GRIK1 (also known as GluR5 or mGluR5) is a transmembrane ion channel that facilitates excitatory neurotransmission by mediating calcium and sodium influx in response to glutamate binding . The FITC-conjugated antibody is a fluorescently tagged reagent used for detecting GRIK1 expression in tissues or cells, enabling visualization via fluorescence microscopy or flow cytometry.
The antibody is validated for:
Heat-mediated antigen retrieval (citrate buffer, pH6).
Blocking with 10% goat serum.
Primary antibody incubation (1 μg/mL overnight at 4°C).
Secondary antibody (biotinylated goat anti-rabbit IgG) and SABC-DAB detection.
Expression Patterns:
Functional Insights:
Cancer Research:
| Vendor | Reactivity | Price (USD) | Applications |
|---|---|---|---|
| FabGennix | Mouse/Rat | $375.00 | ELISA, WB |
| Antibodies-Online | Human | $190–$299 | ELISA, IHC, IF |
| BosterBio | Human | N/A | IHC |
| Qtonics | Human | $190–$299 | ELISA |
GRIK1 encodes the GluK1 protein, a subunit of kainate receptors that function as ligand-activated ion channels in the mammalian brain. These receptors are predominantly expressed in GABAergic interneurons of the hippocampus and participate in the formation of various kainate receptor subtypes with other subunits such as GluK2 and KA2 . The significance of GRIK1 in neurological research extends to several areas:
Glutamate receptors are the predominant excitatory neurotransmitter receptors involved in normal neurophysiological processes . Stimulation of GRIK1 leads to intracellular calcium release and activation of protein kinase C, with excessive activation being associated with psychiatric, neurological, and neurodegenerative diseases . Multiple isoforms of GRIK1 exist and may undergo RNA editing within the second transmembrane domain, potentially altering ion flow properties .
Research on GRIK1 is particularly relevant for understanding seizure disorders, as demonstrated by studies examining Grik1 gene expression and GluK1 protein levels in seizure networks such as the GASH/Sal model . This makes FITC-conjugated GRIK1 antibodies crucial tools for visualizing receptor distribution and quantifying expression levels in neurological disease models.
FITC-conjugated GRIK1 antibodies serve several critical functions in neuroscience research:
Direct Immunofluorescence: The FITC conjugation allows direct visualization of GRIK1/GluK1 in tissue sections and cultured cells without requiring secondary antibodies. This is particularly valuable for multi-labeling experiments where minimizing cross-reactivity is essential .
Flow Cytometry: FITC-conjugated antibodies enable quantification of GRIK1 expression in dissociated neural cells or cell lines expressing the receptor.
Live Cell Imaging: With proper cell permeabilization protocols, these antibodies can be used to track receptor distribution in living cells over time.
High-Resolution Microscopy: The bright fluorescence of FITC facilitates detailed mapping of receptor localization at synapses and in neuronal compartments using confocal or super-resolution microscopy.
When selecting a FITC-conjugated GRIK1 antibody for experimental applications, researchers should consider the specific binding region. For example, the antibody described in search result 1 targets amino acids 675-834 of human GRIK1 , which may offer different binding characteristics compared to antibodies targeting other regions of the protein.
The epitope selection critically influences antibody performance across different experimental paradigms:
| Epitope Region | Advantages | Limitations | Best Applications |
|---|---|---|---|
| N-Terminal (AA 10-59) | Accessible in native conformation; good for surface receptors | May not distinguish between isoforms | Flow cytometry, IF of non-permeabilized cells |
| Central Region (AA 271-450) | High conservation across species; good cross-reactivity | May require denaturation for access | WB, IHC of fixed tissues |
| C-Terminal (AA 675-834) | Isoform-specific detection possible | May be obscured in protein complexes | WB, IP, IF of permeabilized cells |
The epitope selection affects antibody performance in several ways. Antibodies targeting the extracellular N-terminal domain (such as those recognizing AA 10-59) are particularly useful for detecting surface-expressed receptors in living cells . In contrast, antibodies recognizing the C-terminal region (AA 675-834) may be more effective for distinguishing between splice variants but might require cell permeabilization for access .
For the FITC-conjugated antibody targeting AA 675-834 described in search result 1, researchers should note that this epitope is located in the intracellular C-terminal domain of GRIK1. This makes it particularly suitable for investigating intracellular protein pools following permeabilization but less ideal for detecting surface-expressed receptors in non-permeabilized preparations.
Based on validated protocols from the literature, here are optimized methods for immunofluorescence studies using FITC-conjugated GRIK1 antibodies:
For Fixed Tissue Sections:
Tissue Preparation: Perfuse animals with 4% paraformaldehyde in PBS, post-fix for 12-24 hours, and prepare 30-40 μm sections using a vibratome or cryostat.
Antigen Retrieval: Heat-mediated antigen retrieval in citrate buffer (pH 6.0) for 20 minutes is critical for optimal detection . This step significantly improves antibody access to the epitope, particularly for formalin-fixed, paraffin-embedded tissues.
Blocking: Block sections with 10% normal serum (from the same species as the secondary antibody) in PBS containing 0.3% Triton X-100 for 1-2 hours at room temperature .
Primary Antibody Incubation: For directly FITC-conjugated GRIK1 antibodies, dilute to 1-5 μg/ml in blocking buffer and incubate sections overnight at 4°C . For unconjugated primary antibodies, follow with appropriate secondary antibody incubation.
Counterstaining: DAPI (1 μg/ml) can be used for nuclear counterstaining. For co-localization studies, include markers for specific neuronal populations (e.g., GABAergic interneurons) using antibodies raised in different host species with distinct fluorophores.
Mounting and Imaging: Mount sections using anti-fade mounting medium and image using confocal microscopy with appropriate filter sets (FITC: excitation ~495 nm, emission ~520 nm).
For optimal results, researchers should validate the antibody dilution and incubation conditions for their specific tissue and fixation method. The protocol may need adjustment when examining specific brain regions like the cerebellum, hippocampus, or inferior and superior colliculi, which show differential expression of GRIK1 .
Antibody validation is critical for ensuring experimental reliability. For GRIK1 antibodies, multiple validation strategies should be employed:
Genetic Controls:
Use tissues/cells from GRIK1 knockout models or GRIK1-knockdown cells (via siRNA/shRNA)
Compare staining patterns with wild-type samples to identify non-specific binding
Peptide Competition Assays:
Pre-incubate the antibody with excess immunizing peptide (e.g., the 675-834AA region for the antibody in search result 1)
The specific signal should be abolished or significantly reduced
Multiple Antibody Validation:
Compare staining patterns using antibodies targeting different epitopes of GRIK1
Consistent patterns across different antibodies suggest specific detection
Western Blot Correlation:
Cross-Species Validation:
The importance of validation is exemplified by the approach taken in the GASH/Sal seizure model study, where researchers performed multiple sequence alignment analysis to confirm epitope conservation before applying an antibody developed against human GluK1 to hamster tissue samples .
When designing multi-color immunofluorescence experiments with FITC-conjugated GRIK1 antibodies, several technical considerations are crucial:
Spectral Overlap Management:
FITC emission (peak ~520 nm) may overlap with other green fluorophores
For multi-color experiments, pair FITC with fluorophores having minimal spectral overlap such as Cy3 (red), Cy5 (far-red), or Alexa 647
Antibody Host Species Selection:
When combining with other primary antibodies, select antibodies raised in different host species (e.g., FITC-conjugated rabbit anti-GRIK1 can be combined with mouse, goat, or rat antibodies against other targets)
For the antibody in search result 1 (rabbit host), combine with mouse, rat, or goat primary antibodies
Signal Strength Balancing:
FITC can photobleach more rapidly than some other fluorophores
Consider imaging FITC channels first in sequential imaging protocols
Adjust exposure times to balance signal intensity across different channels
Autofluorescence Mitigation:
Brain tissue often exhibits autofluorescence in the green spectrum, which can interfere with FITC detection
Consider using Sudan Black B (0.1% in 70% ethanol) treatment post-immunostaining to reduce autofluorescence
Controls for Multi-labeling:
Include single-label controls to verify signal specificity
Perform secondary-only controls to identify non-specific binding
For co-localization studies examining GRIK1 distribution relative to synaptic markers or other glutamate receptor subunits, spatial resolution becomes critical. In such cases, super-resolution techniques like STORM or STED may provide more definitive results than conventional confocal microscopy.
FITC-conjugated GRIK1 antibodies provide valuable tools for investigating the dynamic processes of receptor trafficking and internalization:
Live-Cell Imaging Protocol:
Transfect neurons or cell lines with GRIK1 constructs containing extracellular tags (e.g., FLAG, HA) accessible to antibodies without permeabilization
Label surface receptors with anti-tag antibodies conjugated to a pH-sensitive fluorophore (such as pHluorin)
Apply FITC-conjugated GRIK1 antibodies after permeabilization to label the total receptor pool
The ratio of surface to total receptor provides a quantitative measure of receptor trafficking
Pulse-Chase Experiments:
Label surface GRIK1 with FITC-conjugated antibodies against extracellular epitopes at 4°C (to prevent internalization)
Warm cells to 37°C and allow internalization for various time periods
Remove remaining surface antibodies with acid wash
Quantify internalized FITC signal over time
This approach is particularly valuable for studying how receptor trafficking is altered in disease models. For instance, in epilepsy models like the GASH/Sal hamster, altered trafficking of kainate receptors could contribute to hyperexcitability . Time-lapse imaging allows visualization of receptor movement in response to stimuli or drug treatments.
For quantitative analysis, researchers can calculate the internalization rate by measuring the decrease in surface fluorescence or increase in intracellular puncta over time. This can be correlated with electrophysiological recordings to link trafficking to functional changes in receptor-mediated currents.
Regional variations in GRIK1 detection require careful interpretation due to several biological and methodological factors:
Studies have demonstrated differential GRIK1/GluK1 expression across brain regions, with particularly high specificity in the cerebellum . When interpreting these variations, researchers should consider:
To differentiate true biological variation from methodological artifacts, researchers should systematically compare multiple detection methods (e.g., immunohistochemistry, in situ hybridization, and Western blotting) within the same study. The approach taken in the GASH/Sal seizure model research provides a good example, where both Grik1 gene expression and GluK1 protein levels were assessed across multiple brain regions .
Discrepancies between Western blot (WB) and immunofluorescence (IF) results are common challenges when working with GRIK1 antibodies and may arise from several factors:
Common Discrepancies and Solutions:
Strong WB Signal but Weak IF Signal:
Strong IF Signal but Weak WB Signal:
Possible Cause: Denaturation-sensitive epitope
Solution: Modify protein extraction method (non-denaturing conditions) or try native PAGE
Validation Approach: Verify IF specificity using GRIK1 knockout or knockdown controls
Different Molecular Weight in WB than Expected (104 kDa):
Possible Cause: Alternative splicing, post-translational modifications, or proteolytic processing
Solution: Use different extraction buffers with protease inhibitors; compare reducing vs. non-reducing conditions
Validation Approach: Literature review of known GRIK1 isoforms and their molecular weights
Different Regional or Cellular Distribution Patterns:
Possible Cause: Differential subcellular localization affecting extraction efficiency
Solution: Compare detergent-soluble vs. insoluble fractions; use subcellular fractionation
Validation Approach: Correlate with mRNA expression data from in situ hybridization
For optimal troubleshooting, researchers should consider that GRIK1 undergoes RNA editing within the second transmembrane domain , which may affect antibody recognition in a conformation-dependent manner. Additionally, different extraction methods may preferentially isolate specific protein pools (surface vs. intracellular, synaptic vs. extrasynaptic).
Verification with multiple antibodies targeting different epitopes is particularly important. For example, comparing results from antibodies targeting the N-terminal (AA 10-59), central region (AA 271-450), and C-terminal domain (AA 675-834) can help identify region-specific detection issues .
FITC-conjugated GRIK1 antibodies offer valuable tools for investigating kainate receptor involvement in neurological disorders:
Epilepsy Models:
Quantify changes in GRIK1 expression and distribution in seizure networks
The GASH/Sal hamster model demonstrates how GRIK1/GluK1 expression differs across brain regions involved in seizure propagation
FITC conjugation allows direct visualization of potential receptor redistribution during epileptogenesis
Neurodegenerative Diseases:
Track GRIK1 expression changes in Alzheimer's and Parkinson's disease models
FITC-labeled antibodies can reveal co-localization with disease-specific markers (e.g., amyloid plaques, tau tangles)
Flow cytometry with FITC-conjugated antibodies can quantify receptor levels in isolated neurons from disease models
Psychiatric Disorders:
Brain Tumors:
For these applications, the direct fluorescence of FITC-conjugated antibodies offers advantages in multi-labeling studies where minimizing cross-reactivity between multiple antibodies is critical. When studying disease models, it's essential to include appropriate controls (age-matched, gender-matched) and validate findings across multiple techniques (e.g., combining IF with Western blotting and qPCR for GRIK1 mRNA).
Recent studies have successfully used anti-GRIK1 antibodies for IHC analysis in human glioma and lung cancer tissues, demonstrating their utility in cancer research . The detailed protocols provided in these studies can be adapted for FITC-conjugated antibodies with appropriate filter sets for fluorescence detection.
Reliable quantification of GRIK1 expression changes using FITC-conjugated antibodies requires rigorous methodologies:
Tissue Section Quantification Methods:
Mean Fluorescence Intensity (MFI) Analysis:
Define regions of interest (ROIs) corresponding to specific brain structures
Measure average pixel intensity within ROIs
Control for background using adjacent non-specific areas
Compare disease models with controls using appropriate statistical tests
Puncta Analysis for Synaptic Localization:
Identify GRIK1-positive puncta using automated thresholding algorithms
Quantify puncta density (number per unit area) and size
Co-localization with synaptic markers (e.g., PSD-95, synaptophysin) can distinguish synaptic vs. extrasynaptic receptors
Cell-Type Specific Quantification:
Flow Cytometry Approaches:
Single-Cell Suspension Preparation:
Dissociate brain tissue into single cells using enzymatic digestion
Perform surface and intracellular staining with FITC-conjugated GRIK1 antibodies
Quantify receptor expression on a per-cell basis
Multi-Parameter Analysis:
Combine FITC-conjugated GRIK1 antibodies with markers for cell type, activation state, or other glutamate receptor subunits
Allows identification of cell populations with altered receptor expression
Western Blot Quantification:
Subcellular Fractionation:
Separate membrane and cytosolic fractions to distinguish surface vs. intracellular receptor pools
Compare expression ratios between fractions in disease vs. control samples
Normalization Strategies:
Normalize GRIK1 signal to loading controls (β-actin, GAPDH)
For membrane proteins, normalization to Na+/K+-ATPase may be more appropriate
When comparing results across techniques, researchers should be aware that each method measures different aspects of GRIK1 expression. For example, Western blotting quantifies total protein levels, while immunofluorescence provides spatial information but may be influenced by antibody accessibility in different cellular compartments.
Co-localization studies to investigate GRIK1 interactions with other synaptic proteins require careful experimental design:
Experimental Design Considerations:
Fluorophore Selection:
Pair FITC-conjugated GRIK1 antibodies (emission peak ~520 nm) with spectrally distinct fluorophores:
Cy3 (emission ~570 nm) for moderate spectral separation
Cy5 or Alexa 647 (emission > 650 nm) for maximal spectral separation
Avoid fluorophores with significant overlap with FITC (e.g., YFP, Oregon Green)
Sequential Staining Protocol:
For antibodies from the same host species (e.g., multiple rabbit antibodies):
Apply first primary antibody (e.g., FITC-conjugated GRIK1)
Block with excess unlabeled anti-rabbit Fab fragments
Apply second primary antibody with different conjugate
Synapse-Specific Markers:
Presynaptic markers: Synaptophysin, Bassoon, vGlut1 (glutamatergic), vGAT (GABAergic)
Postsynaptic markers: PSD-95, Homer1, Gephyrin
Combine with GRIK1 to determine synaptic vs. extrasynaptic localization
Quantitative Co-localization Analysis:
Pixel-Based Methods:
Pearson's correlation coefficient: Measures linear correlation between fluorescence intensities
Manders' overlap coefficient: Quantifies proportion of overlapping pixels
Thresholded overlap analysis: Focuses on pixels above background threshold
Object-Based Methods:
Identify discrete puncta in each channel
Measure center-to-center distances between nearest neighbors
Define co-localization based on distance threshold (typically <200 nm for confocal, <50 nm for super-resolution)
Statistical Validation:
Random shuffling of images to establish baseline co-localization by chance
Costes method for automated threshold selection and significance testing
Advanced Imaging Approaches:
Super-Resolution Microscopy:
STED, STORM, or PALM for nanoscale resolution (~20-50 nm)
Critical for distinguishing true molecular interactions from proximity
Note: FITC may not be optimal for all super-resolution techniques; consider antibodies with alternative fluorophores for these applications
Proximity Ligation Assay (PLA):
Detects proteins within 40 nm of each other
Combines antibody binding with rolling circle amplification
Provides higher specificity than conventional co-localization
For GRIK1, co-localization studies are particularly valuable for investigating its association with other kainate receptor subunits (GluK2, KA2) with which it forms functional heteromeric channels , as well as its relationship to scaffolding proteins that regulate receptor trafficking and synaptic anchoring.
Optimizing fixation and permeabilization is critical for successful GRIK1 detection across diverse sample types:
For Cultured Neurons/Cell Lines:
| Fixation Method | Advantages | Limitations | Best For |
|---|---|---|---|
| 4% PFA, 10 min, RT | Preserves morphology | May mask some epitopes | General GRIK1 detection |
| Cold methanol, 10 min, -20°C | Better for some intracellular epitopes | Can distort membrane proteins | C-terminal domain detection |
| 2% PFA + 0.1% glutaraldehyde | Superior ultrastructure preservation | Stronger autofluorescence | EM correlative studies |
Permeabilization Protocols:
For Membrane Proteins (Including GRIK1 Extracellular Domains):
Mild detergent: 0.1% Triton X-100 for 5-10 minutes
Alternative: 0.1% saponin (reversible, preserves membrane integrity)
For Intracellular Domains (C-terminal GRIK1 Epitopes):
Stronger permeabilization: 0.3% Triton X-100 for 10-15 minutes
Alternative: 0.1% SDS for 5 minutes for strongly cross-linked samples
For Tissue Sections:
Fresh-Frozen Sections:
Fix post-sectioning with 4% PFA for 10-15 minutes
Brief permeabilization (0.1% Triton X-100, 5-10 minutes)
Best for preserving sensitive epitopes
Perfusion-Fixed Tissue:
Perfuse with 4% PFA in PBS
Post-fix for 12-24 hours (shorter for smaller samples)
Section at 30-40 μm thickness
Permeabilize with 0.3% Triton X-100 in PBS for 30 minutes
Paraffin-Embedded Sections:
The epitope targeted by the antibody significantly influences the optimal protocol. For the FITC-conjugated antibody targeting AA 675-834 described in search result 1, which recognizes a C-terminal intracellular domain, more robust permeabilization may be necessary compared to antibodies targeting extracellular domains .
For co-labeling studies, it's important to verify that the chosen fixation and permeabilization protocol is compatible with all target proteins, as some may require specialized conditions for optimal detection.
Brain tissue presents particular challenges for fluorescence microscopy due to lipofuscin and other autofluorescent components. Several strategies can optimize signal-to-noise ratio when using FITC-conjugated antibodies:
Pre-Treatment Approaches:
Autofluorescence Quenching:
Sudan Black B (0.1-0.3% in 70% ethanol) for 5-10 minutes after immunostaining
Copper sulfate (1-5 mM CuSO₄ in 50 mM ammonium acetate) treatment
TrueBlack® Lipofuscin Autofluorescence Quencher (follow manufacturer's protocol)
Photobleaching Before Imaging:
Expose tissue sections to strong illumination in the autofluorescence wavelength range
Autofluorescence typically bleaches faster than specific FITC signal
Antibody Optimization:
Titration Experiments:
Test dilution series (0.5-10 μg/ml) of FITC-conjugated antibody
Identify concentration that maximizes specific signal while minimizing background
Blocking Enhancement:
Extended blocking (2-3 hours) with 10% normal serum
Addition of 0.1-0.3% Triton X-100 and 0.05% Tween-20 to blocking buffer
5% BSA can reduce non-specific binding
Imaging Strategies:
Spectral Unmixing:
Acquire autofluorescence spectrum from unstained tissue
Computationally separate autofluorescence from specific FITC signal
Particularly effective on confocal systems with spectral detectors
Time-Gated Detection:
Utilize the longer fluorescence lifetime of FITC compared to autofluorescence
Requires specialized time-resolved microscopy equipment
Optimal Filter Selection:
Use narrow bandpass filters centered on FITC emission peak (~520 nm)
Higher quality filters with improved optical density outside the passband
Image Processing Approaches:
Background Subtraction:
Acquire images from adjacent unlabeled sections
Subtract background pattern from experimental images
Thresholding and Segmentation:
Apply algorithms to distinguish specific signal based on intensity and morphology
Machine learning-based approaches can be trained to recognize true signal
Researchers should note that when studying structures with high intrinsic autofluorescence, such as aged brain tissue or regions with high lipofuscin content, switching to antibodies with red or far-red fluorophores may be preferable to FITC conjugates, as autofluorescence is typically lower in these spectral ranges.
Proper storage and handling of FITC-conjugated GRIK1 antibodies are essential for maintaining sensitivity and specificity over time:
Storage Conditions:
Temperature:
Store at -20°C for long-term storage (months to years)
Avoid repeated freeze-thaw cycles (aliquot upon receipt)
Working stocks can be kept at 4°C for 1-2 weeks
Light Protection:
FITC is particularly susceptible to photobleaching
Store in amber vials or wrap containers in aluminum foil
Minimize exposure to light during handling
Buffer Composition:
Handling Recommendations:
Thawing Protocol:
Thaw frozen aliquots completely at room temperature
Gentle mixing (avoid vortexing) to ensure homogeneity
Brief centrifugation to collect liquid at the bottom of the tube
Dilution Practices:
Prepare working dilutions immediately before use
Use high-quality, filtered buffers
Include carrier protein (0.5-1% BSA) in dilution buffer
Contamination Prevention:
Use sterile technique when handling antibody stocks
Filter buffers through 0.22 μm filters before use
Avoid bacterial contamination which can degrade antibodies
Stability Monitoring:
Performance Testing:
Periodically test antibody performance on positive control samples
Compare signal intensity and background with previous results
Consider including standardized positive controls in each experiment
Physical Indicators of Deterioration:
Visual inspection for precipitates or color changes
Increased turbidity may indicate protein aggregation
Significant color change can signal FITC degradation
Functionality Assessment:
Flow cytometry analysis of a standard sample can quantitatively track sensitivity loss
Western blot with titration series can identify sensitivity changes
For the FITC-conjugated GRIK1 antibody described in search result 1, which is purified to >95% by Protein G purification , proper storage is particularly important to maintain this high purity and prevent degradation or aggregation that could increase non-specific binding.
When planning long-term studies, researchers should consider preparing multiple small aliquots (10-20 μl) of antibody upon receipt to minimize freeze-thaw cycles and maintain consistent performance throughout the project duration.
FITC-conjugated GRIK1 antibodies are poised to enable several promising research directions:
Single-Molecule Trafficking Studies:
Combining FITC-conjugated antibodies with quantum dots or photoactivatable fluorophores could enable long-term tracking of individual GRIK1-containing receptors
This approach would provide unprecedented insights into receptor mobility, clustering, and activity-dependent redistribution
Circuit-Specific Analysis in Neurological Disorders:
Pharmacological Modulation Visualization:
Real-time imaging of receptor redistribution in response to therapeutic compounds
Could facilitate development of drugs targeting kainate receptor trafficking rather than just function
Correlation of Structure and Function:
Combined electrophysiology and high-resolution imaging to link GRIK1 localization with functional properties
Patch-clamp fluorometry approaches could simultaneously measure receptor currents and visualize conformational changes
Heteromer-Specific Targeting:
Translation to Clinical Diagnostics:
Adaptation of FITC-GRIK1 antibody protocols for patient-derived samples
Could serve as biomarkers for certain neurological or psychiatric conditions
These advanced applications build upon the technical foundations established in current research while pushing toward more integrative, functional, and clinically relevant approaches. As neuroscience increasingly focuses on understanding dynamic cellular processes in intact circuits, the ability to specifically visualize GRIK1 distribution and trafficking will become increasingly valuable for both basic and translational research.