HLTF Antibody, FITC conjugated

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Description

HLTF Antibody, FITC Conjugated: Overview

HLTF is a helicase-like transcription factor implicated in DNA repair and carcinogenesis . The FITC-conjugated antibody combines a primary antibody targeting HLTF with fluorescein isothiocyanate (FITC), a green-fluorescing dye (Amax=492nm; Emax=520nm) . This conjugation enables visualization of HLTF via fluorescence microscopy or flow cytometry.

Key Features:

  • Target: HLTF protein (helicase-like transcription factor).

  • Applications: Immunofluorescence (IF), flow cytometry (FC), and Western blot (WB) .

  • Reactivity: Human, mouse, rat .

Applications

The antibody is used in:

  1. Cancer Research: Detecting early tumor markers, as HLTF expression correlates with carcinogenesis in kidney tumor models .

  2. DNA Repair Studies: Monitoring HLTF’s role in helicase-mediated DNA repair pathways .

  3. Imaging: Tracking subcellular localization of HLTF in live or fixed cells .

Table 1: Recommended Dilutions for HLTF Antibody, FITC Conjugated

ApplicationDilution Range
Immunofluorescence (IF)1:50–1:500
Flow Cytometry (FC)1:20–1:100
Western Blot (WB)1:1000–1:5000

Research Findings

  • Labeling Efficiency: Higher FITC-labeling indices in antibodies correlate with reduced binding affinity for target antigens, potentially leading to non-specific staining .

  • Kidney Tumor Model: HLTF expression was detected in early-stage tumor buds using immunohistochemistry, suggesting its role as an early cancer marker .

  • Subcellular Localization: Co-staining with FITC-conjugated antibodies revealed HLTF localization in nuclear and cytoplasmic compartments during DNA damage responses .

Table 2: HLTF Expression in Kidney Tumor Models

Tumor StageHLTF-Positive Cells (%)
Early Tumor Buds100%
Advanced Tumors10%

Considerations for Use

  • Optimization: Titrate antibody dilutions for each experimental system to minimize background noise .

  • Cross-Reactivity: Verify specificity for target species (human, mouse, rat) .

  • Stability: Avoid repeated freeze-thaw cycles; store at -20°C .

References

  1. TdB Labs: FITC Labeling and Conjugation .

  2. PubMed: Effect of FITC-labeling on antibody binding affinity .

  3. Proteintech: HLTF Antibody (14286-1-AP) .

  4. PMC: HLTF expression in kidney tumors .

  5. Proteintech: FITC-conjugated Goat Anti-Human IgG .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship your order within 1-3 business days of receipt. Delivery times may vary depending on the shipping method and location. For specific delivery estimates, please contact your local distributor.
Synonyms
DNA-binding protein/plasminogen activator inhibitor 1 regulator antibody; Helicase like transcription factor antibody; Helicase-like transcription factor antibody; HIP116 antibody; HIP116A antibody; HLTF 1 antibody; Hltf antibody; HLTF_HUMAN antibody; HLTF1 antibody; p113 antibody; RING finger protein 80 antibody; RNF80 antibody; SMARC A3 antibody; SMARCA 3 antibody; SMARCA3 antibody; SNF2-like 3 antibody; SNF2L3 antibody; Sucrose nonfermenting protein 2 like 3 antibody; Sucrose nonfermenting protein 2-like 3 antibody; SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 3 antibody; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a3 antibody; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3 antibody; ZBU 1 antibody; ZBU1 antibody
Target Names
HLTF
Uniprot No.

Target Background

Function
HLTF (Helicase-Like Transcription Factor) exhibits both helicase and E3 ubiquitin ligase activities. It possesses inherent ATP-dependent nucleosome-remodeling activity, which is crucial for the transcriptional activation or repression of specific target promoters. These promoters include the SERPINE1 and HIV-1 promoters, as well as the SV40 enhancer, to which HLTF can bind directly. HLTF plays a vital role in error-free postreplication repair (PRR) of damaged DNA, safeguarding genomic stability through its function as a ubiquitin ligase for 'Lys-63'-linked polyubiquitination of chromatin-bound PCNA.
Gene References Into Functions
  1. Research indicates that HIV-1 vpr (vpr gene product of Human immunodeficiency virus 1) facilitates the polyubiquitination of HLTF by directly associating it with the C-terminal WD40 domain of DCAF1 (human Vpr (HIV-1) binding protein) in complex with CRL4 (human E3 ubiquitin ligase CRL4). PMID: 29079575
  2. A low expression of wild-type HLTF coupled with a high expression of I21R HLTF variant is correlated with poor disease-free survival. PMID: 29661164
  3. Current studies do not provide compelling evidence suggesting that PAI-1 gene variants contribute to the risk of diabetic retinopathy or its development during the course of Type 2 Diabetes Mellitus. PMID: 28632032
  4. A significant number of SNF2 family proteins, DNA and ATP-dependent motor proteins, are indispensable during transcription, DNA replication, and DNA repair processes to manipulate protein-DNA interactions and modify DNA structure. SMARCAL1, ZRANB3, and HLTF are three closely related members of this family with specialized functions that ensure genome stability during DNA replication. [review] PMID: 28954549
  5. Depletion of SMARCAL1, a SNF2-family DNA translocase that remodels stalled replication forks, restores replication fork stability and reduces the formation of replication stress-induced DNA breaks and chromosomal aberrations in BRCA1/2-deficient cells. Alongside SMARCAL1, other SNF2-family fork remodelers, including ZRANB3 and HLTF, can induce nascent DNA degradation and genomic instability. PMID: 29053959
  6. HIV-1 vpr reprograms CRL4(DCAF1) E3 to target HLTF for proteasome-dependent degradation, independent of previously documented Vpr interactions with base excision repair enzyme uracil DNA glycosylase (UNG2) and crossover junction endonuclease MUS81, which Vpr also directs for degradation via CRL4(DCAF1) E3. PMID: 27335459
  7. Fasudil, a drug, reduces LPS-mediated TF (transcription factor) and PAI-1 expression and activity in peripheral blood mononuclear cells (PBMCs). These effects may partially contribute to the clinical benefits of fasudil in managing continuous ambulatory peritoneal dialysis (CAPD) patients. PMID: 27756191
  8. HLTF is degraded in lymphocytes and macrophages infected with Vpr-expressing HIV-1. This finding reveals a previously unknown mechanism by which HIV-1 counteracts DNA repair in host cells. PMID: 27114546
  9. HLTF expression is altered in various cancers through two primary mechanisms: gene silencing via promoter hypermethylation or alternative mRNA splicing, resulting in the production of truncated proteins lacking DNA repair domains. [review] PMID: 26472339
  10. HLTF facilitates the filling-in of gaps opposite damaged DNA during replication, and this postreplication repair function depends on its HIRAN domain. PMID: 26350214
  11. Findings suggest a mechanism of helicase-like transcription factor HLTF-mediated fork reversal, highlighting the requirement for distinct fork remodeling activities within the cell. PMID: 26051180
  12. These results indicate that the HIRAN domain functions as a sensor for the 3'-end of the primer strand at the stalled replication fork, and this domain facilitates fork regression. PMID: 25858588
  13. A study demonstrates a correlation between HLTF expression level and thyroid neoplastic progression, where three truncated forms are detected in thyroid carcinoma. PMID: 25005870
  14. Research provides evidence that methylation of HLTF, particularly HPP1 detected in serum, is strongly correlated with cell death in colorectal cancer (CRC) using lactate dehydrogenase (LDH) as a surrogate marker. PMID: 24708595
  15. Results demonstrate that the loss of HLTF function promotes the malignant transformation of intestinal or colonic adenomas to carcinomas by inducing genomic instability. PMID: 22452792
  16. Findings outline a previously unknown USP7-HLTF-PCNA molecular network that governs DNA damage response. PMID: 21845734
  17. HLTF can displace a broad spectrum of proteins, including replication protein A (RPA), PCNA, and replication factor C (RFC), providing the first example of a protein clearing activity at the stalled replication fork. PMID: 21795603
  18. HLTF and SHPRH suppress mutagenesis in a damage-specific manner, preventing mutations induced by UV rays and methyl methanesulfonate. PMID: 21396873
  19. Results suggest that HLTF is involved in DNA repair and apoptosis in cancer cells, which may represent a target for gene therapies in human cancer. PMID: 20535496
  20. This is the first study to identify the regulatory mechanism of HLTF by CHFR, suggesting that CHFR-mediated downregulation of HLTF may contribute to cancer prevention. PMID: 20388495
  21. HLTF can facilitate error-free replication of damaged DNA, supporting its role in preventing mutagenesis and carcinogenesis, thereby suggesting its potential as a tumor suppressor. PMID: 19948885
  22. These findings indicate that HLTF promoter hypermethylation is frequently observed in human gastric cancer, and inactivation of HLTF or the chromatin-remodeling complex may play a critical role in gastric carcinogenesis. PMID: 12766908
  23. Acetylation of histones H3 and H4 in the 5' CpG island of the HLTF gene was inversely associated with DNA methylation status. PMID: 12901794
  24. Methylation helicase-like transcription factor is associated with advanced esophageal squamous cell carcinoma. PMID: 17094449
  25. HLTF activation was recently linked to the initial steps of carcinogenesis in an experimental model of estrogen-induced kidney tumor. [REVIEW] PMID: 18034322
  26. HLTF physically interacts with the Rad6-Rad18 and Mms2-Ubc13 ubiquitin-conjugating enzyme complexes and promotes the Lys-63-linked polyubiquitination of proliferating cell nuclear antigen at its Lys-164 residue. PMID: 18316726
  27. Splice arrays and RT-PCR revealed that while most splice variants in RUSH and ATP11B are conserved in humans and rabbits, the RFBP isoform is specific to rabbits. PMID: 18584949
  28. HLTF and SHPRH are functional homologues of yeast Rad5, cooperatively mediating PCNA polyubiquitination and maintaining genomic stability. PMID: 18719106
  29. There is an association between the presence of helicase-like transcription factor and neoplastic progression of hypopharyngeal and laryngeal squamous cell carcinomas. PMID: 18825407
  30. Hypopharyngeal squamous cell carcinomas exhibiting high levels of HLTF have a worse prognosis. PMID: 19614770
  31. The biochemical characterization of cellular HLTF is described. PMID: 19723507
  32. HLTF/SMARCA3, a member of the SWI/SNF family, is a common target for methylation and epigenetic gene silencing in colon cancer, making it a potential colon cancer suppressor gene. PMID: 11904375
  33. SMARCA3 is the human gene for RUSH transcription factors (U66564, U66565; Mol Endocrinol, 1996, 10:1335-1349). A binding partner has been cloned and characterized (AF236061; JBC, 2001, 276:3641-3649). PMID: 11058586

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Database Links

HGNC: 11099

OMIM: 603257

KEGG: hsa:6596

STRING: 9606.ENSP00000308944

UniGene: Hs.3068

Protein Families
SNF2/RAD54 helicase family, RAD16 subfamily
Subcellular Location
Cytoplasm. Nucleus. Nucleus, nucleolus. Nucleus, nucleoplasm.
Tissue Specificity
Expressed in brain, heart, kidney, liver, lung, pancreas, placenta and skeletal muscle.

Q&A

What is HLTF and why is it significant in molecular biology research?

HLTF (Helicase-Like Transcription Factor) is a multifunctional nuclear protein that plays critical roles in transcriptional regulation, DNA damage response, and genome stability maintenance. It belongs to the SWI/SNF family of proteins with both DNA helicase and E3 ubiquitin ligase activities. HLTF has gained significant research interest because its expression is altered in various cancers, making it an important molecule in cancer biology investigations. Studies have demonstrated that HLTF expression is linked to initial steps of carcinogenesis in certain cancer models, such as kidney tumors in Syrian golden hamsters, where strong HLTF labeling is detected in early tumor buds, establishing it as an early cancer marker in this model . The multifaceted functions of HLTF in DNA repair, replication fork rescue, and chromatin remodeling make it an attractive target for molecular research across multiple disciplines.

What are the key characteristics of FITC-conjugated antibodies for research applications?

FITC (Fluorescein isothiocyanate) is a commonly used fluorescent dye that emits green fluorescence when excited with blue light (typically at 488 nm). FITC-conjugated antibodies offer several advantages in research applications:

  • Direct visualization capabilities without the need for secondary antibody incubation steps

  • Compatibility with standard fluorescence microscopy and flow cytometry equipment

  • Well-established excitation/emission spectra that minimize overlap with other common fluorophores

  • Stability under standard laboratory storage conditions when properly maintained

FITC-conjugated antibodies like the HLTF antibody (AA 332-476) are particularly useful for applications such as immunofluorescence microscopy, flow cytometry, and fluorescence-based immunoassays. The conjugation enables direct detection of HLTF protein without requiring secondary antibody steps, streamlining experimental workflows . When using FITC-conjugated antibodies, researchers should be mindful of photobleaching effects and ensure proper storage conditions to maintain signal intensity.

What applications is the FITC-conjugated HLTF antibody suitable for?

The FITC-conjugated HLTF antibody is suitable for multiple research applications, with specific protocols established for each method:

  • Immunofluorescence (IF)/Immunocytochemistry (ICC): Used to visualize HLTF protein localization within cellular compartments. Typical dilutions range from 1:50 to 1:500, with positive detection confirmed in cell lines such as HeLa .

  • Flow Cytometry: Enables quantification of HLTF expression in cell populations and can be used for cell sorting based on HLTF expression levels.

  • Dual-labeling experiments: The FITC-conjugated HLTF antibody can be combined with antibodies conjugated to different fluorophores for co-localization studies. For example, simultaneous demonstration of structural proteins like vimentin and HLTF has been performed using a mixture of mouse monoclonal anti-vimentin antibodies and rabbit polyclonal anti-HLTF antibodies .

  • Western Blot: While unconjugated HLTF antibodies are typically used for Western blot applications (dilution 1:500-1:1000), the FITC-conjugated version can be utilized in specialized fluorescence-based Western blot systems .

When designing experiments with FITC-conjugated HLTF antibody, researchers should optimize antibody concentrations and include appropriate controls to ensure specific binding and minimal background fluorescence.

How should researchers optimize protocols for FITC-conjugated HLTF antibody use in immunofluorescence?

Optimizing protocols for FITC-conjugated HLTF antibody in immunofluorescence requires systematic adjustment of several parameters:

  • Fixation method selection: For HLTF detection, 4% paraformaldehyde in phosphate buffered saline (DPBS) at 4°C is commonly used, as demonstrated in previous studies. The fixation time (typically 15 minutes) should be carefully controlled to preserve epitope accessibility while maintaining cellular structure .

  • Blocking optimization: Using 5% normal goat serum in PBS (NGS-PBS) for 20 minutes at room temperature before primary antibody incubation helps minimize non-specific binding .

  • Antibody titration: Begin with manufacturer-recommended dilutions (typically 1:50 to 1:500 for IF/ICC) and perform serial dilutions to identify the optimal concentration that provides the best signal-to-noise ratio .

  • Incubation conditions: Test different incubation times and temperatures (e.g., 1 hour at room temperature versus overnight at 4°C) to determine which conditions yield optimal staining.

  • Counterstaining considerations: When performing dual labeling, select complementary fluorophores that have minimal spectral overlap with FITC to avoid bleed-through artifacts. For example, Texas Red-conjugated reagents have been successfully paired with FITC-labeled antibodies .

  • Mounting media selection: Use anti-fade mounting media to minimize photobleaching of the FITC signal during microscopy and storage.

Researchers should document each optimization step systematically and include appropriate controls (isotype, secondary-only, and unstained) to ensure the specificity of observed signals.

What controls are essential when working with FITC-conjugated HLTF antibody?

When working with FITC-conjugated HLTF antibody, several controls are essential to ensure experimental validity:

  • Isotype control: An isotype-matched control antibody conjugated to FITC should be used at the same concentration as the HLTF antibody to assess non-specific binding due to antibody class characteristics .

  • Negative tissue/cell controls: Cell lines or tissues known not to express HLTF should be included to confirm antibody specificity.

  • Positive tissue/cell controls: Cells with confirmed HLTF expression, such as HeLa or K-562 cells, should be included to validate antibody functionality .

  • Peptide competition assay: Pre-incubation of the HLTF antibody with its immunogenic peptide (corresponding to AA 332-476) should abolish specific staining if the antibody is truly specific.

  • Fluorescence minus one (FMO) controls: In multicolor flow cytometry, FMO controls help determine proper gating by excluding the FITC-conjugated HLTF antibody from the staining panel.

  • Fixed versus live cell comparisons: When applicable, comparing staining patterns in fixed versus live cells can provide insights into potential fixation artifacts.

Systematic inclusion of these controls enables confident interpretation of experimental results and helps troubleshoot any unexpected staining patterns or background issues.

How can researchers validate the specificity of FITC-conjugated HLTF antibody in their experimental system?

Validating antibody specificity is crucial for generating reliable research findings. For FITC-conjugated HLTF antibody, researchers should employ multiple complementary approaches:

  • Genetic validation: Use HLTF knockout or knockdown models (via CRISPR-Cas9 or siRNA) to confirm that the antibody signal is lost or significantly reduced when the target protein is not expressed .

  • Western blot correlation: Perform Western blot analysis using unconjugated HLTF antibody on the same samples used for immunofluorescence to verify that the observed molecular weight matches the predicted size of HLTF (approximately 114 kDa) .

  • Immunoprecipitation validation: Conduct immunoprecipitation experiments with HLTF antibody followed by mass spectrometry analysis to confirm that the precipitated protein is indeed HLTF .

  • Epitope mapping: If discrepancies arise, consider using alternative HLTF antibodies targeting different epitopes (e.g., N-terminal vs. C-terminal) to confirm staining patterns. Inconsistencies may suggest isoform-specific detection or potential cross-reactivity .

  • Multiple detection methods: Compare results across different detection platforms (e.g., flow cytometry, immunofluorescence, and immunohistochemistry) to ensure consistency in HLTF detection.

  • Literature cross-validation: Compare experimental findings with published results to identify any discrepancies that might indicate specificity issues.

By systematically implementing these validation approaches, researchers can establish high confidence in the specificity of their FITC-conjugated HLTF antibody and produce more reliable experimental data.

How can FITC-conjugated HLTF antibody be utilized in cancer research applications?

FITC-conjugated HLTF antibody offers valuable applications in cancer research based on HLTF's documented role in tumorigenesis:

  • Early cancer detection: Studies have shown that HLTF expression is an early marker in certain cancer models. For instance, in kidney tumors induced in Syrian golden hamsters, strong HLTF labeling was detected in small tumor buds, making it a potential early cancer biomarker. Flow cytometry with FITC-conjugated HLTF antibody can help quantify this expression in patient samples or experimental models .

  • Cancer progression monitoring: Research has demonstrated that HLTF expression patterns change during cancer progression. In the kidney tumor model, while 100% of cells in early tumor buds expressed HLTF, this decreased to approximately 10% in advanced tumors. FITC-conjugated HLTF antibody enables visualization and quantification of this dynamic expression pattern .

  • Dual-marker analysis: By combining FITC-conjugated HLTF antibody with antibodies against other cancer-relevant proteins (conjugated to different fluorophores), researchers can perform multiplexed analysis to characterize heterogeneous tumor cell populations. For example, simultaneous detection of HLTF and structural proteins like vimentin can provide insights into cancer cell phenotypes .

  • Xenograft model evaluation: HLTF expression patterns can be evaluated in xenograft models using immunofluorescence with FITC-conjugated HLTF antibody, allowing correlation between in vitro and in vivo findings. Previous research showed that only about 10% of cells remained HLTF-positive in xenografts produced by HKT-1097 cells in nude mice .

The specific relationship between HLTF expression and carcinogenesis makes FITC-conjugated HLTF antibody a valuable tool for investigating cancer initiation, progression, and heterogeneity.

What are the optimal protocols for dual immunofluorescence labeling with FITC-conjugated HLTF antibody?

For successful dual immunofluorescence labeling with FITC-conjugated HLTF antibody and other markers, researchers should follow this optimized protocol:

  • Sample preparation:

    • Fix cells in 4% paraformaldehyde in DPBS at 4°C for 15 minutes

    • Replace fixative with DPBS and store at 4°C until immunostaining

  • Blocking:

    • Incubate samples in 5% normal goat serum in PBS for 20 minutes at room temperature to reduce non-specific binding

  • Primary antibody incubation:

    • For co-localization with cytoskeletal proteins like vimentin: Prepare a mixture of mouse monoclonal anti-vimentin antibody and rabbit FITC-conjugated anti-HLTF antibody at optimized concentrations

    • Alternatively, for co-localization with nuclear proteins: Use a sequential approach where samples are first exposed to anti-HLTF antibodies followed by additional markers

  • Secondary antibody incubation (for non-conjugated primary antibodies):

    • When pairing with unconjugated primary antibodies, use secondary antibodies conjugated to fluorophores with minimal spectral overlap with FITC (e.g., Texas Red)

  • Mounting and visualization:

    • Mount samples in anti-fade medium containing DAPI for nuclear counterstaining

    • Image using appropriate filter sets for FITC (excitation ~490 nm, emission ~525 nm) and the paired fluorophore

For specific combinations that have been successfully demonstrated:

  • HLTF and vimentin: Use mouse anti-vimentin with FITC-conjugated anti-mouse secondary, followed by rabbit anti-HLTF with Texas Red-conjugated streptavidin

  • HLTF and lamin: Sequential exposure to anti-HLTF antibodies followed by FITC-conjugated detection

Careful selection of complementary fluorophores and optimization of antibody concentrations are critical for successful dual labeling experiments.

What troubleshooting approaches should be employed when experiencing weak or non-specific signals with FITC-conjugated HLTF antibody?

When encountering weak or non-specific signals with FITC-conjugated HLTF antibody, systematic troubleshooting is essential:

For weak signals:

  • Antibody concentration adjustment: Increase antibody concentration incrementally (e.g., from 1:500 to 1:100) while monitoring background levels .

  • Epitope retrieval optimization: Test different antigen retrieval methods if applicable (heat-induced or enzymatic) to improve epitope accessibility.

  • Signal amplification: Consider implementing a biotin-streptavidin amplification system, similar to the approach used for Texas Red detection in previous studies .

  • Fixation adjustment: Different fixation protocols may preserve the HLTF epitope better; compare paraformaldehyde, methanol, and acetone fixation.

  • Incubation time extension: Extend primary antibody incubation time (e.g., overnight at 4°C instead of 1 hour at room temperature).

For non-specific signals:

  • Blocking enhancement: Increase blocking serum concentration (e.g., from 5% to 10%) or try different blocking agents (BSA, casein, or commercial blocking solutions).

  • Washing optimization: Implement more stringent washing steps with increased duration or detergent concentration in wash buffers.

  • Isotype control comparison: Compare staining patterns with an isotype-matched control antibody at the same concentration to identify non-specific binding .

  • Secondary antibody controls: When using detection systems, include secondary-only controls to identify potential background from this source.

  • Autofluorescence reduction: Treat samples with autofluorescence reducers like Sudan Black B or commercially available quenching solutions if tissue autofluorescence is interfering with FITC signal detection.

Methodological documentation:
Document all troubleshooting steps systematically, recording images, settings, and protocols for each condition to identify the optimal approach for your specific experimental system.

How does FITC-conjugated HLTF antibody performance compare to other detection systems for HLTF?

When evaluating different detection systems for HLTF, several factors should be considered:

Detection SystemAdvantagesLimitationsApplications
FITC-conjugated anti-HLTF- Direct detection without secondary antibody
- Compatible with standard fluorescence filters
- Enables dual-labeling with red fluorophores
- Stable under standard storage conditions
- Potential photobleaching
- Limited signal amplification
- Autofluorescence interference in some tissues
Immunofluorescence, Flow cytometry
Unconjugated anti-HLTF with fluorescent secondary- Signal amplification through multiple secondary binding
- Flexibility to change detection fluorophore
- Lower cost for multiple targets using same host
- Additional incubation step required
- Potential for cross-reactivity
- Batch variability of secondary antibodies
Immunofluorescence, Western blot, IHC
HRP-conjugated anti-HLTF- Enzymatic amplification increases sensitivity
- Permanent signal (non-fading)
- Compatible with brightfield microscopy
- Limited multiplexing capabilities
- Potential for diffusion artifacts
- Requires substrate addition
Immunohistochemistry, Western blot, ELISA
Biotin-conjugated anti-HLTF- Versatile detection with streptavidin conjugates
- High signal amplification potential
- Compatible with various detection methods
- Endogenous biotin interference
- Multiple step protocol
- Potential for high background
Immunohistochemistry, Western blot, Complex detection systems

What considerations should be made when selecting between different epitope-specific HLTF antibodies?

When selecting between different epitope-specific HLTF antibodies, researchers should consider several critical factors:

  • Isoform specificity: HLTF has multiple isoforms, and antibodies targeting different epitopes may recognize distinct subsets of these isoforms. For comprehensive detection, researchers may need to use antibodies targeting conserved regions like AA 332-476 .

  • Functional domain targeting: HLTF contains multiple functional domains including DNA-binding domains, ATPase domains, and RING finger domains. Antibodies targeting specific domains may be preferred depending on research questions:

    • N-terminal antibodies: Useful for detecting DNA-binding activity

    • C-terminal antibodies: May be better for studying protein-protein interactions

    • Central region antibodies (AA 332-476): Often provide robust general detection

  • Post-translational modification interference: Consider whether the epitope region might be subject to post-translational modifications that could mask antibody binding. Available HLTF antibodies target various regions including:

    • AA 332-476 (central region)

    • AA 409-437 (central region)

    • AA 831-990 (C-terminal region)

    • N-terminal and C-terminal regions

  • Cross-species reactivity requirements: Different epitope-specific antibodies show varying cross-reactivity profiles. For comparative studies across species, select antibodies with appropriate cross-reactivity:

    • Antibodies to AA 332-476: Human-specific

    • Antibodies to C-terminal regions: Human, Rat, Dog, Rabbit, Monkey reactivity

    • Antibodies to N-terminal regions: Broader reactivity across Human, Mouse, Dog, Rabbit, Cow, Horse, Pig, Monkey, Bat

  • Application compatibility: Certain epitopes may be more accessible in specific applications. For example, some epitopes may be masked in fixed tissue but accessible in Western blotting. Available antibodies have been validated for specific applications:

    • AA 332-476 antibody: Validated for WB, ELISA, IHC, IP

    • AA 409-437 antibody: Validated for WB, FACS

    • C-terminal antibodies: Validated for WB, IHC, ICC

By carefully evaluating these factors in relation to specific research objectives, investigators can select the most appropriate epitope-specific HLTF antibody for their studies.

How can FITC-conjugated HLTF antibody be integrated into multiparameter flow cytometry panels?

Integrating FITC-conjugated HLTF antibody into multiparameter flow cytometry panels requires careful planning to maximize information yield while minimizing spectral overlap. The following methodological approach is recommended:

  • Panel design considerations:

    • FITC emits in the green spectrum (~525 nm), so pair with fluorophores that have minimal spectral overlap such as PE-Cy7, APC, and BV605

    • For a standard 4-color panel, combine FITC-HLTF with PE (red), APC (far red), and a violet dye like BV421

    • When designing panels, account for relative expression levels of targets (place HLTF-FITC in an appropriate channel based on expected expression intensity)

  • Sample preparation protocol:

    • Fix cells using 4% paraformaldehyde for 15 minutes at 4°C

    • For intracellular HLTF detection, include a permeabilization step using 0.1% Triton X-100 or commercial permeabilization reagents

    • Block with 5% normal goat serum to reduce non-specific binding

  • Staining sequence optimization:

    • For panels including both surface and intracellular markers:

      1. Stain for surface markers first

      2. Fix and permeabilize cells

      3. Stain for HLTF and other intracellular targets

  • Essential controls:

    • Single-color controls for compensation calculation

    • Fluorescence Minus One (FMO) controls to determine gating boundaries

    • Isotype control at the same concentration as the HLTF antibody to assess background

    • Biological controls (HLTF-high and HLTF-low cell types) to validate staining patterns

  • Data analysis approach:

    • Apply compensation based on single-color controls

    • Use FMO controls to set gates for HLTF-positive populations

    • Consider dimensionality reduction techniques (tSNE, UMAP) for visualizing HLTF expression patterns in relation to other markers

For cancer research applications specifically, researchers might construct a panel including:

  • FITC-HLTF

  • PE-conjugated proliferation marker (Ki-67)

  • APC-conjugated apoptosis marker

  • BV421-conjugated cell type-specific marker

This approach enables correlation of HLTF expression with proliferation status, apoptotic tendencies, and cell lineage information in heterogeneous samples like tumor biopsies.

What emerging research applications might benefit from FITC-conjugated HLTF antibody use?

Several cutting-edge research applications could benefit from incorporating FITC-conjugated HLTF antibody:

  • Single-cell analysis of tumor heterogeneity: Given that HLTF expression varies significantly within tumors (from 100% in early tumor buds to approximately 10% in advanced tumors), FITC-conjugated HLTF antibody could enable identification and isolation of distinct tumor cell subpopulations for single-cell sequencing or proteomics analysis . This would provide insights into how HLTF-expressing cells differ from HLTF-negative cells within the same tumor.

  • Live-cell imaging of DNA damage responses: Since HLTF plays a role in DNA damage repair, membrane-permeable FITC-conjugated HLTF antibody fragments could potentially be developed to track HLTF recruitment to DNA damage sites in real-time, providing new insights into repair kinetics and mechanisms.

  • Chromatin immunoprecipitation combined with sequencing (ChIP-seq): FITC-conjugated HLTF antibody could be adapted for ChIP-seq applications to map genome-wide binding sites of HLTF, elucidating its role in transcriptional regulation and DNA repair pathway choice.

  • Liquid biopsy development: Given HLTF's role as an early cancer marker in some models, FITC-conjugated HLTF antibody could be utilized in developing flow cytometry-based liquid biopsy approaches for detecting circulating tumor cells with altered HLTF expression .

  • Multiplexed tissue imaging: Integration of FITC-conjugated HLTF antibody into multiplexed imaging platforms (e.g., Imaging Mass Cytometry or CODEX) would enable spatial mapping of HLTF expression in relation to numerous other markers in the tissue microenvironment, providing insights into its contextual roles in different tissue states.

  • Therapeutic response monitoring: Changes in HLTF expression patterns could potentially serve as biomarkers for response to certain cancer therapies, particularly those targeting DNA repair pathways. Flow cytometry with FITC-conjugated HLTF antibody would enable quantitative assessment of these changes.

These emerging applications represent promising research directions where FITC-conjugated HLTF antibody could contribute to significant scientific advances.

How might HLTF expression analysis inform cancer progression models and therapeutic strategies?

HLTF expression analysis using FITC-conjugated antibodies can provide valuable insights for cancer research with direct implications for therapeutic development:

  • Cancer evolution monitoring: Studies have shown that HLTF expression undergoes dynamic changes during cancer progression. In experimental models, HLTF expression decreases from 100% in early tumor buds to approximately 10% in advanced tumors . This pattern suggests that:

    • HLTF could serve as a marker for tracking cancer evolution

    • The loss of HLTF expression might be associated with more aggressive phenotypes

    • Flow cytometry with FITC-conjugated HLTF antibody enables quantitative assessment of these population dynamics

  • Therapy resistance mechanisms: HLTF's role in DNA repair suggests that its expression status might influence response to DNA-damaging therapies:

    • HLTF-expressing cells may have enhanced repair capabilities and potentially greater resistance to certain chemotherapeutics

    • Identifying and quantifying HLTF-positive versus HLTF-negative populations using flow cytometry could predict heterogeneous treatment responses

    • Combined analysis with other DNA repair markers could create response prediction panels

  • Metastasis potential assessment: The correlation between HLTF expression changes and cancer progression suggests potential utility in predicting metastatic potential:

    • Flow cytometry analysis of HLTF expression in primary tumors versus metastatic sites

    • Correlation of circulating tumor cell HLTF expression with metastatic outcomes

    • Integration of HLTF expression data with other metastasis markers for improved prognostication

  • Targeted therapy development: Understanding HLTF's functional roles through expression analysis can inform development of targeted therapies:

    • HLTF-positive cancer cells might be vulnerable to inhibitors targeting its helicase or E3 ubiquitin ligase activities

    • HLTF-negative cells might have synthetic lethal vulnerabilities due to compromised DNA repair capabilities

    • Quantitative assessment of HLTF expression using FITC-conjugated antibodies would be essential for patient stratification in such therapeutic approaches

This expression analysis approach using FITC-conjugated HLTF antibody offers a methodological framework for translating basic cancer biology insights into clinical applications through precise quantification and characterization of HLTF-expressing cell populations.

What methodological advances might improve detection sensitivity and specificity for HLTF in complex biological samples?

Several methodological advances could enhance the sensitivity and specificity of HLTF detection in complex biological samples:

  • Signal amplification technologies:

    • Tyramide Signal Amplification (TSA): This enzyme-mediated amplification approach could be adapted for FITC-conjugated antibodies to enhance signal intensity by 10-100 fold for detecting low-abundance HLTF

    • Proximity Ligation Assay (PLA): Combining FITC-conjugated HLTF antibody with antibodies against known HLTF-interacting proteins in a PLA format would increase specificity by detecting only HLTF molecules in relevant protein complexes

  • Advanced microscopy techniques:

    • Super-resolution microscopy: Techniques like STORM or PALM could improve spatial resolution of HLTF detection beyond the diffraction limit, enabling visualization of HLTF distribution within nuclear microdomains

    • Light-sheet microscopy: This approach could enable sensitive detection of HLTF in thick tissue sections with reduced photobleaching of the FITC signal

  • Multimodal detection approaches:

    • Combined fluorescence and mass spectrometry imaging: Correlating FITC-HLTF antibody signals with mass spectrometry data would provide orthogonal validation of HLTF detection

    • RNA-protein co-detection: Simultaneous visualization of HLTF protein (via FITC-antibody) and HLTF mRNA (via fluorescent in situ hybridization) would enhance confidence in detection specificity

  • Machine learning-assisted image analysis:

    • Developing deep learning algorithms trained on validated HLTF staining patterns to automatically identify specific versus non-specific signals

    • Integration of multiparameter data (morphology, intensity, co-localization) to improve discrimination between true and false positive signals

  • Microfluidic enrichment techniques:

    • Development of microfluidic platforms incorporating FITC-conjugated HLTF antibodies for selective capture and enrichment of HLTF-expressing cells from heterogeneous samples like blood or tumor digests

    • Integration with downstream single-cell analysis platforms for comprehensive characterization

  • Antibody engineering approaches:

    • Development of recombinant antibody fragments with enhanced specificity for HLTF epitopes

    • Creation of bispecific antibodies targeting HLTF and a second cancer-relevant protein to improve detection specificity in oncology applications

By integrating these methodological advances, researchers could achieve significant improvements in both sensitivity and specificity of HLTF detection across various experimental platforms, from basic research to potential clinical applications.

What are the best practices for storage and handling of FITC-conjugated HLTF antibody to ensure optimal performance?

To maintain optimal performance of FITC-conjugated HLTF antibody, researchers should adhere to these evidence-based best practices:

  • Storage conditions:

    • Store at -20°C in the dark to protect the FITC fluorophore from photobleaching

    • Maintain in buffer containing 0.02% sodium azide and 50% glycerol at pH 7.3 as specified in manufacturer protocols

    • Aliquot upon receipt to minimize freeze-thaw cycles; small aliquots (e.g., 20μL) are recommended

  • Handling precautions:

    • Minimize exposure to light during all handling steps

    • Work in reduced ambient lighting when preparing dilutions

    • Use amber tubes or wrap tubes in aluminum foil when working with the antibody

    • Return to -20°C storage promptly after use

  • Dilution and preparation:

    • Thaw aliquots on ice or at 4°C rather than at room temperature

    • Centrifuge briefly before opening tubes to collect liquid at the bottom

    • Prepare working dilutions in appropriate buffers immediately before use

    • For long-term storage of working dilutions, add carriers such as 0.1% BSA to prevent antibody adsorption to tube walls

  • Safety considerations:

    • Follow standard laboratory safety procedures when handling

    • Note that some formulations contain sodium azide, which requires special disposal considerations to prevent accumulation of potentially explosive deposits in plumbing

  • Quality control measures:

    • Periodically validate antibody performance using positive control samples (e.g., HeLa or K-562 cells)

    • Document lot-to-lot variations by running parallel experiments with new and previous antibody lots

    • Maintain detailed records of antibody performance under various conditions

Adherence to these storage and handling practices will help ensure consistent performance and maximize the useful lifespan of FITC-conjugated HLTF antibody preparations.

What interdisciplinary collaborations would benefit from HLTF expression analysis using FITC-conjugated antibodies?

Interdisciplinary collaborations leveraging FITC-conjugated HLTF antibody technology could drive significant advances across multiple research domains:

  • Cancer Biology and Clinical Oncology:

    • Collaboration between basic researchers and clinical oncologists to correlate HLTF expression patterns with patient outcomes

    • Development of HLTF-based companion diagnostics for stratifying patients in clinical trials

    • Integration of HLTF expression data with genomic profiling to identify molecular subtypes of cancers

  • DNA Repair and Genome Stability Research:

    • Partnerships between DNA repair biochemists and cell biologists to visualize HLTF recruitment to damaged DNA in real-time

    • Correlation of HLTF expression patterns with genomic instability markers in cancer and aging models

    • Investigation of HLTF's role in replication stress responses through multiparameter imaging

  • Drug Discovery and Pharmaceutical Research:

    • Collaboration with medicinal chemists to develop and test compounds targeting HLTF or synthetic lethal partners

    • High-content screening platforms incorporating FITC-HLTF antibody to identify modulators of HLTF expression or localization

    • Biomarker development for emerging therapeutic approaches targeting DNA repair pathways

  • Bioinformatics and Systems Biology:

    • Integration of HLTF expression data from imaging and flow cytometry with multi-omics datasets

    • Development of machine learning approaches to identify patterns in HLTF expression across cancer types

    • Modeling the impact of HLTF expression heterogeneity on tumor evolution

  • Developmental Biology and Stem Cell Research:

    • Exploration of HLTF's role in stem cell maintenance and differentiation

    • Investigation of HLTF expression during embryonic development and tissue regeneration

    • Correlation of HLTF expression with epigenetic modifications during cellular state transitions

  • Bioengineering and Nanotechnology:

    • Development of nanoparticle-based delivery systems targeting HLTF-expressing cells

    • Creation of microfluidic platforms for isolation and characterization of HLTF-expressing cells

    • Engineering of biosensors incorporating FITC-conjugated antibody fragments for real-time monitoring of HLTF expression

These collaborative approaches would leverage the specificity and versatility of FITC-conjugated HLTF antibody technology to address complex biological questions across disciplines, potentially yielding transformative insights and applications.

How should researchers evaluate and compare different FITC-conjugated HLTF antibodies from various suppliers?

When evaluating FITC-conjugated HLTF antibodies from different suppliers, researchers should employ a systematic comparison approach:

  • Antibody specifications assessment:

    • Epitope comparison: Determine which region of HLTF each antibody targets (e.g., AA 332-476, N-terminal, C-terminal)

    • Clonality: Compare performance of monoclonal versus polyclonal antibodies for your specific application

    • Host species: Consider implications for co-staining with other antibodies

    • Purification method: Evaluate whether antibodies are affinity-purified (e.g., Protein G purification with >95% purity)

    • Immunogen: Review the specific HLTF sequence used to generate each antibody

  • Validation data comparison:

    Validation ParameterAssessment MethodAcceptance Criteria
    SpecificityWestern blot showing single band at expected MW (114 kDa)Clear single band with minimal non-specific binding
    SensitivityTitration series in flow cytometry or IFDetectable signal at ≤1:500 dilution
    ReproducibilitySame experiment performed across multiple lotsConsistent staining pattern and intensity
    Application versatilityValidated performance across multiple applicationsConsistent performance in your specific application
    Cross-reactivityTesting across species of interestConfirmed reactivity with target species
  • Head-to-head experimental comparison:

    • Test multiple antibodies simultaneously on:

      • Positive control cells (e.g., HeLa, K-562)

      • Negative control samples (HLTF knockdown/knockout)

      • Research samples of interest

    • Compare:

      • Signal-to-noise ratio

      • Staining pattern consistency with literature

      • Lot-to-lot consistency

      • Stability over time

  • Supplier support evaluation:

    • Technical documentation completeness

    • Availability of application-specific protocols

    • Responsiveness to technical inquiries

    • Replacement policies for underperforming products

  • Cost-benefit analysis:

    • Price per experiment (considering optimal dilution)

    • Quantity needed for planned experiments

    • Shipping and storage requirements

    • Potential downstream costs of antibody failure

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