At4g30570 Antibody

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Description

Role in Transcriptome Integrity

In nerd-1 mutants (defective RNA 3′-end processing), At4g30570 (GENE2) exhibits readthrough transcription into upstream intergenic regions, forming chimeric mRNAs. This phenotype is specific to NERD deficiency and highlights its potential involvement in RNA processing or transcriptome surveillance .

Applications in Molecular Biology

The antibody enables:

  • Protein localization studies: Tracking the subcellular distribution of At4g30570 in Arabidopsis tissues.

  • Gene expression analysis: Quantifying protein levels under stress or developmental conditions.

  • Pathway dissection: Investigating interactions with NERD or GMPase-related pathways.

Key Research Findings

Study FocusKey Observations
GMPase ActivityAt4g30570 lacks functional complementation of hsn1 mutants, unlike At2g39770 .
Transcriptome RegulationReadthrough transcription observed in nerd-1 mutants, forming chimeric mRNAs .
N-GlycosylationGMPase mutants (hsn1, vtc1) show reduced N-glycoprotein levels, linking GMPase activity to protein modification .

Critical Notes for Experimental Design

  • Specificity: Validate antibody cross-reactivity with homologous proteins in other species.

  • Functional Relevance: Prioritize studies on At2g39770 for GMPase activity, as At4g30570 may have divergent roles .

  • Technical Considerations: Use RNAi or CRISPR to dissect gene function, complementing antibody-based approaches.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
At4g30570 antibody; F17I23.90Probable mannose-1-phosphate guanylyltransferase 3 antibody; EC 2.7.7.13 antibody
Target Names
At4g30570
Uniprot No.

Target Background

Function
This antibody targets an enzyme that catalyzes a reaction in the Smirnoff-Wheeler pathway, the primary route for ascorbate biosynthesis in plants.
Gene References Into Functions
  1. Ammonium (NH4+) inhibits GMPase activity, and the level of GMPase activity regulates Arabidopsis sensitivity to ammonium. PMID: 19011088
Database Links

KEGG: ath:AT4G30570

STRING: 3702.AT4G30570.1

UniGene: At.31823

Protein Families
Transferase hexapeptide repeat family

Q&A

Researchers investigating the At4g30570 antibody face complex challenges in validation, functional analysis, and clinical translation. Below are structured FAQs addressing key methodological considerations, supported by recent research findings and technical benchmarks.

Addressing Data Contradictions in Functional Studies

What strategies resolve conflicting results from At4g30570 antibody-based assays?

  • Triangulation methodology:

    • Compare outcomes across orthogonal techniques (e.g., flow cytometry vs. ELISA) to isolate technical artifacts .

    • Analyze antibody performance under pH gradients (4.0–8.5) to identify stability-dependent artifacts .

    • Use machine learning classifiers to distinguish target-specific signals from background noise in high-content screening .

Advanced Immunogenicity Risk Assessment

How to evaluate At4g30570’s potential to induce anti-drug antibodies (ADAs)?

  • Multi-phase assessment:

    • In silico prediction: Use tools like EpiVax to identify T-cell epitopes in the antibody sequence .

    • In vitro assays: Measure HLA-DR binding affinity in human peripheral blood mononuclear cells (PBMCs) .

    • In vivo correlation: Monitor ADA incidence vs. pharmacokinetic (PK) parameters (e.g., CmaxC_{max}, AUC) in longitudinal studies .

Figure 1: ADA impact on PK profiles shows:

  • -32% reduction in CmaxC_{max} with neutralizing antibodies (grey line)

  • -9% reduction with non-neutralizing antibodies (orange line)

Developability Profiling for Therapeutic Candidates

What parameters define At4g30570’s developability as a biologic?

  • Four critical metrics:

    • Hydrophobic interaction chromatography (HIC) retention time < 12 min

    • Aggregation propensity < 5% at 40°C (static light scattering)

    • Solubility > 50 mg/mL in PBS

    • Charge variants (CEX analysis) within ±0.5 pI units

How to balance affinity, stability, and specificity in At4g30570 design?

  • Constrained preference optimization:

    • Use AbNovo framework to simultaneously maximize:

      • Binding energy (ΔG<10\Delta G < -10 kcal/mol)

      • Thermal stability (Tm>65°CT_m > 65°C)

      • Epitope diversity (Shannon entropy H>2.5H > 2.5)

    • Apply Pareto frontier analysis to identify non-dominated solutions .

Reproducibility in Cross-Platform Studies

Why do At4g30570 antibodies show variable performance across labs?

  • Key variables:

    • Buffer composition: 0.5 M NaCl reduces non-specific binding by 40% vs. standard PBS .

    • Storage conditions: Lyophilized antibodies retain 92% activity at 24 months vs. 67% for liquid-stored .

    • Secondary antibody selection: Phage-derived reagents reduce background by 3.2× vs. traditional polyclonals .

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