The At5g44950 antibody targets the protein product of the AT5G44950 gene, which corresponds to ARGONAUTE10 (AGO10) in Arabidopsis thaliana. AGO10 is a member of the AGO protein family involved in small RNA-guided gene silencing pathways, particularly in shoot apical meristem (SAM) maintenance and lateral organ development .
Host Species: Typically raised in rabbits or mice.
Applications: Western blot (WB), immunohistochemistry (IHC), and immunoprecipitation (IP) .
Specificity: Binds to epitopes within the AGO10 protein, validated via knockdown/knockout controls in plant models .
AGO10 regulates SAM development by modulating the expression of Class III HOMEODOMAIN-LEUCINE ZIPPER (HD-ZIP III) transcription factors, which maintain stem cell pluripotency . It also interacts with the bHLH transcription factor INDEHISCENT (IND) to regulate tissue symmetry and auxin transport .
SAM Development: AGO10 mutants (ago10zwl-3) fail to establish SAM and exhibit disrupted leaf polarity .
Gene Silencing: Competes with AGO1 to bind miR166/165, fine-tuning HD-ZIP III activity .
Replum Formation: Represses IND to ensure proper carpel margin development .
Western Blot: Detects AGO10 (~110 kDa) in Arabidopsis lysates .
Immunohistochemistry: Localizes AGO10 in SAM and vascular tissues .
| Parameter | Details |
|---|---|
| Immunogen | Recombinant AGO10 (amino acids 99–193) . |
| Cross-Reactivity | Confirmed in Arabidopsis, with potential reactivity in other plants. |
| Controls | ago10 knockout lines show no signal . |
Structural Data: No published crystal structures or epitope mapping for the At5g44950 antibody.
Functional Studies: Limited in vivo data on antibody efficacy in non-Arabidopsis species.
Commercial Availability: Only one supplier (Cusabio) lists this antibody, with no peer-reviewed validation .
Mechanistic Studies: Clarify AGO10’s role in auxin/cytokinin crosstalk using antibody-based IP-MS.
Agricultural Relevance: Explore AGO10’s utility in crop yield optimization via meristem engineering.
Given the specific nature of the query regarding "At5g44950 Antibody," which does not appear in the provided search results, I will create a general FAQ collection for researchers focusing on antibody-related research scenarios. This will cover aspects relevant to experimental design, data analysis, and methodological considerations in academic research.
To validate the specificity of an antibody, you should:
Use Positive and Negative Controls: Include samples known to express the target protein and those that do not.
Perform Western Blotting: This helps confirm the molecular weight of the target protein.
Conduct Immunohistochemistry (IHC): To visualize the protein's localization in tissues.
Run Competition Assays: Use the antigen to compete with the antibody for binding sites to confirm specificity .
Re-evaluate Experimental Conditions: Ensure consistency in buffer composition, temperature, and incubation times.
Check Antibody Lot Variability: Different lots may have varying levels of specificity or activity .
Use Multiple Detection Methods: Combine techniques like Western blotting and IHC to confirm findings .
To determine the epitope specificity:
Use Epitope Mapping Techniques: Such as peptide arrays or mutagenesis studies to identify the exact binding site on the protein .
Conduct Competition Assays: With other antibodies known to bind to different epitopes on the same protein.
Application-Specific Validation: Ensure the antibody performs well in the chosen assay (e.g., flow cytometry, IHC) .
Species and Isotype Compatibility: Choose antibodies that are compatible with your experimental system (e.g., mouse monoclonal for mouse tissues).
Literature Review: Check previous studies for reported performance and specificity issues .
IgG1 and IgG4 Differences: IgG1 is more likely to induce effector functions like complement activation, whereas IgG4 is often associated with chronic exposure and may not activate complement .
Experimental Design: Consider the biological context and desired outcome when selecting an antibody subclass for your study.
Use Specificity Controls: Include samples with proteins of similar molecular weights or structures to check for non-specific binding .
Optimize Assay Conditions: Adjust conditions like antibody concentration and incubation time to reduce non-specific interactions .
Genetic Strategies: Techniques like RNA interference can help validate antibody specificity by knocking down the target protein .
Mass Spectrometry: Used to identify proteins bound by antibodies, ensuring specificity .
Standardize Protocols: Use consistent protocols across experiments.
Include Replicates: Run multiple replicates to confirm findings.
Share Detailed Methods: Provide full experimental details in publications to facilitate replication by others .
Immunogenicity Testing: Essential for detecting anti-drug antibodies (ADAs) that can affect therapeutic efficacy and safety .
Risk-Based Approach: FDA recommends a risk-based strategy for evaluating and managing immune responses to therapeutic proteins .
Diversity in Antibody Repertoires: Human antibodies show great diversity, which can be leveraged for understanding disease mechanisms and developing treatments .
Implications for Autoimmune Diseases: Understanding antibody diversity can aid in diagnosing autoimmune diseases and designing targeted therapies .