Therapeutic Antibody Profiler (TAP) can highlight antibodies with anomalous values compared to successful therapeutics . TAP evaluates five key properties:

    • Surface charge distribution

    • Hydrophobicity of CDR regions

    • Framework region stability

    • Unusually long CDR regions

    • Potential sequence liabilities

  • Experimental evaluation: Quantifying physicochemical properties and nonspecific interactions using microfluidic technologies can create "nonspecificity fingerprints" .

  • Avidity effects: Be aware that target avidity can increase the apparent affinity by up to two orders of magnitude, potentially masking weak nonspecific interactions .

  • Electrostatic interactions: Electrostatics can drive binding to proteins and polymers found in the bloodstream, potentially resulting in particle formation between charge-complementary antibodies and biological molecules like DNA .

A quantitative nonspecificity score can help researchers prioritize candidates early in development .

What methodologies are most effective for evaluating anti-FcRH5 antibody efficacy in disease models?

For evaluating anti-FcRH5 antibody efficacy, several methodologies have proven effective:

  • Ex-vivo growth inhibition activity (GIA) assays: These have been used to assess efficacy against target cells. For example, with malarial PfRH5 antibodies, GIA assays demonstrated dose-dependent inhibition with distinct activity groups (high, medium, and low) .

  • Combination studies: Evaluating combinations of antibodies with different epitope specificities can identify additive or synergistic effects. Studies have shown that combining GIA-low and GIA-medium antibodies can result in increased inhibitory activity .

  • Genetic diversity analysis: Next-generation sequencing (NGS) can assess genetic diversity in target populations and help infer genotype/phenotype relationships involved in antibody susceptibility .

  • Clinical isolate testing: Testing antibodies against diverse clinical isolates rather than just laboratory strains provides more realistic efficacy assessments. This approach has revealed strain-transcendent potential for some therapeutic antibodies .

For therapeutic applications, functional assays that measure actual biological outcomes (cell killing, growth inhibition) provide more relevant information than simple binding assays.

What is the optimal protocol for flow cytometric analysis of FcRH5 expression?

Based on validated protocols from the literature, the following methodology is recommended for flow cytometric analysis of FcRH5 expression:

Materials:

  • Anti-FcRH5 antibody (e.g., clone F56)

  • Appropriate fluorophore-conjugated secondary antibody or directly conjugated primary antibody

  • Flow cytometer (e.g., FACSCantoII)

  • Additional markers for cell identification (CD19, CD138, CD3, CD38, CD45, CD56)

Protocol:

  • Sample preparation: Use 100 μL of sodium heparin anticoagulated whole blood or bone marrow. Samples should be shipped at 3–8°C and processed within 54 hours of collection .

  • Blocking: Add 5 μL of human serum and 5 μL of mouse serum to reduce nonspecific binding. Incubate for 10 minutes at room temperature .

  • Antibody staining: Add the appropriate fluorescent-conjugated antibody combinations including anti-FcRH5 antibody. Incubate on ice for 30 minutes in the dark .

  • Red blood cell lysis: Add 4 mL of cold ammonium chloride lysing solution .

  • Washing: Wash with 2 mL phosphate buffered saline (PBS) with 1% bovine serum albumin (BSA) .

  • Secondary staining (if needed): For indirect staining, add appropriate secondary reagent (e.g., Streptavidin-Qdot605) and incubate on ice for 20 minutes in the dark .

  • Final preparation: Wash again with PBS/BSA, resuspend in 500 μL of 1% paraformaldehyde solution, and store at 2–8°C until analysis .

  • Quality control: Include appropriate positive controls (e.g., SU-DHL-5 cells) and negative controls. A quality benchmark is that 1 μg of anti-FcRH5 antibody should detect FcRH5 in one million target-positive cells .

How should researchers design experiments to validate anti-FcRH5 antibody specificity?

Comprehensive validation of anti-FcRH5 antibody specificity requires a multi-platform approach:

Western Blot Validation:

  • Include positive control (FcRH5-expressing cells like SU-DHL-5)

  • Include negative control (FcRH5-negative cell lines)

  • Confirm correct molecular weight of detected protein

  • Perform peptide competition assays to confirm specificity

  • Use knockout or knockdown samples as gold-standard negative controls

Flow Cytometry Validation:

  • Compare staining on FcRH5-positive and FcRH5-negative cells

  • Use multiple antibody clones targeting different epitopes

  • Include isotype-matched control antibodies

  • Perform titration experiments to determine optimal concentration

  • Validate in both cell lines and primary patient samples

Cross-Reactivity Testing:

  • Test binding to related Fc receptor family members

  • Evaluate binding across species if cross-reactivity is claimed

  • Use recombinant protein panels to assess off-target binding

Functional Validation:

  • Confirm antibody-mediated internalization of FcRH5

  • For therapeutic applications, evaluate antibody-dependent cellular cytotoxicity or other relevant mechanisms

  • For antibody-drug conjugates, confirm delivery of payload to target cells

What pharmacokinetic and immunogenicity assessments are critical when evaluating anti-FcRH5 therapeutic antibodies?

When evaluating anti-FcRH5 therapeutic antibodies, particularly antibody-drug conjugates, the following assessments are critical:

Pharmacokinetic Assessments:

ParameterMethodologyKey Information
Total antibody concentrationValidated ELISAMeasures conjugated, partially de-conjugated, and fully de-conjugated antibody
Antibody-conjugated drug (e.g., ac-MMAE)Protein A affinity capture followed by enzyme-mediated release and LC-MS/MSProvides information on drug-to-antibody ratio over time
Free drug concentrationLC-MS/MSIndicates premature drug release in circulation
Tissue distributionRadiolabeled antibody studiesShows biodistribution and tumor penetration

Immunogenicity Assessments:

  • Anti-drug antibody (ADA) detection: Monitor development of antibodies against the therapeutic using validated immunoassays

  • Neutralizing antibody assays: Determine if ADAs neutralize the therapeutic effect

  • Impact assessment: Evaluate how immunogenicity affects:

    • Drug clearance rates

    • Safety profile (including infusion reactions)

    • Efficacy outcomes

In clinical trials with anti-FcRH5 antibody-drug conjugates, these assessments have been crucial for determining appropriate dosing regimens and understanding the exposure-response relationship .

How can researchers troubleshoot nonspecific binding with anti-FcRH5 antibodies?

Nonspecific binding is a common challenge when working with antibodies. For anti-FcRH5 antibodies specifically, consider the following troubleshooting approaches:

  • Optimize blocking conditions: Use a combination of human and mouse serum (as described in validated protocols) to reduce nonspecific binding .

  • Titrate antibody concentration: Determine the optimal antibody concentration that maximizes specific signal while minimizing background.

  • Evaluate surface charge interactions: Antibodies with extreme surface charge properties may exhibit increased nonspecific binding. Computational tools like TAP can identify antibodies with charge distribution anomalies .

  • Consider hydrophobic interactions: Excessive hydrophobicity, particularly in complementarity-determining regions (CDRs), can drive nonspecific binding. The CDR vicinity PSH (patch surface hydrophobicity) metric can identify problematic antibodies .

  • Adjust buffer conditions: Modifying salt concentration, pH, or adding detergents can reduce nonspecific interactions.

  • Pre-adsorb antibody: For immunohistochemistry or similar applications, pre-adsorbing the antibody with related proteins or tissues can reduce cross-reactivity.

  • Use alternative clones: If persistent nonspecific binding occurs with one clone, consider alternative anti-FcRH5 clones that may have different specificity profiles .

Cases of successful troubleshooting have been documented with therapeutic antibodies. For example, the anti-NGF antibody MEDI-1912 exhibited high aggregation due to a large hydrophobic patch on its surface. Back-mutation of three hydrophobic residues resolved this issue while maintaining potency .

What are the critical factors for optimizing western blot protocols with anti-FcRH5 antibodies?

For optimal western blot results with anti-FcRH5 antibodies:

Sample Preparation:

  • Use appropriate lysis buffers that preserve the epitope structure

  • Include protease inhibitors to prevent degradation

  • Denature samples completely for optimal epitope exposure

Gel Electrophoresis and Transfer:

  • Select appropriate percentage acrylamide gels based on FcRH5's molecular weight

  • Optimize transfer conditions for high molecular weight proteins

  • Verify transfer efficiency with reversible staining

Antibody Incubation:

  • Use validated antibody concentrations (refer to manufacturer's recommendations for clones like F56)

  • Optimize primary antibody incubation time and temperature

  • Select appropriate secondary antibody with minimal cross-reactivity

Detection and Optimization:

  • Begin with 1:1000 dilution of primary antibody and adjust as needed

  • Include positive control (FcRH5-expressing cells)

  • Include negative control (FcRH5-negative cells)

  • If signal is weak, consider longer exposure times or more sensitive detection methods

  • If background is high, increase blocking time or washing steps

Validation:

  • Confirm specificity by detecting a band at the expected molecular weight

  • If multiple bands appear, validate using knockout controls or peptide competition

Published references for clone F56 indicate successful western blot applications for FcRH5 detection, providing a starting point for optimization .

What emerging approaches might enhance anti-FcRH5 antibody development?

Several emerging approaches show promise for enhancing anti-FcRH5 antibody development:

  • Computational developability assessment: Expanding tools like TAP to include more predictive metrics could improve early candidate selection. Current guidelines analyze five key properties, but additional parameters may further refine predictions .

  • Affinity maturation with developability constraints: Optimization of target affinity often increases nonspecific interactions . Implementing developability filters during affinity maturation could maintain specificity while enhancing potency.

  • Novel antibody formats: Bispecific antibodies targeting FcRH5 and another tumor-associated antigen could enhance specificity and efficacy.

  • Advanced conjugation technologies: Next-generation antibody-drug conjugates with site-specific conjugation, cleavable linkers, and novel payloads could improve the therapeutic window.

  • Combination therapy approaches: Testing anti-FcRH5 antibodies in combination with immunomodulatory drugs or immune checkpoint inhibitors may enhance clinical efficacy.

  • Single-cell analysis of target expression: Deeper characterization of FcRH5 expression heterogeneity in patient samples could inform patient selection strategies.

  • Nonspecificity fingerprinting: Implementing quantitative scores for nonspecific interactions could standardize antibody assessment across research groups .

These approaches could address current limitations and expand the potential applications of anti-FcRH5 antibodies in both research and clinical settings.

How might genetic diversity in target populations impact anti-FcRH5 antibody efficacy?

Genetic diversity in target populations can significantly impact antibody efficacy, as seen with other therapeutic antibodies:

  • Polymorphism analysis: Next-generation sequencing can identify variants in the FcRH5 gene that might affect antibody binding. Similar approaches with PfRH5 antibodies revealed novel mutations with potential functional impact .

  • Epitope conservation: Antibodies targeting highly conserved epitopes are more likely to maintain efficacy across genetically diverse populations.

  • Combination approaches: Using antibody cocktails targeting different epitopes might overcome resistance due to genetic diversity, as demonstrated by the additive effects observed with different antibody combinations .

  • Clinical isolate testing: Evaluating antibodies against diverse clinical isolates provides more realistic assessments of efficacy than testing against laboratory strains alone. This approach revealed strain-transcendent potential for some therapeutic antibodies .

  • Structure-guided design: Understanding the structural basis of antibody-antigen interactions can guide the development of broadly neutralizing antibodies that maintain efficacy despite target variation.

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