FCA Antibody

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Product Specs

Buffer
Preservative: 0.03% ProClin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 Weeks (Made-to-Order)
Synonyms
FCA antibody; At4g16280 antibody; dl4180c antibody; dl4181c antibody; dl4182c antibody; FCAALL.331Flowering time control protein FCA antibody
Target Names
FCA
Uniprot No.

Target Background

Function
FCA plays a crucial role in the transition from vegetative to reproductive development in plants. Specifically, it regulates flowering time through the autonomous pathway by reducing FLOWERING LOCUS C (FLC) mRNA levels. Furthermore, FCA is essential for RNA-mediated chromatin silencing of various genomic loci. Its mechanism involves co-transcriptional recognition and marking of aberrant RNA for silencing, and it controls alternative cleavage and polyadenylation of pre-mRNAs and antisense RNAs. FCA functions redundantly with FPA to suppress the expression of distally polyadenylated antisense RNAs at the FLC locus.
Gene References Into Functions

FCA's multifaceted roles are supported by the following research:

  • Thermal Adaptation: FCA mediates epigenetic pathways contributing to plant thermal adaptation during autotrophic development (PMID: 28454607).
  • Stem Growth Regulation: Regulation of YUC8 expression by FCA modulates PIF4-induced architectural changes, optimizing stem growth under high temperatures (PMID: 25400039).
  • Thermotolerance: FCA induces thermotolerance by promoting antioxidant accumulation under heat stress (PMID: 25266977).
  • Flowering Time Fine-Tuning: The FCA-miR172 regulon provides an adaptive mechanism for fine-tuning flowering time under fluctuating temperatures (PMID: 22431732).
  • Noncanonical Translation: FCA regulation involves sequences in the 5' region that modulate noncanonical translation initiation, affecting its expression profile (PMID: 21075770).
  • FLC Repression: FLC is repressed by genes within the autonomous promotion pathway, including FCA (PMID: 16940039).
  • ABA Independence: FCA does not bind abscisic acid (ABA) (PMID: 19078995).
Database Links

KEGG: ath:AT4G16280

STRING: 3702.AT4G16280.2

UniGene: At.219

Subcellular Location
Nucleus.
Tissue Specificity
Constitutively expressed, but the negative feedback maintains the active isoform a low level throughout much of the plant, except in meristematic cells at a specific time in development.

Q&A

What is Freund's Complete Adjuvant (FCA) and how does it differ from Freund's Incomplete Adjuvant (FIA)?

FCA is a water-in-oil emulsion containing inactivated mycobacterial cells or cellular components, while FIA has the same composition minus the mycobacterial components. This key difference makes FCA significantly more effective than FIA for inducing high antibody titers in laboratory animals. Both formulations function by creating an antigen depot effect, sequestering and gradually releasing the antigen over extended periods, which results in a prolonged antibody response . The water-in-oil emulsion structure in both adjuvants ensures that the antigen is distributed over a large surface area, increasing potential interactions with relevant antigen-presenting cells in vivo, thereby enhancing immune response activation .

What are the proper preparation techniques for FCA-antigen emulsions?

Proper preparation of FCA-antigen emulsions requires specific techniques to ensure effectiveness while minimizing adverse effects:

  • The mycobacterial components in FCA must first be properly resuspended by thorough vortexing or shaking before use .

  • Emulsions should be prepared by combining approximately equal volumes of adjuvant and aqueous antigen solution in a manner that allows the oil to become the continuous phase .

  • The optimal ratio is one part or less of Freund's adjuvant to one part antigen solution .

  • Proper mixing is critical to ensure the antigen is distributed over a large surface area, maximizing interaction with antigen-presenting cells .

  • More concentrated aqueous antigen solutions are preferred as they result in antigen-rich emulsions and reduce the quantity of emulsion required for injection .

How should researchers evaluate and validate antibodies produced using FCA?

Validation goes significantly beyond basic testing. A proper validation protocol for antibodies produced using FCA should include:

  • Application-specific testing: Antibodies should be tested in the specific applications they will be used for (e.g., Flow Cytometry, Western Blot, or Immunohistochemistry) .

  • Specificity and selectivity assessment: At the maximal dilution that provides good signal in antigen-expressing cells or tissues, there should be minimal signal in non-expressing control cells or tissues .

  • Comparative analysis: Validation always involves comparison between expressing and non-expressing cells or tissues at identical antibody dilutions. For example, a CD4 antibody is validated in Flow Cytometry when it selectively identifies a proportionate subpopulation from all T-cells .

  • Cross-validation: Ideally, results should be compared with another validated antibody against the same target to confirm consistent findings .

  • Documentation: All validation steps should be thoroughly documented to ensure reproducibility .

What strategies can minimize FCA-induced inflammatory reactions while maintaining robust antibody production?

FCA is known to induce significant inflammatory reactions due to host responses to non-metabolizable oil and mycobacterial components. Research has identified several evidence-based approaches to minimize these adverse effects without compromising antibody yield:

  • Reduce mycobacterial concentration to less than 0.5 mg/ml in the FCA preparation .

  • Utilize more concentrated aqueous antigen solutions to create antigen-rich emulsions, thereby reducing the total volume of emulsion required .

  • Implement multiple injection sites with minimal volumes (≤0.1 ml) at each site rather than single large-volume injections .

  • Ensure adequate spacing between injection sites to prevent fusion of inflammatory lesions .

  • Consider alternative adjuvant formulations for booster immunizations, such as switching to FIA after the initial FCA immunization .

The balance between effective immunization and animal welfare should be carefully considered in experimental design, with protocols approved by institutional animal care committees.

How can researchers troubleshoot inconsistent antibody responses when using FCA?

Inconsistent antibody responses with FCA can result from several methodological factors:

  • Emulsion Quality Issues: Improper emulsification can lead to rapid release of antigen and suboptimal immune response. The stability of the emulsion should be tested before injection (e.g., water drop test in saline) .

  • Mycobacterial Component Variability: Inadequate resuspension of mycobacterial components before emulsion preparation can cause batch-to-batch variability. Always thoroughly vortex or shake FCA before use .

  • Antigen Properties: The physical and chemical properties of antigens can affect emulsion stability and antigen presentation. For highly hydrophobic antigens, additional emulsifiers or alternative formulation approaches may be necessary .

  • Host Factors: Genetic variability between animal strains can significantly impact antibody responses. Consider preliminary testing with small groups of animals from different strains to identify optimal responders .

  • Administration Technique: Injection route and technique influence both the immune response and adverse reactions. Subcutaneous routes often provide a good balance between antibody production and minimal discomfort .

What computational approaches can enhance antibody specificity prediction when using FCA-based immunization protocols?

Advanced computational methods can enhance antibody development beyond traditional FCA-based immunization:

  • Biophysics-informed Models: These models can be trained on experimentally selected antibodies to identify distinct binding modes associated with specific ligands, enabling prediction and generation of variants beyond those observed in experiments .

  • Binding Mode Analysis: Computational approaches can disentangle multiple binding modes associated with specific ligands, particularly valuable when working with chemically similar targets .

  • Specificity Profile Design: These tools support the design of antibodies with customized specificity profiles—either with specific high affinity for a particular target or with cross-specificity for multiple targets .

  • Experimental Bias Mitigation: Computational approaches can help identify and correct for biases in selection experiments that might affect antibody specificity .

Integration of these computational approaches with traditional FCA-based immunization can significantly enhance specificity and reduce the number of animals required in antibody production protocols.

What are the current best practices for selecting and validating antibodies for specific research applications?

The following table summarizes key considerations for selecting and validating antibodies across common research applications:

ConsiderationImmunoblottingImmunohistochemistryFlow Cytometry
Primary ValidationConfirms target protein sizeConfirms target localizationIdentifies specific cell populations
Critical ControlsPositive and negative lysatesExpressing and non-expressing tissuesPositive and negative cell populations
Common PitfallsNon-specific bands, degradation productsBackground staining, fixation artifactsAutofluorescence, non-specific binding
Minimum ValidationTarget band at correct MW, absent in negative controlSpecific staining at expected location, absent in negative controlDistinct population separation, absent in negative control
Advanced ValidationKnockout/knockdown comparison, peptide competitionKnockout tissue comparison, multiple antibodies to same targetFluorescence-minus-one controls, isotype controls

Researchers should consult reliable resources when selecting antibodies, including validation databases and literature citations (Table 1, result ) . The responsibility for antibody validation is shared between manufacturers and investigators, with careful documentation of all validation steps.

How should researchers integrate FCA-based immunization with modern antibody engineering approaches?

While FCA remains valuable for polyclonal antibody production, integrating traditional immunization with modern engineering approaches offers several advantages:

  • Phage Display Integration: Initial immunization with FCA can generate a diverse antibody repertoire, which can then be harvested and subjected to phage display selection to identify highest-affinity binders .

  • Sequencing and Computational Analysis: High-throughput sequencing of antibody repertoires from immunized animals combined with computational analysis can identify binding patterns and lead to improved specificity profiles .

  • Hybridoma Development: Following FCA immunization, hybridoma technology can be employed to develop monoclonal antibodies with defined specificity profiles, which can then be further engineered for improved properties .

  • Customized Specificity Design: Computational models trained on experimental data can guide the design of antibodies with customized specificity profiles not present in the initial immune response .

This integrated approach leverages the immune system's natural diversity generation (enhanced by FCA) while applying directed evolution and rational design principles to optimize antibody properties.

What ethical considerations should guide FCA use in antibody production?

Ethical considerations in FCA use must balance scientific needs with animal welfare:

  • Refinement: Implementation of refined protocols that minimize discomfort, such as using lower volumes, multiple injection sites, and reduced mycobacterial content .

  • Reduction: Use of computational prediction and in vitro screening methods before animal immunization to reduce the number of animals required .

  • Replacement: Consideration of alternative methods such as phage display or synthetic antibody libraries when appropriate for the research question .

  • Regulatory Compliance: Adherence to institutional animal care committee guidelines, which often include specific provisions for FCA use .

  • Scientific Justification: Documentation of clear scientific rationale for FCA use when alternatives might be available but less effective for the specific research goal .

Researchers should work closely with animal care committees to ensure protocols balance scientific needs with ethical considerations, particularly when using inflammatory adjuvants like FCA.

How does FCA influence the antibody repertoire diversity and affinity maturation compared to alternative adjuvants?

FCA's unique immunostimulatory properties significantly impact antibody development:

  • Repertoire Breadth: The strong inflammatory response induced by mycobacterial components in FCA promotes recruitment of a more diverse set of B cell clones into the immune response compared to many alternative adjuvants .

  • Affinity Maturation Enhancement: The prolonged antigen release from the FCA depot effect extends the germinal center reaction, allowing for more extensive affinity maturation and production of higher-affinity antibodies .

  • Isotype Profile: FCA typically induces a balanced Th1/Th2 response, resulting in production of diverse antibody isotypes. This contrasts with some modern adjuvants that may skew toward particular isotype profiles .

  • T Cell Help: The strong activation of T cells by mycobacterial components provides robust T cell help for B cells, enhancing both the quantity and quality of antibody production .

These properties explain why FCA remains valuable in research settings despite its inflammatory potential, particularly when high-titer, high-affinity antibodies are required.

What approaches can resolve validation conflicts when antibodies produced with FCA show inconsistent results across applications?

Resolving validation conflicts requires systematic troubleshooting:

  • Application-Specific Validation: Recognize that antibodies validated in one application (e.g., Western blot) may not perform in another (e.g., immunohistochemistry). Each application represents distinct conditions requiring separate validation .

  • Epitope Accessibility Analysis: Consider whether the epitope recognized by the antibody is accessible in different experimental conditions. Denaturation in Western blot versus native conformation in flow cytometry can yield different results .

  • Cross-Reactivity Profiling: When inconsistent results occur, expand cross-reactivity testing using closely related antigens or tissues from knockout models to identify potential off-target binding .

  • Protocol Optimization: Systematically adjust experimental conditions (fixation methods, blocking agents, incubation times) to determine if technical factors rather than antibody specificity issues are causing inconsistencies .

  • Multiple Antibody Approach: Use multiple antibodies targeting different epitopes of the same protein to distinguish between true signals and artifacts .

This structured approach can help distinguish between antibody limitations and technical issues when validation results appear inconsistent.

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