POP2 Antibody

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Description

Applications in Research

The POP2 antibody has been utilized to investigate POPDC2’s role in:

  • Cardiac Function: Localizing POPDC2 in human heart tissue to study its involvement in maintaining cardiac rhythm .

  • Ion Channel Regulation: Exploring POPDC2’s interaction with potassium channels (e.g., KCNK2) and its modulation via cAMP-binding .

Key Findings:

  • Immunohistochemical Validation: Demonstrated strong staining in human heart muscle tissue, confirming POPDC2’s cardiac localization .

  • Functional Insights: Suggested POPDC2 enhances cell surface expression of KCNK2, thereby influencing electrical activity in cardiomyocytes .

Mechanism of Action

While the antibody itself does not modulate biological activity, its target (POPDC2) functions as a regulatory protein:

  • cAMP-Binding: Mediates signaling pathways critical for heart rate regulation .

  • KCNK2 Modulation: Increases potassium channel density, stabilizing membrane potential in cardiac cells .

Clinical and Experimental Relevance

The POP2 antibody serves as a tool for:

  • Cardiovascular Research: Studying POPDC2’s role in arrhythmias or heart failure.

  • Therapeutic Development: Identifying POPDC2 as a potential target for modulating cardiac ion channel function .

Data Tables

Table 2: Research Applications

ApplicationExample Use Case
Cardiac Tissue AnalysisDetecting POPDC2 in human heart muscle
Ion Channel StudiesLinking POPDC2 to KCNK2 expression

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
POP2 antibody; GABA-T antibody; GABAT1 antibody; HER1 antibody; At3g22200 antibody; MKA23.11Gamma-aminobutyrate transaminase POP2 antibody; mitochondrial antibody; AtGABA-T antibody; EC 2.6.1.96 antibody; Gamma-aminobutyric acid aminotransferase 1 antibody; Protein HEXENAL RESPONSE 1 antibody; Protein POLLEN-PISTIL INCOMPATIBILITY 2 antibody; AtPOP2 antibody
Target Names
POP2
Uniprot No.

Target Background

Function
This antibody targets GABA transaminase, an enzyme that degrades gamma-amino butyric acid (GABA). It utilizes pyruvate or glyoxylate as amino-group acceptors, but not 2-oxoglutarate. The pyruvate-dependent activity is reversible, while the glyoxylate-dependent activity is irreversible. This enzyme does not utilize beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. GABA transaminase plays a role in modulating steady-state GABA levels in diploid pistil cells and the haploid pollen tube. It is involved in the formation of a GABA gradient along the pollen tube path and contributes to maintaining the shoot apical meristem (SAM) structure and subsequent adaxial-abaxial axis-dependent development of cotyledons and leaves.
Gene References Into Functions
  1. A strong connection exists between GABA metabolism and the glyoxylate cycle during stress. PMID: 23518583
  2. AtGABA-T is functionally interchangeable with ScGABA-TKG for GABA growth, thermotolerance, and limiting production of reactive oxygen species (ROS), irrespective of its location in mitochondria or cytosol of yeast cells. However, AtGABA-T is about half as efficient in performing these functions compared to ScGABA-TKG. PMID: 23740823
  3. GABA-T deficiency during salt stress leads to root and hypocotyl developmental defects and alterations in cell wall composition. PMID: 23148892
  4. The GABA transaminase deficient mutant pop2-1 exhibits hypersensitivity to NaCl. PMID: 20122158
  5. The isolation and characterization of the her1 mutant (encoding GABA-TP) revealed alterations in a specific response to E-2-hexenal. This study demonstrates that the mutation in GABA-TP leads to an accumulation of high GABA levels in her1 plants. PMID: 17971036
  6. Data suggests that POP2 mutants suppress the phenotype of succinic semialdehyde dehydrogenase (ssadh) mutants in Arabidopsis. PMID: 18846220
  7. GABA-T possesses both pyruvate- and glyoxylate-dependent activities. PMID: 19264755

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Database Links

KEGG: ath:AT3G22200

STRING: 3702.AT3G22200.2

UniGene: At.22661

Protein Families
Class-III pyridoxal-phosphate-dependent aminotransferase family
Subcellular Location
Mitochondrion.
Tissue Specificity
Expressed in flowers, siliques, stems, leaves, shoots and roots. Detected in reproductive tissues, in the stigma, style, abscission zone of siliques, stamens and pollen. Not found in pollen tubes or the transmitting tract. In vegetative tissues, found in

Q&A

Here’s a structured FAQ collection for researchers working with POP2 (POPDC2) antibodies, synthesized from peer-reviewed methodologies and technical guidelines:

Advanced Experimental Design

How do I resolve discrepancies in POP2 expression data across studies?

Common pitfalls and solutions:

IssueRoot CauseResolution
Variable band sizesPost-translational modifications (e.g., phosphorylation)Use deglycosylation enzymes pre-WB
Inconsistent IHC stainingEpitope masking due to fixationOptimize antigen retrieval (e.g., citrate buffer pH 6.0)
Non-specific bindingCross-reactivity with POP1/POP3 isoformsValidate with isoform knockout controls

What controls are essential for flow cytometry experiments using POP2 antibodies?

  • Fluorescence-minus-one (FMO) controls: Identify spillover between channels .

  • Voltration: Optimize PMT voltages to avoid signal saturation (e.g., peak 2 method) .

  • Biological controls: Compare wild-type vs. POP2-deficient cardiomyocytes .

Methodological Best Practices

How do I titrate a POP2 antibody for flow cytometry?

  • Prepare serial dilutions (1:50 to 1:800) in PBS/1% BSA.

  • Stain POP2-positive cells (e.g., primary cardiomyocytes).

  • Calculate staining index: SI=MedianpositiveMediannegativeSDnegative\text{SI} = \frac{\text{Median}_{positive} - \text{Median}_{negative}}{\text{SD}_{negative}} .

  • Select the dilution with the highest SI (typically 1:200 for ab224121 in IHC) .

Can POP2 antibodies be used in multiplex assays with other cardiac markers?

Yes, but prioritize spectral overlap resolution:

MarkerFluorophoreLaser Compatibility
POP2 (ab224121)AF488488 nm
Troponin TPE-Cy7561 nm
Connexin 43BV421405 nm

Source: Panel design principles from .

Troubleshooting Data Contradictions

Why does my POP2 antibody show non-specific binding in WB?

  • Cause: Residual protein aggregates or incomplete blocking.

  • Solution: Pre-clear lysates with protein A/G beads and use 5% non-fat milk + 0.1% Tween-20 .

How do I confirm POP2’s interaction with KCNK2 experimentally?

  • Co-immunoprecipitation (Co-IP): Use POP2 antibody (ab69176) for pull-down, then probe for KCNK2 .

  • Functional assay: Measure KCNK2 current density via patch-clamp in POP2-overexpressing cells .

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