HMI1 Antibody

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Description

Mechanism of Action

Anti-HMGB1 antibodies target the protein’s interaction with the RAGE receptor, a key mediator of inflammation. HMGB1 is passively released from necrotic cells or actively secreted by immune cells during injury, triggering inflammatory cascades . Antibodies block this interaction, reducing downstream signaling pathways such as ERK phosphorylation and ICAM-1 expression .

Target InteractionEffectReference
HMGB1/RAGE axisInhibits cytokine signaling
Heparin-binding domainBlocks extracellular HMGB1 activity

Ischemic Stroke and Cerebral Ischemia

Monoclonal antibodies (e.g., anti-HMGB1 mAb) have shown efficacy in reducing brain damage in rat models of cerebral ischemia/reperfusion injury. Key findings:

  • Blood-brain barrier penetration: Synthetic antibodies cross the BBB to accumulate in ischemic regions .

  • Neuroprotective effects: Reduced apoptosis, BBB permeability, and inflammation-related factors (e.g., IL-1β, TNF-α) .

ModelTreatmentOutcome
t-MCAO ratsAnti-HMGB1 SA50% reduction in brain damage

Acute Liver Injury

Partially humanized antibodies (e.g., h2G7) mitigate acetaminophen-induced liver injury by neutralizing HMGB1. Results include:

  • Therapeutic window: Extended efficacy beyond N-acetylcysteine (NAC) .

  • Inflammatory suppression: Reduced liver necrosis and cytokine release (IL-6, IL-1β) .

ModelAntibodyEffect
APAP-ALI miceh2G7 mAb40% survival improvement

Epilepsy

Anti-HMGB1 mAb reduces neuronal apoptosis and seizure severity in epilepsy models. Mechanisms include:

  • HMGB1 translocation inhibition: Prevents release into extracellular space .

  • Inflammation modulation: Suppresses IL-1β and TLR-4 expression .

OutcomeMeasurementAnti-HMGB1 mAb Effect
Seizure latencyRacine stage 5Prolonged by 30%

Antibody Design and Synthesis

Synthetic antibodies (e.g., SA) are engineered as copolymer nanoparticles with nanomolar affinity for HMGB1. Key features:

  • Combinatorial design: Selected from libraries of functional monomers (e.g., trisulfated GlcNAc) .

  • Heparin-binding specificity: Dominant interaction at the heparin-binding domain .

Antibody TypeStructureAffinity
Synthetic antibody (SA)NIPAm hydrogel copolymer~10 nM
Monoclonal antibody (mAb)Humanized IgG~100 nM

Research Challenges and Future Directions

  • Translation to humans: Phase I/II trials are pending for ischemic stroke and liver injury .

  • Biomarker identification: HMGB1 serum levels may guide patient stratification .

  • Combination therapies: Synergy with anti-inflammatory drugs (e.g., NAC) under investigation .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
HMI1 antibody; YOL095C antibody; O0920 antibody; ATP-dependent DNA helicase HMI1 antibody; mitochondrial antibody; EC 3.6.4.12 antibody
Target Names
HMI1
Uniprot No.

Target Background

Function
HMI1 Antibody is essential for mitochondrial genome maintenance and inheritance of mitochondrial DNA.
Gene References Into Functions
  1. Mutations in HMI1 lead to fragmentation of wild-type mitochondrial DNA, resulting in loss of the wild-type mitochondrial genome. PMID: 15690159
  2. Hmi1p, a DNA helicase, may be targeted to specific 3'-flap structures, suggesting its potential role in DNA recombination. PMID: 15855170
  3. hMI1, a DNA helicase, plays a crucial role in the maintenance of mtDNA. PMID: 16358299
Database Links

KEGG: sce:YOL095C

STRING: 4932.YOL095C

Protein Families
Helicase family, UvrD subfamily
Subcellular Location
Mitochondrion inner membrane; Peripheral membrane protein.

Q&A

What is HMI1 and what is the HMI1 Antibody used for in research?

HMI1 Antibody (such as the CUSABIO product CSB-PA612273XA01SVG) is used in immunological detection of HMI1 protein across various research applications . While specific information about HMI1's function is limited in the provided sources, antibodies generally serve as crucial tools for protein detection, localization, and characterization in experimental systems.

The methodological approach to using HMI1 Antibody typically involves:

  • Selection of appropriate detection method based on research question (immunoblotting, immunohistochemistry, immunoprecipitation, etc.)

  • Optimization of antibody concentration through titration experiments

  • Inclusion of appropriate controls to validate specificity

  • Analysis of results in context of experimental conditions and limitations

Similar to antibody applications seen with other proteins, such as influenza hemagglutinin studies, HMI1 Antibody would need validation across different assay platforms to confirm its utility for specific research questions .

What are the different types of assays where HMI1 Antibody can be applied?

HMI1 Antibody can be applied across multiple immunological techniques, each requiring specific optimization. The methodological considerations for each assay include:

Western Blotting/Immunoblotting:

  • Sample preparation: Optimization of lysis buffers to maintain protein conformation

  • Blocking conditions: Typically 3-5% BSA or milk protein to reduce background

  • Antibody dilution: Starting with manufacturer recommendations (typically 1:500-1:2000)

  • Detection system: HRP-conjugated secondary antibodies with chemiluminescent substrates

Immunoprecipitation:

  • Pre-clearing lysates to reduce non-specific binding

  • Antibody-bead conjugation methods (direct vs. indirect coupling)

  • Elution conditions that preserve protein integrity

ELISA Applications:

  • Similar to techniques used by manufacturers like CUSABIO in their development of ELISA kits

  • Optimization of coating conditions, blocking buffers, and detection systems

  • Cross-validation with other assay formats to confirm specificity

Immunofluorescence/Immunohistochemistry:

  • Fixation method selection (paraformaldehyde vs. methanol) based on epitope sensitivity

  • Permeabilization conditions if intracellular detection is required

  • Antigen retrieval methods for fixed tissue samples

How should HMI1 Antibody samples be stored and handled for optimal performance?

Proper storage and handling of antibodies is critical for maintaining their performance over time. The methodological approach should include:

Storage Conditions:

  • Store antibody aliquots at -20°C for long-term stability

  • Avoid repeated freeze-thaw cycles by creating single-use aliquots

  • For working solutions, store at 4°C with appropriate preservatives (0.02% sodium azide)

  • Monitor for signs of degradation (precipitation, loss of activity)

Handling Protocols:

  • Maintain sterile technique when handling antibody solutions

  • Allow frozen aliquots to thaw completely at 4°C before use

  • Centrifuge antibody vials briefly before opening to collect solution at the bottom

  • Use non-stick tubes for dilute antibody solutions to prevent adsorption

Stability Assessment:

  • Implement routine quality control testing of antibody performance

  • Include positive controls in each experiment to monitor consistency

  • Document lot-to-lot variation if observed

This approach parallels handling protocols used in studies of other antibodies, such as those investigating hemagglutinin inhibition assays in influenza research .

What validation methods are recommended for confirming HMI1 Antibody specificity?

Antibody validation is essential for ensuring experimental rigor. Recommended methodological approaches include:

Primary Validation Methods:

  • Genetic knockout/knockdown controls (comparing signal in HMI1-expressing vs. HMI1-depleted samples)

  • Peptide competition assays to demonstrate epitope-specific binding

  • Testing across multiple cell/tissue types with known HMI1 expression patterns

  • Molecular weight verification on Western blots

Secondary Validation Methods:

  • Immunoprecipitation followed by mass spectrometry analysis

  • Comparison of staining patterns with multiple antibodies targeting different HMI1 epitopes

  • Correlation of protein detection with mRNA expression data

Analytical Validation:

  • Determination of linear dynamic range for quantitative applications

  • Assessment of potential cross-reactivity with related proteins

  • Evaluation of batch-to-batch consistency

Similar validation methods have been employed in studies examining antibody responses to viral antigens, demonstrating their broad applicability across immunological research .

How does one interpret unexpected results when using HMI1 Antibody?

When faced with unexpected results, a systematic troubleshooting approach is essential:

Methodological Analysis Process:

  • Evaluate technical factors:

    • Antibody concentration (too high: background; too low: weak signal)

    • Incubation conditions (time, temperature, buffer composition)

    • Detection system sensitivity and specificity

  • Consider biological factors:

    • Post-translational modifications affecting epitope recognition

    • Splice variants or protein isoforms

    • Protein-protein interactions masking epitopes

    • Conformational changes under experimental conditions

  • Implement control experiments:

    • Positive and negative controls (tissues/cells with known HMI1 expression profiles)

    • Secondary antibody-only controls to assess non-specific binding

    • Pre-immune serum controls if using polyclonal antibodies

  • Compare results across techniques:

    • Cross-validate findings using orthogonal methods

This systematic approach mirrors that used in studies examining "HAI non-responders" in influenza research, where unexpected antibody response patterns required careful investigation of alternative mechanisms .

What are the technical considerations for using HMI1 Antibody in multiplex immunoassays?

Multiplex immunoassays allow simultaneous detection of multiple targets, but require careful optimization:

Methodological Approach:

  • Antibody compatibility assessment:

    • Cross-reactivity testing between primary antibodies

    • Testing for competition between antibodies for similar epitopes

    • Verification that detection reagents don't cross-react

  • Signal separation strategies:

    • For fluorescence-based detection: selecting non-overlapping fluorophores

    • For chromogenic detection: using distinct substrates/detection methods

    • Implementing appropriate spectral unmixing algorithms for analysis

  • Validation procedures specific to multiplex settings:

    • Comparing multiplex results to single-plex detection

    • Spike-in experiments to verify detection specificity in complex mixtures

    • Blocking experiments to confirm signal specificity

Optimization Table for Multiplex Assays with HMI1 Antibody:

ParameterStarting ConditionOptimization RangeEvaluation Metric
Antibody concentrationManufacturer recommendation0.5-5× recommendedSignal-to-noise ratio
Incubation time1 hour at room temperature30 min-overnight, 4-37°CSignal intensity vs. background
Blocking agent5% BSA1-10% BSA, milk, normal serumBackground reduction
Washing stringencyPBS-T (0.1% Tween)0.05-0.5% Tween, addition of NaClNon-specific signal reduction

Similar optimization approaches have been applied in ELISA development by organizations like CUSABIO, which produce various antibody-based detection systems .

How can researchers troubleshoot non-specific binding when using HMI1 Antibody?

Non-specific binding is a common challenge in antibody-based applications that requires systematic troubleshooting:

Methodological Troubleshooting Approach:

  • Modify blocking conditions:

    • Test different blocking agents (BSA, milk, normal serum, commercial blockers)

    • Increase blocking time and/or concentration

    • Use casein-based blockers for particularly problematic samples

  • Adjust antibody parameters:

    • Further dilute primary antibody

    • Reduce incubation temperature (4°C instead of room temperature)

    • Add competing proteins to antibody diluent (0.1-1% BSA)

    • Pre-adsorb antibody with related antigens to remove cross-reactivity

  • Modify washing protocols:

    • Increase wash buffer stringency (add 0.5M NaCl)

    • Extend washing times and number of washes

    • Add detergent (0.1-0.5% Triton X-100) for intracellular applications

  • Sample preparation modifications:

    • Additional pre-clearing steps for complex samples

    • Protein A/G pre-incubation to remove endogenous immunoglobulins

    • Use of commercial background reducers specific to sample type

These approaches parallel methods used in studies of antibody specificity, such as those examining alternative antibody responses in influenza research .

What are the optimal conditions for using HMI1 Antibody in different experimental contexts?

Optimal conditions vary significantly across experimental applications:

Western Blotting Optimization:

  • Sample preparation: RIPA buffer with protease inhibitors for most applications

  • Transfer conditions: Semi-dry for proteins <100kDa, wet transfer for larger proteins

  • Blocking: 5% non-fat milk in TBS-T (0.1% Tween-20) for 1 hour at room temperature

  • Primary antibody: 1:1000 dilution in 5% BSA/TBS-T, overnight at 4°C

  • Washing: 3 × 10 minutes in TBS-T

  • Secondary antibody: 1:5000 HRP-conjugated in 5% milk/TBS-T, 1 hour at room temperature

Immunoprecipitation Protocol:

  • Lysis buffer: Non-denaturing (e.g., NP-40 buffer) with protease/phosphatase inhibitors

  • Pre-clearing: 1 hour with protein A/G beads

  • Antibody binding: 2-5 μg antibody per 500 μg protein lysate, overnight at 4°C

  • Bead capture: 2 hours with protein A/G beads at 4°C

  • Washing: 4 × 5 minutes with lysis buffer, final wash with PBS

  • Elution: Gentle (non-reducing conditions) or denaturing based on downstream applications

Immunofluorescence Protocol:

  • Fixation: 4% paraformaldehyde, 10 minutes at room temperature

  • Permeabilization: 0.1% Triton X-100, 5 minutes at room temperature

  • Blocking: 5% normal serum from secondary antibody host species, 1 hour

  • Primary antibody: 1:200 dilution, overnight at 4°C

  • Washing: 3 × 5 minutes with PBS

  • Secondary antibody: 1:500 dilution, 1 hour at room temperature

Similar optimization approaches have been used for antibody applications in studies examining epitope-tagged receptors .

How does epitope accessibility affect HMI1 Antibody binding in fixed versus live cell applications?

Epitope accessibility significantly impacts antibody performance across different sample preparations:

Methodological Comparison of Fixation Methods:

Fixation MethodAdvantagesLimitationsRecommended Applications
Live cell (no fixation)Preserves native conformation, Allows dynamic studiesLimited to surface epitopes, May induce internalizationSurface receptor studies, Dynamic trafficking experiments
Paraformaldehyde (PFA)Good morphology preservation, Compatible with most epitopesCross-links proteins, May mask some epitopesGeneral immunofluorescence, Most intracellular proteins
MethanolExposes many intracellular epitopes, Good for cytoskeletal proteinsPoor membrane preservation, Protein denaturationCytoskeletal studies, Some nuclear proteins
AcetoneRapid fixation, Good for some nuclear antigensSignificant protein extraction, Poor membrane preservationNuclear antigen studies, Rapid protocols
GlutaraldehydeExcellent ultrastructural preservationSignificant autofluorescence, Strong epitope maskingElectron microscopy studies, Ultrastructural work

Epitope Accessibility Considerations:

  • Conformational vs. linear epitopes:

    • Conformational epitopes more sensitive to fixation-induced changes

    • Linear epitopes generally more robust across fixation methods

  • Epitope location considerations:

    • Cytoplasmic domains: Often require permeabilization

    • Membrane-spanning regions: Highly sensitive to fixation/extraction methods

    • Extracellular domains: Accessible in live cells, may be altered by fixation

  • Antigen retrieval approaches for fixed samples:

    • Heat-induced epitope retrieval (citrate buffer, pH 6.0)

    • Enzymatic retrieval (proteinase K, trypsin)

    • Detergent-based retrieval (SDS, Triton X-100)

These considerations parallel those in studies examining antibody binding to cellular receptors, such as research on human muscarinic cholinergic receptors .

What are the considerations for using HMI1 Antibody in conjunction with other antibodies for co-localization studies?

Co-localization studies require careful planning to ensure accurate results:

Methodological Approach to Multi-antibody Studies:

  • Antibody compatibility assessment:

    • Host species selection to avoid cross-reactivity with secondary antibodies

    • Fixation/permeabilization conditions compatible with all target epitopes

    • Sequential staining protocols for challenging combinations

  • Controls essential for co-localization studies:

    • Single antibody controls with all secondary antibodies to verify specificity

    • Fluorophore bleed-through controls (single fluorophore imaging across all channels)

    • Biological negative controls (tissues/cells without one or both targets)

    • Absorption controls (pre-incubation with blocking peptides)

  • Advanced imaging considerations:

    • Selection of fluorophores with minimal spectral overlap

    • Sequential scanning vs. simultaneous acquisition

    • Application of appropriate co-localization algorithms and statistics

    • Super-resolution techniques for closely associated proteins

  • Quantification approaches:

    • Pearson's correlation coefficient

    • Manders' overlap coefficient

    • Object-based co-localization analysis

    • Distance-based approaches for precise spatial relationships

This comprehensive approach ensures reliable co-localization data, similar to methods used in studies examining receptor localization and trafficking .

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