GRIK1 Antibody, FITC conjugated

Shipped with Ice Packs
In Stock

Description

Overview

GRIK1 (also known as GluR5 or mGluR5) is a transmembrane ion channel that facilitates excitatory neurotransmission by mediating calcium and sodium influx in response to glutamate binding . The FITC-conjugated antibody is a fluorescently tagged reagent used for detecting GRIK1 expression in tissues or cells, enabling visualization via fluorescence microscopy or flow cytometry.

Applications

The antibody is validated for:

  • ELISA: Detecting GRIK1 in lysates or purified proteins .

  • IHC: Visualizing GRIK1 in paraffin-embedded tissues (e.g., glioma, lung cancer, thyroid cancer) .

  • IF: Co-localizing GRIK1 with synaptic markers in neurons .

Protocols (from BosterBio ):

  1. Heat-mediated antigen retrieval (citrate buffer, pH6).

  2. Blocking with 10% goat serum.

  3. Primary antibody incubation (1 μg/mL overnight at 4°C).

  4. Secondary antibody (biotinylated goat anti-rabbit IgG) and SABC-DAB detection.

Research Findings

  • Expression Patterns:

    • Detected in human glioma, lung cancer, thyroid cancer, and mouse brain tissues .

    • Localizes to cell junctions, synapses, and the cell membrane .

  • Functional Insights:

    • Mediates extracellular-glutamate-gated ion channel activity .

    • Linked to neuroplasticity and synaptic transmission .

  • Cancer Research:

    • Overexpression observed in glioma and lung cancer, suggesting a role in tumor progression .

Vendor-Specific Variants

VendorReactivityPrice (USD)Applications
FabGennix Mouse/Rat$375.00ELISA, WB
Antibodies-Online Human$190–$299ELISA, IHC, IF
BosterBio HumanN/AIHC
Qtonics Human$190–$299ELISA

References

  1. FabGennix. GRIK1 Antibody FITC-Conjugated. [Online]. Available: Link

  2. Antibodies-Online. GRIK1 antibody (AA 675-834) (FITC). [Online]. Available: Link

  3. BosterBio. Anti-GRIK1 Antibody Picoband®. [Online]. Available: Link

  4. Qtonics. GRIK1 Antibody, FITC conjugated. [Online]. Available: Link

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we are able to ship products within 1-3 business days of receiving your order. Delivery times may vary depending on the purchasing method or location. For specific delivery times, please consult your local distributors.
Synonyms
EAA3 antibody; EEA3 antibody; Excitatory amino acid receptor 3 antibody; GLR5 antibody; GluR-5 antibody; GluR5 antibody; GluR6 antibody; GluR7 antibody; Glutamate receptor 5 antibody; Glutamate receptor antibody; Glutamate receptor ionotropic kainate 1 antibody; GRIK1 antibody; GRIK1_HUMAN antibody; Human glutamate receptor GLUR5 antibody; ionotropic kainate 1 antibody; OTTHUMP00000096569 antibody
Target Names
Uniprot No.

Target Background

Function
The GRIK1 antibody, FITC conjugated, targets the ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at numerous synapses within the central nervous system. The binding of the excitatory neurotransmitter L-glutamate triggers a conformational change, leading to the opening of the cation channel. This process converts the chemical signal into an electrical impulse. Subsequently, the receptor undergoes rapid desensitization and enters a transient inactive state, characterized by the presence of bound agonist. This receptor may play a role in the transmission of light information from the retina to the hypothalamus.
Gene References Into Functions
  1. Studies have shown that DRD2 A2/A1, DRD3 Ser9Gly, DbetaH -1021C>T, OPRM1 A118G, and GRIK1 rs2832407C>A are not associated with alcoholism alone or in combination. PMID: 27447243
  2. Research indicates that in participants with the GRIK1 rs2832407*CC genotype, topiramate treatment enhances self-efficacy and reduces heavy drinking. PMID: 25496338
  3. Findings suggest that SNPs in the GRIK1 gene are associated with altered cue-induced brain activation related to craving for alcohol and relapse risk. PMID: 26289945
  4. Results suggest that the extracellular N-terminal region, including the two CUB domains, is primarily responsible for the distinct regulatory effects of Neto1 and Neto2 on the desensitization properties of GluK1 homomeric receptors. PMID: 26277340
  5. This study demonstrated that gene-gene interactions of components from different systems associated with nicotine reinforcing effects, such as OPRM1 and GRIK1, rather than a single gene polymorphism, are associated with smoking behavior. PMID: 25941919
  6. The study found that among rs2832407*C of GRIK1 homozygotes, topiramate treatment yielded the most significant reductions in the anticipated positive effects of drinking and desire to drink during the treatment period. PMID: 24786948
  7. These results suggest that topiramate's impact on drinking behavior, where the GluK1-containing kainate receptor appears to play a crucial role, can be dissociated from its effect on weight. PMID: 24978347
  8. Topiramate treatment for alcohol dependence was considerably more effective in rs2832407 C-allele homozygotes. PMID: 24525690
  9. Reduced Homer binding to mGluR5 supports an inhibitory role for Homer interactions with mGluR5 in mediating neuropathy. PMID: 23685007
  10. Using the SNaPshot assay, evidence was found for allelic nondisjunction at rs363506 in the GRIK1 gene and rs2834235 and rs7283354 in the GARS-AIRS-GART gene in Down syndrome in India. PMID: 22931243
  11. The association at rs455804 implicates GRIK1 as a novel susceptibility gene for HBV-related HCC, suggesting the involvement of glutamate signaling in the development of HBV-related HCC. PMID: 22807686
  12. GRIK1 rs469472 is potentially associated with schizophrenia in independent case-control and family samples. PMID: 22730074
  13. Presynaptic Gluk1 kainate receptors that reduce transmitter release downstream are independent of divalent calcium ion Ca2+ influx. PMID: 20848601
  14. The amino acid sequence of the GluK1 kainate receptor near or within the carboxyl-terminal endoplasmic reticulum retention signal sequence, which affects receptor trafficking and/or expression, does not affect channel gating properties. PMID: 22191429
  15. The GRIK1 promoter is activated by Trichostatin A (TSA) treatment and by serum depletion, according to promoter reporter assays in HEK 293 cells. PMID: 20494980
  16. Findings show GluR5 was upregulated in the hippocampus, but not in the temporal neocortex, of patients with temporal lobe epilepsy (TLE) compared to controls; mossy fiber sprouting in the hippocampus of TLE patients was correlated with GluR5 upregulation. PMID: 19941835
  17. Variation in the 3' portion of the gene encoding the GluR5 kainate receptor subunit contributes to the risk for alcohol dependence. PMID: 19320626
  18. GluK1 kainate receptor polymorphisms are associated with Down syndrome. PMID: 19893199
  19. GRIK1 does not play a significant role in schizophrenia pathogenesis in the Japanese population. PMID: 11702055
  20. There are trafficking signals in the C-terminal domain of GluR5-2b; alternative splicing is a crucial mechanism regulating KAR function. PMID: 14527949
  21. Two amino acids, competitive GluR5 KA receptor antagonists, exhibited high GluR5 receptor affinity over other glutamate receptors. PMID: 15974569
  22. This kainate receptor subunit appears to be selectively altered in the anterior cingulate cortex in schizophrenia and bipolar disorder. PMID: 17698324

Show More

Hide All

Database Links

HGNC: 4579

OMIM: 138245

KEGG: hsa:2897

STRING: 9606.ENSP00000382791

UniGene: Hs.664641

Protein Families
Glutamate-gated ion channel (TC 1.A.10.1) family, GRIK1 subfamily
Subcellular Location
Cell membrane; Multi-pass membrane protein. Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein.
Tissue Specificity
Most abundant in the cerebellum and the suprachiasmatic nuclei (SCN) of the hypothalamus.

Q&A

What is the significance of GRIK1 in neurological research?

GRIK1 encodes the GluK1 protein, a subunit of kainate receptors that function as ligand-activated ion channels in the mammalian brain. These receptors are predominantly expressed in GABAergic interneurons of the hippocampus and participate in the formation of various kainate receptor subtypes with other subunits such as GluK2 and KA2 . The significance of GRIK1 in neurological research extends to several areas:

Glutamate receptors are the predominant excitatory neurotransmitter receptors involved in normal neurophysiological processes . Stimulation of GRIK1 leads to intracellular calcium release and activation of protein kinase C, with excessive activation being associated with psychiatric, neurological, and neurodegenerative diseases . Multiple isoforms of GRIK1 exist and may undergo RNA editing within the second transmembrane domain, potentially altering ion flow properties .

Research on GRIK1 is particularly relevant for understanding seizure disorders, as demonstrated by studies examining Grik1 gene expression and GluK1 protein levels in seizure networks such as the GASH/Sal model . This makes FITC-conjugated GRIK1 antibodies crucial tools for visualizing receptor distribution and quantifying expression levels in neurological disease models.

What are the main applications for GRIK1 antibody with FITC conjugation?

FITC-conjugated GRIK1 antibodies serve several critical functions in neuroscience research:

  • Direct Immunofluorescence: The FITC conjugation allows direct visualization of GRIK1/GluK1 in tissue sections and cultured cells without requiring secondary antibodies. This is particularly valuable for multi-labeling experiments where minimizing cross-reactivity is essential .

  • Flow Cytometry: FITC-conjugated antibodies enable quantification of GRIK1 expression in dissociated neural cells or cell lines expressing the receptor.

  • Live Cell Imaging: With proper cell permeabilization protocols, these antibodies can be used to track receptor distribution in living cells over time.

  • High-Resolution Microscopy: The bright fluorescence of FITC facilitates detailed mapping of receptor localization at synapses and in neuronal compartments using confocal or super-resolution microscopy.

When selecting a FITC-conjugated GRIK1 antibody for experimental applications, researchers should consider the specific binding region. For example, the antibody described in search result 1 targets amino acids 675-834 of human GRIK1 , which may offer different binding characteristics compared to antibodies targeting other regions of the protein.

How does epitope selection affect GRIK1 antibody performance in different applications?

The epitope selection critically influences antibody performance across different experimental paradigms:

Epitope RegionAdvantagesLimitationsBest Applications
N-Terminal (AA 10-59)Accessible in native conformation; good for surface receptorsMay not distinguish between isoformsFlow cytometry, IF of non-permeabilized cells
Central Region (AA 271-450)High conservation across species; good cross-reactivityMay require denaturation for accessWB, IHC of fixed tissues
C-Terminal (AA 675-834)Isoform-specific detection possibleMay be obscured in protein complexesWB, IP, IF of permeabilized cells

The epitope selection affects antibody performance in several ways. Antibodies targeting the extracellular N-terminal domain (such as those recognizing AA 10-59) are particularly useful for detecting surface-expressed receptors in living cells . In contrast, antibodies recognizing the C-terminal region (AA 675-834) may be more effective for distinguishing between splice variants but might require cell permeabilization for access .

For the FITC-conjugated antibody targeting AA 675-834 described in search result 1, researchers should note that this epitope is located in the intracellular C-terminal domain of GRIK1. This makes it particularly suitable for investigating intracellular protein pools following permeabilization but less ideal for detecting surface-expressed receptors in non-permeabilized preparations.

What are the optimal protocols for using FITC-conjugated GRIK1 antibodies in immunofluorescence studies?

Based on validated protocols from the literature, here are optimized methods for immunofluorescence studies using FITC-conjugated GRIK1 antibodies:

For Fixed Tissue Sections:

  • Tissue Preparation: Perfuse animals with 4% paraformaldehyde in PBS, post-fix for 12-24 hours, and prepare 30-40 μm sections using a vibratome or cryostat.

  • Antigen Retrieval: Heat-mediated antigen retrieval in citrate buffer (pH 6.0) for 20 minutes is critical for optimal detection . This step significantly improves antibody access to the epitope, particularly for formalin-fixed, paraffin-embedded tissues.

  • Blocking: Block sections with 10% normal serum (from the same species as the secondary antibody) in PBS containing 0.3% Triton X-100 for 1-2 hours at room temperature .

  • Primary Antibody Incubation: For directly FITC-conjugated GRIK1 antibodies, dilute to 1-5 μg/ml in blocking buffer and incubate sections overnight at 4°C . For unconjugated primary antibodies, follow with appropriate secondary antibody incubation.

  • Counterstaining: DAPI (1 μg/ml) can be used for nuclear counterstaining. For co-localization studies, include markers for specific neuronal populations (e.g., GABAergic interneurons) using antibodies raised in different host species with distinct fluorophores.

  • Mounting and Imaging: Mount sections using anti-fade mounting medium and image using confocal microscopy with appropriate filter sets (FITC: excitation ~495 nm, emission ~520 nm).

For optimal results, researchers should validate the antibody dilution and incubation conditions for their specific tissue and fixation method. The protocol may need adjustment when examining specific brain regions like the cerebellum, hippocampus, or inferior and superior colliculi, which show differential expression of GRIK1 .

How can researchers validate the specificity of GRIK1 antibodies in their experimental systems?

Antibody validation is critical for ensuring experimental reliability. For GRIK1 antibodies, multiple validation strategies should be employed:

  • Genetic Controls:

    • Use tissues/cells from GRIK1 knockout models or GRIK1-knockdown cells (via siRNA/shRNA)

    • Compare staining patterns with wild-type samples to identify non-specific binding

  • Peptide Competition Assays:

    • Pre-incubate the antibody with excess immunizing peptide (e.g., the 675-834AA region for the antibody in search result 1)

    • The specific signal should be abolished or significantly reduced

  • Multiple Antibody Validation:

    • Compare staining patterns using antibodies targeting different epitopes of GRIK1

    • Consistent patterns across different antibodies suggest specific detection

  • Western Blot Correlation:

    • Verify that the antibody detects a band of appropriate molecular weight (~104 kDa for full-length GRIK1)

    • Compare expression levels across tissues known to differentially express GRIK1

  • Cross-Species Validation:

    • If studying non-human tissue, perform sequence alignment analysis to confirm epitope conservation

    • For example, when using human-targeted antibodies in hamster tissue, sequence alignment confirmed epitope conservation as described in search result 2

The importance of validation is exemplified by the approach taken in the GASH/Sal seizure model study, where researchers performed multiple sequence alignment analysis to confirm epitope conservation before applying an antibody developed against human GluK1 to hamster tissue samples .

What considerations are important when using FITC-conjugated antibodies in multi-color immunofluorescence?

When designing multi-color immunofluorescence experiments with FITC-conjugated GRIK1 antibodies, several technical considerations are crucial:

  • Spectral Overlap Management:

    • FITC emission (peak ~520 nm) may overlap with other green fluorophores

    • For multi-color experiments, pair FITC with fluorophores having minimal spectral overlap such as Cy3 (red), Cy5 (far-red), or Alexa 647

  • Antibody Host Species Selection:

    • When combining with other primary antibodies, select antibodies raised in different host species (e.g., FITC-conjugated rabbit anti-GRIK1 can be combined with mouse, goat, or rat antibodies against other targets)

    • For the antibody in search result 1 (rabbit host), combine with mouse, rat, or goat primary antibodies

  • Signal Strength Balancing:

    • FITC can photobleach more rapidly than some other fluorophores

    • Consider imaging FITC channels first in sequential imaging protocols

    • Adjust exposure times to balance signal intensity across different channels

  • Autofluorescence Mitigation:

    • Brain tissue often exhibits autofluorescence in the green spectrum, which can interfere with FITC detection

    • Consider using Sudan Black B (0.1% in 70% ethanol) treatment post-immunostaining to reduce autofluorescence

  • Controls for Multi-labeling:

    • Include single-label controls to verify signal specificity

    • Perform secondary-only controls to identify non-specific binding

For co-localization studies examining GRIK1 distribution relative to synaptic markers or other glutamate receptor subunits, spatial resolution becomes critical. In such cases, super-resolution techniques like STORM or STED may provide more definitive results than conventional confocal microscopy.

How can FITC-conjugated GRIK1 antibodies be used to study receptor trafficking and internalization?

FITC-conjugated GRIK1 antibodies provide valuable tools for investigating the dynamic processes of receptor trafficking and internalization:

Live-Cell Imaging Protocol:

  • Transfect neurons or cell lines with GRIK1 constructs containing extracellular tags (e.g., FLAG, HA) accessible to antibodies without permeabilization

  • Label surface receptors with anti-tag antibodies conjugated to a pH-sensitive fluorophore (such as pHluorin)

  • Apply FITC-conjugated GRIK1 antibodies after permeabilization to label the total receptor pool

  • The ratio of surface to total receptor provides a quantitative measure of receptor trafficking

Pulse-Chase Experiments:

  • Label surface GRIK1 with FITC-conjugated antibodies against extracellular epitopes at 4°C (to prevent internalization)

  • Warm cells to 37°C and allow internalization for various time periods

  • Remove remaining surface antibodies with acid wash

  • Quantify internalized FITC signal over time

This approach is particularly valuable for studying how receptor trafficking is altered in disease models. For instance, in epilepsy models like the GASH/Sal hamster, altered trafficking of kainate receptors could contribute to hyperexcitability . Time-lapse imaging allows visualization of receptor movement in response to stimuli or drug treatments.

For quantitative analysis, researchers can calculate the internalization rate by measuring the decrease in surface fluorescence or increase in intracellular puncta over time. This can be correlated with electrophysiological recordings to link trafficking to functional changes in receptor-mediated currents.

What are the critical differences in results when comparing GRIK1 detection across brain regions and how should researchers interpret regional variations?

Regional variations in GRIK1 detection require careful interpretation due to several biological and methodological factors:

Brain RegionExpected GRIK1 ExpressionMethodological ConsiderationsBiological Significance
CerebellumHigh expressionHighest tissue specificity Role in motor coordination
HippocampusModerate, primarily in interneuronsCell-type specific distribution Contribution to network excitability
Inferior/Superior ColliculiModerate expressionPart of seizure network Auditory processing and seizure propagation
Prefrontal CortexVariable expressionMay require longer antibody incubationCognitive function modulation

Studies have demonstrated differential GRIK1/GluK1 expression across brain regions, with particularly high specificity in the cerebellum . When interpreting these variations, researchers should consider:

To differentiate true biological variation from methodological artifacts, researchers should systematically compare multiple detection methods (e.g., immunohistochemistry, in situ hybridization, and Western blotting) within the same study. The approach taken in the GASH/Sal seizure model research provides a good example, where both Grik1 gene expression and GluK1 protein levels were assessed across multiple brain regions .

How can researchers troubleshoot and resolve discrepancies between Western blot and immunofluorescence results when using GRIK1 antibodies?

Discrepancies between Western blot (WB) and immunofluorescence (IF) results are common challenges when working with GRIK1 antibodies and may arise from several factors:

Common Discrepancies and Solutions:

  • Strong WB Signal but Weak IF Signal:

    • Possible Cause: Epitope masking in native conformation

    • Solution: Try different fixation methods (paraformaldehyde vs. methanol) or optimize antigen retrieval (citrate buffer pH 6.0 for 20 minutes)

    • Validation Approach: Compare multiple antibodies targeting different epitopes

  • Strong IF Signal but Weak WB Signal:

    • Possible Cause: Denaturation-sensitive epitope

    • Solution: Modify protein extraction method (non-denaturing conditions) or try native PAGE

    • Validation Approach: Verify IF specificity using GRIK1 knockout or knockdown controls

  • Different Molecular Weight in WB than Expected (104 kDa):

    • Possible Cause: Alternative splicing, post-translational modifications, or proteolytic processing

    • Solution: Use different extraction buffers with protease inhibitors; compare reducing vs. non-reducing conditions

    • Validation Approach: Literature review of known GRIK1 isoforms and their molecular weights

  • Different Regional or Cellular Distribution Patterns:

    • Possible Cause: Differential subcellular localization affecting extraction efficiency

    • Solution: Compare detergent-soluble vs. insoluble fractions; use subcellular fractionation

    • Validation Approach: Correlate with mRNA expression data from in situ hybridization

For optimal troubleshooting, researchers should consider that GRIK1 undergoes RNA editing within the second transmembrane domain , which may affect antibody recognition in a conformation-dependent manner. Additionally, different extraction methods may preferentially isolate specific protein pools (surface vs. intracellular, synaptic vs. extrasynaptic).

Verification with multiple antibodies targeting different epitopes is particularly important. For example, comparing results from antibodies targeting the N-terminal (AA 10-59), central region (AA 271-450), and C-terminal domain (AA 675-834) can help identify region-specific detection issues .

How can FITC-conjugated GRIK1 antibodies be applied in neurological disease research models?

FITC-conjugated GRIK1 antibodies offer valuable tools for investigating kainate receptor involvement in neurological disorders:

  • Epilepsy Models:

    • Quantify changes in GRIK1 expression and distribution in seizure networks

    • The GASH/Sal hamster model demonstrates how GRIK1/GluK1 expression differs across brain regions involved in seizure propagation

    • FITC conjugation allows direct visualization of potential receptor redistribution during epileptogenesis

  • Neurodegenerative Diseases:

    • Track GRIK1 expression changes in Alzheimer's and Parkinson's disease models

    • FITC-labeled antibodies can reveal co-localization with disease-specific markers (e.g., amyloid plaques, tau tangles)

    • Flow cytometry with FITC-conjugated antibodies can quantify receptor levels in isolated neurons from disease models

  • Psychiatric Disorders:

    • Examine GRIK1 distribution in models of schizophrenia, anxiety, and depression

    • Excessive glutamate receptor activation has been associated with psychiatric disorders

  • Brain Tumors:

    • Analyze GRIK1 expression in gliomas and other brain tumors

    • IHC studies have successfully detected GRIK1 in human glioma tissues using specific antibodies

    • FITC conjugation enables multi-label studies to correlate GRIK1 with tumor markers

For these applications, the direct fluorescence of FITC-conjugated antibodies offers advantages in multi-labeling studies where minimizing cross-reactivity between multiple antibodies is critical. When studying disease models, it's essential to include appropriate controls (age-matched, gender-matched) and validate findings across multiple techniques (e.g., combining IF with Western blotting and qPCR for GRIK1 mRNA).

Recent studies have successfully used anti-GRIK1 antibodies for IHC analysis in human glioma and lung cancer tissues, demonstrating their utility in cancer research . The detailed protocols provided in these studies can be adapted for FITC-conjugated antibodies with appropriate filter sets for fluorescence detection.

What are the most reliable quantification methods for GRIK1 expression changes in disease models when using fluorescent antibodies?

Reliable quantification of GRIK1 expression changes using FITC-conjugated antibodies requires rigorous methodologies:

Tissue Section Quantification Methods:

  • Mean Fluorescence Intensity (MFI) Analysis:

    • Define regions of interest (ROIs) corresponding to specific brain structures

    • Measure average pixel intensity within ROIs

    • Control for background using adjacent non-specific areas

    • Compare disease models with controls using appropriate statistical tests

  • Puncta Analysis for Synaptic Localization:

    • Identify GRIK1-positive puncta using automated thresholding algorithms

    • Quantify puncta density (number per unit area) and size

    • Co-localization with synaptic markers (e.g., PSD-95, synaptophysin) can distinguish synaptic vs. extrasynaptic receptors

  • Cell-Type Specific Quantification:

    • Perform multi-label immunofluorescence with cell-type markers (e.g., NeuN for neurons, GFAP for astrocytes)

    • Quantify GRIK1 expression separately within each cell population

    • Particularly important given GRIK1's preferential expression in GABAergic interneurons

Flow Cytometry Approaches:

  • Single-Cell Suspension Preparation:

    • Dissociate brain tissue into single cells using enzymatic digestion

    • Perform surface and intracellular staining with FITC-conjugated GRIK1 antibodies

    • Quantify receptor expression on a per-cell basis

  • Multi-Parameter Analysis:

    • Combine FITC-conjugated GRIK1 antibodies with markers for cell type, activation state, or other glutamate receptor subunits

    • Allows identification of cell populations with altered receptor expression

Western Blot Quantification:

  • Subcellular Fractionation:

    • Separate membrane and cytosolic fractions to distinguish surface vs. intracellular receptor pools

    • Compare expression ratios between fractions in disease vs. control samples

  • Normalization Strategies:

    • Normalize GRIK1 signal to loading controls (β-actin, GAPDH)

    • For membrane proteins, normalization to Na+/K+-ATPase may be more appropriate

When comparing results across techniques, researchers should be aware that each method measures different aspects of GRIK1 expression. For example, Western blotting quantifies total protein levels, while immunofluorescence provides spatial information but may be influenced by antibody accessibility in different cellular compartments.

How can researchers design co-localization studies to investigate GRIK1 interactions with other synaptic proteins using FITC-conjugated antibodies?

Co-localization studies to investigate GRIK1 interactions with other synaptic proteins require careful experimental design:

Experimental Design Considerations:

  • Fluorophore Selection:

    • Pair FITC-conjugated GRIK1 antibodies (emission peak ~520 nm) with spectrally distinct fluorophores:

      • Cy3 (emission ~570 nm) for moderate spectral separation

      • Cy5 or Alexa 647 (emission > 650 nm) for maximal spectral separation

    • Avoid fluorophores with significant overlap with FITC (e.g., YFP, Oregon Green)

  • Sequential Staining Protocol:

    • For antibodies from the same host species (e.g., multiple rabbit antibodies):

      1. Apply first primary antibody (e.g., FITC-conjugated GRIK1)

      2. Block with excess unlabeled anti-rabbit Fab fragments

      3. Apply second primary antibody with different conjugate

  • Synapse-Specific Markers:

    • Presynaptic markers: Synaptophysin, Bassoon, vGlut1 (glutamatergic), vGAT (GABAergic)

    • Postsynaptic markers: PSD-95, Homer1, Gephyrin

    • Combine with GRIK1 to determine synaptic vs. extrasynaptic localization

Quantitative Co-localization Analysis:

  • Pixel-Based Methods:

    • Pearson's correlation coefficient: Measures linear correlation between fluorescence intensities

    • Manders' overlap coefficient: Quantifies proportion of overlapping pixels

    • Thresholded overlap analysis: Focuses on pixels above background threshold

  • Object-Based Methods:

    • Identify discrete puncta in each channel

    • Measure center-to-center distances between nearest neighbors

    • Define co-localization based on distance threshold (typically <200 nm for confocal, <50 nm for super-resolution)

  • Statistical Validation:

    • Random shuffling of images to establish baseline co-localization by chance

    • Costes method for automated threshold selection and significance testing

Advanced Imaging Approaches:

  • Super-Resolution Microscopy:

    • STED, STORM, or PALM for nanoscale resolution (~20-50 nm)

    • Critical for distinguishing true molecular interactions from proximity

    • Note: FITC may not be optimal for all super-resolution techniques; consider antibodies with alternative fluorophores for these applications

  • Proximity Ligation Assay (PLA):

    • Detects proteins within 40 nm of each other

    • Combines antibody binding with rolling circle amplification

    • Provides higher specificity than conventional co-localization

For GRIK1, co-localization studies are particularly valuable for investigating its association with other kainate receptor subunits (GluK2, KA2) with which it forms functional heteromeric channels , as well as its relationship to scaffolding proteins that regulate receptor trafficking and synaptic anchoring.

What are the optimal fixation and permeabilization protocols for GRIK1 detection in different sample types?

Optimizing fixation and permeabilization is critical for successful GRIK1 detection across diverse sample types:

For Cultured Neurons/Cell Lines:

Fixation MethodAdvantagesLimitationsBest For
4% PFA, 10 min, RTPreserves morphologyMay mask some epitopesGeneral GRIK1 detection
Cold methanol, 10 min, -20°CBetter for some intracellular epitopesCan distort membrane proteinsC-terminal domain detection
2% PFA + 0.1% glutaraldehydeSuperior ultrastructure preservationStronger autofluorescenceEM correlative studies

Permeabilization Protocols:

  • For Membrane Proteins (Including GRIK1 Extracellular Domains):

    • Mild detergent: 0.1% Triton X-100 for 5-10 minutes

    • Alternative: 0.1% saponin (reversible, preserves membrane integrity)

  • For Intracellular Domains (C-terminal GRIK1 Epitopes):

    • Stronger permeabilization: 0.3% Triton X-100 for 10-15 minutes

    • Alternative: 0.1% SDS for 5 minutes for strongly cross-linked samples

For Tissue Sections:

  • Fresh-Frozen Sections:

    • Fix post-sectioning with 4% PFA for 10-15 minutes

    • Brief permeabilization (0.1% Triton X-100, 5-10 minutes)

    • Best for preserving sensitive epitopes

  • Perfusion-Fixed Tissue:

    • Perfuse with 4% PFA in PBS

    • Post-fix for 12-24 hours (shorter for smaller samples)

    • Section at 30-40 μm thickness

    • Permeabilize with 0.3% Triton X-100 in PBS for 30 minutes

  • Paraffin-Embedded Sections:

    • Require heat-mediated antigen retrieval in citrate buffer (pH 6.0) for 20 minutes

    • Block with 10% goat serum before antibody application

    • Critical for detecting GRIK1 in clinical samples

The epitope targeted by the antibody significantly influences the optimal protocol. For the FITC-conjugated antibody targeting AA 675-834 described in search result 1, which recognizes a C-terminal intracellular domain, more robust permeabilization may be necessary compared to antibodies targeting extracellular domains .

For co-labeling studies, it's important to verify that the chosen fixation and permeabilization protocol is compatible with all target proteins, as some may require specialized conditions for optimal detection.

How can researchers optimize signal-to-noise ratio when using FITC-conjugated GRIK1 antibodies in brain tissue with high autofluorescence?

Brain tissue presents particular challenges for fluorescence microscopy due to lipofuscin and other autofluorescent components. Several strategies can optimize signal-to-noise ratio when using FITC-conjugated antibodies:

Pre-Treatment Approaches:

  • Autofluorescence Quenching:

    • Sudan Black B (0.1-0.3% in 70% ethanol) for 5-10 minutes after immunostaining

    • Copper sulfate (1-5 mM CuSO₄ in 50 mM ammonium acetate) treatment

    • TrueBlack® Lipofuscin Autofluorescence Quencher (follow manufacturer's protocol)

  • Photobleaching Before Imaging:

    • Expose tissue sections to strong illumination in the autofluorescence wavelength range

    • Autofluorescence typically bleaches faster than specific FITC signal

Antibody Optimization:

  • Titration Experiments:

    • Test dilution series (0.5-10 μg/ml) of FITC-conjugated antibody

    • Identify concentration that maximizes specific signal while minimizing background

  • Blocking Enhancement:

    • Extended blocking (2-3 hours) with 10% normal serum

    • Addition of 0.1-0.3% Triton X-100 and 0.05% Tween-20 to blocking buffer

    • 5% BSA can reduce non-specific binding

Imaging Strategies:

  • Spectral Unmixing:

    • Acquire autofluorescence spectrum from unstained tissue

    • Computationally separate autofluorescence from specific FITC signal

    • Particularly effective on confocal systems with spectral detectors

  • Time-Gated Detection:

    • Utilize the longer fluorescence lifetime of FITC compared to autofluorescence

    • Requires specialized time-resolved microscopy equipment

  • Optimal Filter Selection:

    • Use narrow bandpass filters centered on FITC emission peak (~520 nm)

    • Higher quality filters with improved optical density outside the passband

Image Processing Approaches:

  • Background Subtraction:

    • Acquire images from adjacent unlabeled sections

    • Subtract background pattern from experimental images

  • Thresholding and Segmentation:

    • Apply algorithms to distinguish specific signal based on intensity and morphology

    • Machine learning-based approaches can be trained to recognize true signal

Researchers should note that when studying structures with high intrinsic autofluorescence, such as aged brain tissue or regions with high lipofuscin content, switching to antibodies with red or far-red fluorophores may be preferable to FITC conjugates, as autofluorescence is typically lower in these spectral ranges.

What are the critical considerations for long-term storage and handling of FITC-conjugated antibodies to maintain optimal performance?

Proper storage and handling of FITC-conjugated GRIK1 antibodies are essential for maintaining sensitivity and specificity over time:

Storage Conditions:

  • Temperature:

    • Store at -20°C for long-term storage (months to years)

    • Avoid repeated freeze-thaw cycles (aliquot upon receipt)

    • Working stocks can be kept at 4°C for 1-2 weeks

  • Light Protection:

    • FITC is particularly susceptible to photobleaching

    • Store in amber vials or wrap containers in aluminum foil

    • Minimize exposure to light during handling

  • Buffer Composition:

    • Optimal storage buffer typically contains:

      • PBS pH 7.4

      • 0.02% sodium azide as preservative

      • 1% BSA or other carrier protein for stability

    • Glycerol (50%) can be added for freeze protection

Handling Recommendations:

  • Thawing Protocol:

    • Thaw frozen aliquots completely at room temperature

    • Gentle mixing (avoid vortexing) to ensure homogeneity

    • Brief centrifugation to collect liquid at the bottom of the tube

  • Dilution Practices:

    • Prepare working dilutions immediately before use

    • Use high-quality, filtered buffers

    • Include carrier protein (0.5-1% BSA) in dilution buffer

  • Contamination Prevention:

    • Use sterile technique when handling antibody stocks

    • Filter buffers through 0.22 μm filters before use

    • Avoid bacterial contamination which can degrade antibodies

Stability Monitoring:

  • Performance Testing:

    • Periodically test antibody performance on positive control samples

    • Compare signal intensity and background with previous results

    • Consider including standardized positive controls in each experiment

  • Physical Indicators of Deterioration:

    • Visual inspection for precipitates or color changes

    • Increased turbidity may indicate protein aggregation

    • Significant color change can signal FITC degradation

  • Functionality Assessment:

    • Flow cytometry analysis of a standard sample can quantitatively track sensitivity loss

    • Western blot with titration series can identify sensitivity changes

For the FITC-conjugated GRIK1 antibody described in search result 1, which is purified to >95% by Protein G purification , proper storage is particularly important to maintain this high purity and prevent degradation or aggregation that could increase non-specific binding.

When planning long-term studies, researchers should consider preparing multiple small aliquots (10-20 μl) of antibody upon receipt to minimize freeze-thaw cycles and maintain consistent performance throughout the project duration.

What future research directions could be facilitated by advanced applications of FITC-conjugated GRIK1 antibodies?

FITC-conjugated GRIK1 antibodies are poised to enable several promising research directions:

  • Single-Molecule Trafficking Studies:

    • Combining FITC-conjugated antibodies with quantum dots or photoactivatable fluorophores could enable long-term tracking of individual GRIK1-containing receptors

    • This approach would provide unprecedented insights into receptor mobility, clustering, and activity-dependent redistribution

  • Circuit-Specific Analysis in Neurological Disorders:

    • Integration with tissue clearing techniques (CLARITY, iDISCO) would allow whole-brain mapping of GRIK1 distribution

    • This could reveal circuit-specific alterations in receptor expression in epilepsy models like GASH/Sal

  • Pharmacological Modulation Visualization:

    • Real-time imaging of receptor redistribution in response to therapeutic compounds

    • Could facilitate development of drugs targeting kainate receptor trafficking rather than just function

  • Correlation of Structure and Function:

    • Combined electrophysiology and high-resolution imaging to link GRIK1 localization with functional properties

    • Patch-clamp fluorometry approaches could simultaneously measure receptor currents and visualize conformational changes

  • Heteromer-Specific Targeting:

    • Development of approaches to selectively label specific GRIK1-containing receptor subtypes

    • Would help distinguish between different kainate receptor assemblies (GRIK1/GRIK2, GRIK1/KA2)

  • Translation to Clinical Diagnostics:

    • Adaptation of FITC-GRIK1 antibody protocols for patient-derived samples

    • Could serve as biomarkers for certain neurological or psychiatric conditions

These advanced applications build upon the technical foundations established in current research while pushing toward more integrative, functional, and clinically relevant approaches. As neuroscience increasingly focuses on understanding dynamic cellular processes in intact circuits, the ability to specifically visualize GRIK1 distribution and trafficking will become increasingly valuable for both basic and translational research.

Quick Inquiry

Personal Email Detected
Please use an institutional or corporate email address for inquiries. Personal email accounts ( such as Gmail, Yahoo, and Outlook) are not accepted. *
© Copyright 2025 TheBiotek. All Rights Reserved.