At1g32430 Antibody

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Description

Basic Characteristics of the At1g32430 Antibody

The At1g32430 Antibody is commercially available as a purified immunoglobulin product. Key details include:

AttributeSpecification
Product CodeCSB-PA881778XA01DOA
Uniprot IdentifierQ9LQL4
Target OrganismArabidopsis thaliana (Mouse-ear cress)
Antibody FormatMonoclonal antibody
Size2 ml or 0.1 ml vials

Source:

Genomic Context of the At1g32430 Protein

The At1g32430 gene encodes a protein annotated as an F-box family protein in Arabidopsis. F-box proteins are critical components of the SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase complex, which regulates protein degradation via the ubiquitin-proteasome system. These proteins often mediate responses to environmental stimuli and developmental cues .

Expression and Functional Insights

  • Gene Expression Data: Limited quantitative data is available, but At1g32430 has been noted in studies analyzing gene expression profiles in Arabidopsis. For example, it is listed alongside genes with upregulated expression (e.g., AT1G32505) in contexts involving chromatin remodeling or stress responses .

  • Functional Predictions: While no direct functional studies are cited, F-box proteins in Arabidopsis are typically involved in:

    • Protein Turnover: Targeting specific substrates for degradation.

    • Stress Adaptation: Modulating responses to abiotic or biotic stress.

    • Developmental Regulation: Controlling key cellular processes during growth .

Potential Use Cases

The At1g32430 Antibody could theoretically be used to:

  1. Study Subcellular Localization: Track the protein in Arabidopsis tissues (e.g., leaves, roots) using immunofluorescence or immunoblotting.

  2. Analyze Protein Interactions: Identify binding partners via co-immunoprecipitation (Co-IP).

  3. Investigate Gene Function: Validate RNAi or CRISPR knockout phenotypes by detecting protein loss.

Limitations and Knowledge Gaps

  1. Lack of Functional Validation: No peer-reviewed studies explicitly describe the antibody’s performance in Western blotting, immunoprecipitation, or immunohistochemistry.

  2. Specificity Concerns: Cross-reactivity with homologous F-box proteins in Arabidopsis or other species is untested in the provided literature.

  3. Variable Gene Expression: The At1g32430 gene’s expression patterns under different conditions remain poorly characterized, limiting its utility in dynamic studies .

Comparative Analysis of Arabidopsis Antibodies

The At1g32430 Antibody is part of a broader catalog of Arabidopsis antibodies, many of which target proteins with defined roles. Below is a comparison of two representative antibodies:

Antibody TargetFunction/RoleExperimental Utility
At1g32430 (F-box)Likely SCF complex componentLimited (no published studies)
At2g39730 (Rubisco Activase)Chloroplast protein involved in photosynthesisValidated in nitration studies

Sources:

Future Directions

To advance research on the At1g32430 Antibody, the following steps are recommended:

  1. Validate Specificity: Perform Western blotting on At1g32430 knockout mutants to confirm target recognition.

  2. Optimize Protocols: Establish protocols for immunolocalization in Arabidopsis tissues.

  3. Explore Functional Partners: Use affinity purification-mass spectrometry to identify proteins interacting with the At1g32430 target.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Composition: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
At1g32430 antibody; F5D14.21Putative F-box/kelch-repeat protein At1g32430 antibody
Target Names
At1g32430
Uniprot No.

Q&A

The At1g32430 antibody is a research tool used to study the Arabidopsis thaliana gene AT1G32430, which encodes a protein involved in plant developmental processes. Below are structured FAQs addressing methodological considerations for academic researchers, organized by complexity and research phase:

Advanced Experimental Design

4. Resolving contradictory phosphorylation data between assays
When ELISA shows increased phosphorylation but microarray data indicates downregulation:

  • Technical validation

    • Repeat assays with reciprocal techniques (e.g., Phos-tag™ SDS-PAGE vs ELISA)

    • Use ATP-competitive kinase inhibitors as experimental controls

Optimizing ChIP-seq conditions for root vs leaf tissues

ParameterRoot TissueLeaf Tissue
Fixation Time20 min vacuum30 min vacuum
Sonication6 cycles (30s ON/30s OFF)8 cycles
Antibody Conc.1:2001:500

Data Interpretation Challenges

6. Distinguishing gene family cross-reactivity in qPCR-validated samples
When western blot shows multiple bands but qPCR confirms specific AT1G32430 expression:

  • Perform 2D gel electrophoresis with pH 3-10 strips

  • Use CRISPR-generated epitope tag lines as biological controls

  • Apply antibody pre-adsorption with recombinant paralog proteins

7. Quantitative analysis methods for developmental stage comparisons
Normalize using:
Relative Signal=AB SignaltissueCol0 Total Protein×Actin Signal\text{Relative Signal} = \frac{\text{AB Signal}_{tissue}}{\text{Col0 Total Protein} \times \text{Actin Signal}}
Where Col0 = wild-type reference strain

Multi-Omics Integration

8. Correlating antibody-derived data with RNA-seq datasets
Create a decision matrix:

RNA-Seq Fold ChangeAB Signal ChangeInterpretation
>2 Up<1.2 UpPost-transcriptional regulation
No Change>2 UpProtein stability modification
>2 Down>2 DownCoordinated regulation

9. Time-resolved experimental designs for circadian studies
Optimal sampling protocol:

  • 4 hr intervals over 48 hr

  • Include duplicate biological replicates

  • Use mixed-effects model:
    yijk=μ+Gi+Tj+(G×T)ij+ϵijky_{ijk} = \mu + G_i + T_j + (G \times T)_{ij} + \epsilon_{ijk}
    Where GG = genotype, TT = time point

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