At1g09390 Antibody

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Description

Research Context and Target Protein

The At1g09390 gene encodes a GDSL-motif esterase/acyltransferase/lipase, part of an enzyme superfamily with broad substrate specificity . These enzymes catalyze reactions such as acyltransfer or hydrolysis in lipid and non-lipid pathways, though the precise biological function of At1g09390 remains under investigation.

Key Functional Insights:

  • Enzyme Activity: Likely involved in acyl lipid metabolism or secondary metabolite biosynthesis.

  • Subcellular Localization: Predicted to be secreted, based on protein structure .

Applications in Research

The antibody is validated for:

  • Western Blotting: Detects the At1g09390 protein in Arabidopsis tissue extracts.

  • ELISA: Quantifies protein levels in purified samples or lysates.

Example Workflow:

  1. Sample Preparation: Homogenize Arabidopsis tissues in lysis buffer.

  2. SDS-PAGE/WB: Resolve proteins, transfer to membrane, and probe with the antibody.

  3. Signal Detection: Use HRP-conjugated secondary antibodies for chemiluminescent detection.

Note: Cross-reactivity with non-Arabidopsis species has not been reported, but rigorous validation is recommended for novel applications .

Availability and Considerations

The antibody is available in custom quantities (2ml or 0.1ml vials) through Cusabio’s catalog . Key considerations include:

  • Order Lead Time: 14–16 weeks due to made-to-order production.

  • Handling: Requires storage at -20°C or -80°C to maintain stability.

  • Limitations: Not validated for immunohistochemistry (IHC) or immunoprecipitation (IP).

Comparative Analysis with Related Antibodies

Cusabio offers a suite of Arabidopsis-specific antibodies, including:

Antibody/TargetProduct CodeUniprot IDApplications
At1g09390 AntibodyCSB-PA525693XA01DOAO80522ELISA, WB
At5g45950 AntibodyCSB-PA880756XA01DOAQ9FJ41ELISA, WB
At1g28580 AntibodyCSB-PA861896XA01DOAQ9FXJ2ELISA, WB

Source:

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
At1g09390 antibody; F14J9.5GDSL esterase/lipase At1g09390 antibody; EC 3.1.1.- antibody; Extracellular lipase At1g09390 antibody
Target Names
At1g09390
Uniprot No.

Target Background

Database Links

KEGG: ath:AT1G09390

STRING: 3702.AT1G09390.1

UniGene: At.27689

Protein Families
'GDSL' lipolytic enzyme family
Subcellular Location
Secreted.

Q&A

FAQs for At1g09390 Antibody in Academic Research

Advanced Research Questions

  • How to resolve contradictory data between ELISA and Western blot results?

    • Root causes and solutions:

      • Epitope masking in WB: Use antigen retrieval via heat-mediated SDS treatment or trypsinization.

      • Non-specific binding in ELISA: Include a negative control antigen (e.g., GST-tagged irrelevant protein) to assess off-target binding .

      • Quantitative discrepancies: Normalize signals using housekeeping proteins (e.g., actin) in WB or spike-in controls in ELISA.

  • Can At1g09390 antibody be used for co-immunoprecipitation (Co-IP) in protein interaction studies?

    • Optimization strategy:

      • Use crosslinkers like DSS to stabilize transient interactions before IP.

      • Validate with mass spectrometry: Identify co-precipitated proteins and filter contaminants via SAINT/MSstats .

      • Include IgG isotype controls to rule out non-specific binding .

  • How to design a study investigating At1g09390’s role in stress response pathways?

    • Integrated workflow:

      1. Genetic: Compare At1g09390 knockout vs. overexpression lines under abiotic stress (e.g., drought).

      2. Proteomic: Combine antibody-based WB with phospho-specific staining to assess post-translational modifications.

      3. Transcriptomic: Use RNA-seq to link protein levels with gene regulatory networks .

    TechniqueKey Insight
    CRISPR-Cas9 mutantsPhenotypic analysis of gene loss
    Phospho-specific probesActivation status of signaling pathways
    Single-cell RNA-seqCell-type-specific expression
  • What computational tools aid in epitope mapping for At1g09390 antibody?

    • Pipeline:

      • Predict linear epitopes using ABCpred or BepiPred .

      • Validate via SPOT synthesis of overlapping peptides (15-mers spanning At1g09390).

      • Compare with structural models from RosettaAntibodyDesign to assess conformational epitopes .

Methodological Best Practices

  • Storage: Aliquot and store at -80°C in 50% glycerol to prevent freeze-thaw degradation .

  • Reproducibility: Use batch-specific validation for long-term studies (e.g., compare lot numbers via WB).

  • Multiplexing: Pair with antibodies against compartment markers (e.g., nuclear/chloroplast) for subcellular localization studies.

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