At1g56400 Antibody

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Description

Antibody Structure and Function

Antibodies (immunoglobulins) are Y-shaped proteins produced by B cells, comprising two heavy chains and two light chains connected by disulfide bonds . Their variable regions (Fab) bind antigens with high specificity, while the constant region (Fc) mediates immune effector functions such as complement activation and phagocytosis .

Key structural features:

  • Paratope: Antigen-binding site formed by hypervariable loops (complementarity-determining regions, CDRs) .

  • Isotypes: IgG, IgA, IgM, etc., defined by heavy-chain constant domains .

  • Allotypes: Naturally occurring allelic variants that influence stability, effector functions, and clinical outcomes .

Antibody Development and Validation

While no data exist for "At1g56400 Antibody," standard workflows for antibody development include:

Target Identification

  • Gene annotation (e.g., At1g56400 may encode a hypothetical protein requiring functional characterization).

  • Epitope prediction using computational tools.

Antibody Generation

  • Polyclonal antibodies: Recognize multiple epitopes; generated via animal immunization .

  • Monoclonal antibodies: Target a single epitope; produced via hybridoma technology .

Validation Assays

ParameterMethodsPurpose
SpecificityWestern blot, ELISAConfirm target binding
Cross-reactivityTissue cross-reactivity studiesAssess off-target binding
Functional activityNeutralization, flow cytometryEvaluate biological effects

Research Gaps and Challenges

  • Lack of direct evidence: No peer-reviewed studies or commercial products related to "At1g56400 Antibody" were identified in the provided sources.

  • Potential applications: If At1g56400 encodes a stress-response or developmental protein in Arabidopsis, antibodies could aid in studying its localization, expression, or interactions.

Recommendations for Future Work

  1. Gene characterization: Validate At1g56400 expression and function via knockout models or transcriptomics.

  2. Epitope synthesis: Design peptides for antibody production, prioritizing regions with low homology to other proteins.

  3. Collaborative efforts: Leverage plant biology databases (e.g., TAIR) or antibody repositories (e.g., Proteintech ) for reagent availability.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Composition: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
At1g56400 antibody; F13N6.18Putative F-box/LRR-repeat protein At1g56400 antibody
Target Names
At1g56400
Uniprot No.

Q&A

Here’s a structured FAQ collection for researchers working with At1g56400 Antibody (Uniprot: Q9C7X8, Product Code: CSB-PA887234XA01DOA), based on technical and methodological challenges in academic research:

Advanced Research Questions

How to resolve contradictions in At1g56400 subcellular localization data?

  • Approach:

    • Combine immunogold EM with subcellular fractionation (e.g., differential centrifugation) .

    • Cross-validate using orthogonal methods like split-YFP complementation .

Can computational tools predict At1g56400-epitope interactions?

  • Workflow:

    • Model antibody structure using DeepAb (RMSD: 3.44 Å for CDRH3 vs. 4.38 Å with traditional methods) .

    • Predict epitopes via AbAdapt (integrates AlphaFold-refined paratopes) .

    • Validate with alanine-scanning mutagenesis of target protein .

How to design a study comparing At1g56400 expression under stress conditions?

  • Design:

    VariableConsideration
    Timepoints0, 6, 12, 24h post-stress
    Replicatesn ≥ 5 biological replicates
    ControlsConstitutive marker (e.g., ACTIN2) + untreated samples
    Use RNA-seq to correlate protein levels with transcriptional changes .

Data Interpretation

Why does At1g56400 show variable binding affinity across studies?

  • Factors:

    • Post-translational modifications (e.g., phosphorylation at Ser-128) .

    • Protein conformational states (assess via limited proteolysis + mass spec) .

How to analyze cross-reactivity risks in non-Arabidopsis species?

  • Strategy:

    • Perform phylogenetic alignment of epitope region across Brassicaceae .

    • Test antibody against recombinant proteins from closely related species .

Technical Validation Table

AssayKey MetricAcceptable Range
Western blotSignal:noise ratio≥5:1
ELISACoefficient of variation (CV)<15%
IHCBackground staining≤10% of total area

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