IGSF3 Antibody, HRP conjugated

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Description

Overview of IGSF3 and HRP-Conjugated Antibodies

IGSF3 belongs to the EWI subfamily of immunoglobulin-like proteins, containing eight C2-type Ig-like domains . It interacts with tetraspanins (e.g., CD9) and integrins, modulating cell migration, apoptosis, and barrier function . Deficiencies in IGSF3 have been linked to chronic obstructive pulmonary disease (COPD) and hepatocellular carcinoma (HCC) .

The HRP-conjugated antibody is a rabbit polyclonal antibody raised against specific regions of human IGSF3 (e.g., AA 111–399) . HRP conjugation allows colorimetric detection via chromogenic substrates (e.g., TMB), enhancing sensitivity in ELISA and related assays .

ELISA for Quantitative Detection

The HRP-conjugated IGSF3 antibody is optimized for ELISA, enabling precise quantification of IGSF3 levels in serum, cell lysates, or tissue homogenates . Its specificity for the AA 111–399 region ensures minimal cross-reactivity with other proteins .

Functional Studies in Disease Models

  • COPD: IGSF3 deficiency disrupts sphingolipid metabolism and barrier function in lung cells, exacerbating injury repair . The antibody aids in studying these mechanisms.

  • HCC: IGSF3 overexpression correlates with NF-κB activation, promoting tumor migration and invasion. HRP-conjugated antibodies facilitate biomarker validation in HCC models .

Role in COPD

A chromosomal translocation disrupting IGSF3 led to severe emphysema, highlighting its role in lung cell adhesion and repair . IGSF3 interacts with CD9 and integrin β1, maintaining membrane integrity .

Biomarker Potential in HCC

IGSF3 is upregulated in HCC tissues and cell lines. Silencing IGSF3 inhibits NF-κB signaling, reducing tumor growth in vitro and in vivo . The HRP-conjugated antibody supports its validation as a diagnostic/prognostic marker.

Comparative Analysis of Available Products

SupplierCatalog No.Immunogen RegionHostApplicationsDilution
Antibodies-OnlineABIN7156109AA 111–399RabbitELISAN/A
Abbexa LtdN/AAA 111–399RabbitELISAOptimal dilution determined empirically

Note: Both antibodies target the same epitope but differ in supplier-specific optimization .

Future Directions and Considerations

  • Therapeutic Targeting: Inhibiting IGSF3-NF-κB interactions may offer strategies for HCC treatment .

  • Cross-Species Studies: Mouse IGSF3 shares 92% homology with human IGSF3, enabling preclinical model validation .

  • Method Optimization: HRP-conjugated antibodies require careful dilution to avoid background noise in ELISA .

References and Data Sources

  1. Assay Genie (CAB12449): Detailed antibody specifications for IGSF3 detection.

  2. Antibodies-Online (ABIN7156109): HRP-conjugated rabbit polyclonal antibody for ELISA.

  3. PMC (PMC7453886): IGSF3’s role in COPD and sphingolipid metabolism.

  4. PMC (PMC7186720): IGSF3 as an HCC biomarker and NF-κB pathway activation.

  5. Abbexa Ltd: Technical details for HRP-conjugated IGSF3 antibody.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
We typically dispatch orders within 1-3 business days of receipt. Delivery times may vary depending on the purchasing method and location. For specific delivery times, please consult your local distributor.
Synonyms
Immunoglobulin superfamily member 3 (IgSF3) (Glu-Trp-Ile EWI motif-containing protein 3) (EWI-3), IGSF3, EWI3 KIAA0466
Target Names
IGSF3
Uniprot No.

Target Background

Gene References Into Functions
  1. Our research on an IGSF3 mutation in a family with congenital nasolacrimal duct obstruction suggests that disruption of IGSF3 is the most likely cause of autosomal recessive nasolacrimal duct obstruction. PMID: 24372406
Database Links

HGNC: 5950

OMIM: 149700

KEGG: hsa:3321

STRING: 9606.ENSP00000321184

UniGene: Hs.171057

Involvement In Disease
Lacrimal duct defect (LCDD)
Subcellular Location
Membrane; Single-pass type I membrane protein.
Tissue Specificity
Expressed in a wide range of tissues with High expression in Placenta, kidney and lung.

Q&A

What is IGSF3 and why is it targeted in research applications?

IGSF3 (Immunoglobulin Superfamily Member 3) is a membrane-localized protein with a canonical form of 1194 amino acid residues and a molecular mass of approximately 135.2 kDa in humans. It belongs to the immunoglobulin superfamily and is also known by several synonyms including LCDD, V8, glu-Trp-Ile EWI motif-containing protein 3, and EWI-3 . IGSF3 has drawn research interest due to its high expression in placenta, kidney, and lung tissues, and its association with lacrimal duct defects . The protein undergoes glycosylation as a post-translational modification, and up to two different isoforms have been reported . Given its membrane localization and tissue-specific expression patterns, IGSF3 is studied for potential roles in cellular adhesion, signaling, and tissue development. Researchers target this protein to understand its biological functions and potential implications in developmental disorders and disease processes.

What are the primary applications for HRP-conjugated IGSF3 antibodies?

HRP-conjugated IGSF3 antibodies are primarily optimized for ELISA (Enzyme-Linked Immunosorbent Assay) applications . The horseradish peroxidase conjugation provides a direct enzymatic detection method that eliminates the need for secondary antibodies, simplifying workflows and potentially reducing background signal. While ELISA is the main application, researchers should be aware that unconjugated IGSF3 antibodies have been validated for additional techniques including Western Blot (WB), Flow Cytometry (FCM), Immunohistochemistry (IHC), and Immunofluorescence (IF) . When considering using HRP-conjugated antibodies for applications beyond ELISA, researchers should conduct preliminary validation studies to confirm suitability, as the conjugation could potentially affect binding characteristics in some contexts.

What is the expected molecular weight for IGSF3 detection in Western blot applications?

While the canonical molecular weight of IGSF3 is reported as 135.2 kDa based on amino acid sequence , Western blot detection typically reveals a band at approximately 200 kDa . This significant difference between theoretical and observed molecular weight is attributed to post-translational modifications, particularly glycosylation, which is known to occur in IGSF3 . When performing Western blot analysis, researchers should expect to observe IGSF3 at approximately 200 kDa under non-reducing conditions . It's important to note that some studies specifically indicate detection under non-reducing conditions only , suggesting that the protein's conformation and epitope accessibility may be significantly altered under reducing conditions, potentially affecting antibody recognition.

Which human tissues and cell lines are optimal for IGSF3 studies?

Based on expression data and validated research applications, human lung tissue and the A549 human lung carcinoma cell line have been demonstrated as reliable biological sources for IGSF3 detection . IGSF3 shows high expression in placenta, kidney, and lung tissues , making these primary tissues valuable for studying endogenous expression. For cell culture models, A549 cells have been validated for IGSF3 expression using both flow cytometry and Western blot techniques . When selecting experimental models, researchers should consider these validated sources while recognizing that IGSF3 expression may vary with cell state, culture conditions, and experimental manipulations. For novel tissue or cell line applications, preliminary validation of IGSF3 expression levels is recommended before proceeding with extensive experimental work.

How should sample preparation be optimized for IGSF3 detection using HRP-conjugated antibodies?

Sample preparation for IGSF3 detection requires careful consideration of the protein's membrane localization and post-translational modifications. For Western blot applications, non-reducing conditions appear critical for optimal detection . Researchers should use lysis buffers containing appropriate detergents (such as NP-40 or Triton X-100) to efficiently solubilize membrane proteins while preserving epitope integrity. When preparing samples, maintain protein samples at 4°C and include protease inhibitors to prevent degradation. For ELISA applications with HRP-conjugated antibodies, sample dilution optimization is essential, as both over-dilution (leading to weak signals) and under-dilution (causing high background) can compromise results.

The following sample preparation protocol is recommended for Western blot applications:

  • Harvest cells/tissue and wash in cold PBS

  • Lyse in membrane protein extraction buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.4, 1% NP-40, protease inhibitor cocktail)

  • Incubate on ice for 30 minutes with occasional vortexing

  • Centrifuge at 14,000g for 15 minutes at 4°C

  • Collect supernatant and determine protein concentration

  • Mix with non-reducing sample buffer (no DTT or β-mercaptoethanol)

  • Do not heat samples before loading onto gels

For ELISA applications with HRP-conjugated antibodies, maintain samples in buffers compatible with the assay format and avoid detergents that might interfere with antibody-antigen binding.

What is the optimal antibody dilution range for HRP-conjugated IGSF3 antibodies in various applications?

Optimal antibody dilution is application-specific and should be determined experimentally for each lot of antibody. For HRP-conjugated IGSF3 antibodies in ELISA applications, a recommended starting dilution range is 1:1000 to 1:5000 . Performing a dilution series (e.g., 1:500, 1:1000, 1:2000, 1:5000, 1:10000) during initial optimization can help identify the dilution that maximizes specific signal while minimizing background.

For reference, unconjugated IGSF3 antibodies have been used at the following concentrations in other applications:

  • Western blot: 1-2 μg/mL

  • Flow cytometry: 10 μg/mL (approximate starting concentration)

When using HRP-conjugated antibodies in applications beyond their primary recommended use, researchers should start with more conservative dilutions (higher antibody concentration) and optimize based on signal-to-noise ratios. Remember that over-dilution can lead to false negatives, while insufficient dilution can increase non-specific binding and background.

What controls are essential when using HRP-conjugated IGSF3 antibodies?

Robust experimental design requires appropriate controls to validate results and ensure reliable interpretations. When using HRP-conjugated IGSF3 antibodies, the following controls should be considered:

  • Positive control: Include samples known to express IGSF3, such as human lung tissue or A549 cells

  • Negative control: Include samples known not to express IGSF3, or samples where IGSF3 expression has been knocked down

  • Isotype control: For flow cytometry applications, include an appropriate isotype control antibody with HRP conjugation to determine background levels

  • Blocking peptide control: Where available, use a specific blocking peptide corresponding to the immunogen to confirm antibody specificity

  • Secondary antibody-only control: For troubleshooting, include a control lacking primary antibody to assess background from the detection system

  • Loading control: For Western blot applications, include detection of a housekeeping protein to normalize for loading variations

  • Recombinant protein standard: Where possible, include purified IGSF3 protein as a positive control and for quantification purposes

These controls help distinguish specific signals from background and validate the performance of HRP-conjugated IGSF3 antibodies in experimental workflows.

How can ELISA protocols be optimized specifically for HRP-conjugated IGSF3 antibodies?

ELISA protocols using HRP-conjugated IGSF3 antibodies can be optimized through careful attention to several key parameters:

  • Coating optimization: For sandwich ELISA, use a validated capture antibody (typically unconjugated) at 1-5 μg/mL in coating buffer (usually carbonate-bicarbonate pH 9.6). For direct ELISA, coat plates with purified antigen or sample at optimized concentration.

  • Blocking optimization: Test different blocking agents (BSA, milk proteins, commercial blockers) at 1-5% concentration to identify the formulation that minimizes background without interfering with specific binding.

  • Sample preparation: Dilute samples in appropriate buffers that maintain protein stability while minimizing matrix effects.

  • Antibody incubation: Optimize both concentration (as described in section 2.2) and incubation time (typically 1-2 hours at room temperature or overnight at 4°C).

  • Washing optimization: Determine optimal washing buffer composition (typically PBS-T) and number of wash cycles to remove unbound antibody while preserving specific interactions.

  • Substrate selection: Choose an appropriate HRP substrate based on required sensitivity (TMB, ABTS, or chemiluminescent substrates).

  • Signal development and kinetics: Monitor the development of signal over time to determine optimal substrate incubation period before stopping the reaction.

The following table summarizes key optimization parameters for ELISA using HRP-conjugated IGSF3 antibodies:

ParameterRecommendationOptimization Range
Capture antibody2 μg/mL in carbonate buffer pH 9.61-5 μg/mL
Blocking agent3% BSA in PBS1-5% BSA, milk alternatives
Sample dilutionApplication-dependentSerial dilutions recommended
HRP-conjugated IGSF3 antibody1:2000 in blocking buffer1:1000-1:5000
Incubation time2 hours at RT or overnight at 4°C1-3 hours RT, 4-16 hours at 4°C
Wash cycles4 × 300 μL PBST (0.05% Tween-20)3-5 wash cycles
SubstrateTMBTMB, ABTS, OPD, or chemiluminescent
Development time15 minutes in dark5-30 minutes

How do IGSF3 isoforms impact antibody selection and experimental design?

IGSF3 has been reported to have up to two different isoforms , which can significantly impact antibody selection and experimental outcomes. When designing experiments, researchers should consider which isoform(s) are relevant to their research question and select antibodies accordingly. The HRP-conjugated IGSF3 antibody (ABIN7156109) targets amino acids 111-399 , which may have different accessibility or presence in various isoforms.

Key considerations for addressing isoform variability include:

  • Epitope mapping: Review the specific epitope targeted by the antibody and determine whether this region is present in all isoforms of interest.

  • Isoform-specific detection: For experiments requiring discrimination between isoforms, select antibodies that target unique regions or supplement with molecular techniques like RT-PCR with isoform-specific primers.

  • Molecular weight verification: Different isoforms may exhibit distinct molecular weights on Western blots; document and characterize these differences in your experimental system.

  • Tissue/cell specificity: Determine whether different isoforms show tissue or cell-specific expression patterns that might affect your experimental design.

  • Functional significance: Consider whether different isoforms may have distinct functional roles that could impact biological interpretations of your results.

When using HRP-conjugated IGSF3 antibodies, preliminary experiments to characterize which isoforms are detected in your specific experimental system will strengthen the validity and interpretation of results.

What are the key differences between polyclonal and monoclonal IGSF3 antibodies, and how do these impact experimental applications?

The HRP-conjugated IGSF3 antibody (ABIN7156109) is a polyclonal antibody raised in rabbits . Understanding the differences between polyclonal and monoclonal antibodies is crucial for experimental design and interpretation:

Polyclonal IGSF3 Antibodies:

  • Recognize multiple epitopes on the IGSF3 protein, potentially increasing detection sensitivity

  • May provide more robust detection across different experimental conditions and applications

  • Can be less affected by minor changes in protein conformation or post-translational modifications

  • May exhibit higher batch-to-batch variability, requiring validation across lots

  • Generally exhibit higher background due to potential cross-reactivity

Monoclonal IGSF3 Antibodies:

  • Target a single epitope with high specificity

  • Provide more consistent results with lower batch-to-batch variability

  • May be more sensitive to changes in protein conformation or post-translational modifications that affect the specific epitope

  • Often have lower background signal in applications like IHC and IF

  • May have reduced sensitivity compared to polyclonals in some applications

For applications using HRP-conjugated IGSF3 polyclonal antibodies, researchers should:

  • Validate specificity through appropriate controls

  • Consider epitope availability in different sample preparation conditions

  • Be aware that detection may represent multiple epitopes on the protein

  • Validate new antibody lots before use in critical experiments

The choice between polyclonal and monoclonal antibodies should align with experimental goals, balancing the need for sensitivity, specificity, and reproducibility.

How can multiplexed detection approaches be implemented when studying IGSF3 alongside other proteins?

Multiplexed detection allows simultaneous analysis of IGSF3 and other proteins of interest, providing insights into co-expression, co-localization, or functional relationships. When incorporating HRP-conjugated IGSF3 antibodies into multiplexed approaches, consider the following strategies:

For Western Blot Multiplexing:

  • Sequential detection: Strip and reprobe membranes, being mindful that stripping can reduce signal intensity for subsequent detections

  • Dual-color chemiluminescence: Use HRP-conjugated IGSF3 antibody with another antibody conjugated to a different enzyme (e.g., alkaline phosphatase) and differential substrates

  • Fluorescence multiplexing: Consider fluorescently labeled alternatives to HRP-conjugated antibodies for true multiplexing capabilities

For Flow Cytometry:

  • Use HRP-conjugated IGSF3 antibody alongside fluorescently-labeled antibodies against other targets

  • Consider fluorescent versions of IGSF3 antibodies (e.g., Alexa Fluor® 488-conjugated) for better multiplexing compatibility

For Immunohistochemistry/Immunofluorescence:

  • For brightfield IHC, use HRP-conjugated IGSF3 antibody on sequential sections rather than true multiplexing

  • For IF, fluorescent alternatives to HRP-conjugation provide better multiplexing options

When designing multiplexed experiments, careful consideration of antibody compatibility, signal separation, and appropriate controls is essential. Cross-reactivity between antibodies, spectral overlap, and signal intensity balancing are common challenges that require optimization for successful multiplexed detection.

What are the critical parameters for validating IGSF3 antibody specificity in research applications?

Thorough validation of antibody specificity is essential for reliable research results. For HRP-conjugated IGSF3 antibodies, consider these validation approaches:

  • Western blot characterization: Confirm detection at the expected molecular weight (~200 kDa) and verify band pattern consistency across multiple sample types

  • Positive and negative controls: Test antibody performance in tissues/cells with known high expression (lung, placenta, kidney) versus those with low/no expression

  • Peptide competition assay: Pre-incubate antibody with excess immunizing peptide (recombinant IGSF3 amino acids 111-399) to demonstrate signal reduction

  • Genetic knockdown/knockout: Validate antibody specificity using IGSF3 siRNA knockdown or CRISPR knockout models to confirm signal reduction

  • Cross-species reactivity: Assess performance across species to confirm specificity aligns with expected evolutionary conservation

  • Orthogonal detection methods: Compare results with alternative detection methods (e.g., mass spectrometry) or independent antibodies targeting different IGSF3 epitopes

  • Application-specific validation: Validate specifically for each intended application (ELISA, WB, FC), as performance may vary across applications

Documentation of these validation steps strengthens the reliability of research findings and should be included in publications to demonstrate antibody performance rigor.

Why might Western blot detection of IGSF3 show unexpected band patterns, and how should these be interpreted?

IGSF3 Western blot analysis may reveal unexpected band patterns for several reasons, requiring careful interpretation:

  • Higher molecular weight than predicted: IGSF3 typically appears at ~200 kDa despite a predicted size of 135.2 kDa , primarily due to extensive glycosylation . This size discrepancy is normal and expected.

  • Multiple bands: May indicate:

    • Detection of different isoforms (up to two reported for IGSF3)

    • Various post-translational modification states

    • Proteolytic degradation products

    • Non-specific binding

  • Unexpected band sizes: Could result from:

    • Alternative splicing variants

    • Protein degradation during sample preparation

    • Sample preparation conditions affecting protein migration

    • Cross-reactivity with related proteins

To properly interpret unexpected band patterns:

  • Compare to literature: Confirm if observed patterns match published IGSF3 Western blot results

  • Reduce protein degradation: Use fresh samples, work at 4°C, and include protease inhibitors

  • Optimize sample preparation: Pay special attention to non-reducing conditions, which appear critical for optimal IGSF3 detection

  • Validate with controls: Include positive control samples (human lung tissue) for comparison

  • Glycosidase treatment: Consider enzymatic deglycosylation to confirm glycosylation contribution to observed molecular weight

  • Epitope mapping: Determine if the antibody recognizes regions present in all potential isoforms or splice variants

Remember that IGSF3 is a membrane protein with extensive post-translational modifications, which can significantly impact its behavior in Western blot applications.

What strategies can address weak or inconsistent signal when using HRP-conjugated IGSF3 antibodies?

When encountering weak or inconsistent signals with HRP-conjugated IGSF3 antibodies, systematic troubleshooting can identify and resolve underlying issues:

  • Antibody concentration optimization:

    • Titrate antibody concentrations (try 1:500 - 1:5000 dilutions)

    • Increase antibody concentration if signal is too weak

    • Consider extended incubation times (overnight at 4°C)

  • Sample preparation refinement:

    • Ensure adequate protein loading (20-50 μg total protein for Western blot)

    • Verify protein integrity through Ponceau S staining

    • Use non-reducing conditions for Western blot applications

    • Optimize lysis buffer composition for membrane protein extraction

  • Detection system enhancement:

    • Use high-sensitivity HRP substrates (enhanced chemiluminescence)

    • Extend exposure times for Western blot or substrate incubation for ELISA

    • Consider signal amplification systems (biotin-streptavidin)

    • Ensure HRP activity has not been compromised during storage

  • Experimental conditions optimization:

    • Reduce washing stringency if signal is weak

    • Optimize blocking conditions to prevent over-blocking

    • Adjust incubation temperature (room temperature vs. 4°C)

    • Verify buffer compatibility with HRP activity

  • Antibody storage and handling:

    • Avoid repeated freeze-thaw cycles

    • Store according to manufacturer recommendations

    • Check for precipitation or contamination

    • Verify antibody hasn't exceeded recommended shelf life

If signal remains problematic after these optimizations, consider alternative antibody formats or detection methods, such as unconjugated primary antibodies with separate HRP-conjugated secondary antibodies for potential signal amplification.

How can cross-reactivity and background issues be addressed when working with IGSF3 antibodies?

Cross-reactivity and high background signal can compromise experimental results when working with HRP-conjugated IGSF3 antibodies. These issues can be addressed through several strategies:

  • Optimize blocking conditions:

    • Test different blocking agents (BSA, casein, commercial blockers)

    • Increase blocking time or concentration if background is high

    • Use the same blocking agent in antibody dilution buffer

  • Antibody dilution optimization:

    • Increase antibody dilution if background is high

    • Prepare antibody dilutions in fresh blocking buffer

    • Pre-absorb antibody with relevant tissues/cell lysates to reduce non-specific binding

  • Washing optimization:

    • Increase number of wash steps (5-6 washes instead of 3)

    • Extend wash durations (5-10 minutes per wash)

    • Adjust detergent concentration in wash buffers (0.05-0.1% Tween-20)

  • Reduce non-specific interactions:

    • Add 0.1-0.5% non-ionic detergent to antibody dilution buffer

    • Include 5% normal serum from the same species as samples

    • Consider adding 0.1-1% BSA to antibody dilution buffer

  • Validate specificity:

    • Test antibody on samples known to be negative for IGSF3

    • Perform peptide competition assays to confirm specific binding

    • Compare patterns across different applications and sample types

  • Control for endogenous peroxidase activity (for tissue samples):

    • Pre-treat samples with H₂O₂ to quench endogenous peroxidase

    • Use specific peroxidase blocking reagents before antibody incubation

Systematic optimization of these parameters can significantly improve signal-to-noise ratio and reduce cross-reactivity when working with HRP-conjugated IGSF3 antibodies.

What are the critical considerations for flow cytometry applications using IGSF3 antibodies?

While the HRP-conjugated IGSF3 antibody is primarily recommended for ELISA applications , researchers interested in flow cytometry should consider the following critical factors if exploring this application or when using alternative IGSF3 antibody formats:

  • Cell preparation optimization:

    • Ensure single-cell suspensions with high viability

    • Optimize fixation protocols to maintain epitope accessibility

    • Consider membrane permeabilization requirements based on epitope location

  • Antibody format selection:

    • For direct detection, fluorochrome-conjugated antibodies (e.g., Alexa Fluor® 488) are generally preferred over HRP-conjugated antibodies

    • If using HRP-conjugated antibodies, additional steps for peroxidase substrate development may be required

  • Controls for flow cytometry:

    • Include fluorescence-minus-one (FMO) controls

    • Use appropriate isotype controls at the same concentration as the primary antibody

    • Include known positive cells (e.g., A549 human lung carcinoma cells)

  • Staining protocol optimization:

    • Titrate antibody concentration to determine optimal signal-to-noise ratio

    • Optimize incubation time and temperature

    • Include washing steps to reduce background

  • Instrument setup and analysis:

    • Set appropriate voltage and compensation

    • Use proper gating strategies to identify IGSF3-positive populations

    • Consider co-staining with markers that define relevant cell subpopulations

Fluorescence values from flow cytometry experiments with A549 cells have demonstrated that IGSF3 is detectable on the cell surface , providing a useful positive control for validation studies. When establishing new flow cytometry protocols for IGSF3 detection, incremental optimization of each parameter will contribute to robust and reproducible results.

How can IGSF3 antibodies be utilized in studies investigating membrane protein complexes and interactions?

IGSF3, as a member of the immunoglobulin superfamily localized to the cell membrane , can be studied in the context of protein complexes and interactions using several approaches:

  • Co-immunoprecipitation (Co-IP):

    • Use IGSF3 antibodies to pull down IGSF3 and associated proteins

    • Western blot analysis can then identify interaction partners

    • Consider crosslinking approaches to stabilize transient interactions

    • Optimize lysis conditions to maintain membrane protein complexes

  • Proximity labeling approaches:

    • Combine IGSF3 antibodies with proximity labeling techniques (BioID, APEX)

    • This can identify proteins in close proximity to IGSF3 in living cells

  • Immunofluorescence co-localization:

    • Use fluorescent IGSF3 antibodies alongside antibodies against potential interaction partners

    • Confocal microscopy can assess spatial co-localization

    • Super-resolution techniques can provide higher precision for membrane protein organization

  • FRET/BRET analysis:

    • Combine fluorescently-labeled IGSF3 antibodies with antibodies against potential partners

    • Measure energy transfer to assess close molecular proximity

  • Membrane protein complex isolation:

    • Use detergent-resistant membrane isolation techniques

    • Antibody-based affinity purification of intact complexes

    • Blue native PAGE for analysis of intact complexes

  • Proteomic approaches:

    • Antibody-based purification followed by mass spectrometry

    • Cross-reference findings with predicted interaction networks

These approaches can provide insights into IGSF3's role in membrane organization, signaling complexes, and cellular communication pathways, particularly in tissues with high expression such as lung, placenta, and kidney .

What are the emerging applications for IGSF3 research in disease models and clinical studies?

IGSF3 research has potential implications in several disease contexts, particularly given its association with lacrimal duct defects . Researchers using IGSF3 antibodies in disease-related studies should consider:

  • Developmental disorders:

    • Investigation of IGSF3 expression in models of lacrimal duct development

    • Correlation of IGSF3 expression patterns with developmental abnormalities

    • Potential genetic screening for IGSF3 variants in relevant patient populations

  • Cancer research:

    • Analysis of IGSF3 expression in cancer tissues, particularly lung cancer given A549 cell line expression

    • Investigation of potential roles in tumor cell adhesion, migration, or signaling

    • Correlation with clinical outcomes or treatment responses

  • Immunological studies:

    • Examination of IGSF3's potential roles in immune cell interactions

    • Investigation of expression changes during inflammatory responses

    • Potential involvement in immune cell recruitment or activation

  • Tissue-specific pathologies:

    • Studies in placenta-related disorders given high placental expression

    • Investigation in kidney and lung disease models

    • Correlation with tissue-specific developmental abnormalities

  • Biomarker development:

    • Evaluation of IGSF3 as a potential biomarker in relevant disease contexts

    • Development of quantitative assays using HRP-conjugated antibodies

    • Correlation with disease progression or treatment response

Research in these emerging areas requires careful validation of antibody specificity in the particular disease model or tissue context. Researchers should consider combining antibody-based detection with genetic approaches (e.g., RNA-seq, genetic manipulation) to build comprehensive understanding of IGSF3's role in disease processes.

What best practices should researchers adopt when incorporating IGSF3 antibodies into their experimental workflows?

Researchers working with IGSF3 antibodies, particularly HRP-conjugated versions, should adopt these best practices to ensure robust and reproducible results:

  • Comprehensive validation: Validate antibody specificity through multiple approaches including Western blot, positive/negative controls, and when possible, genetic manipulation of IGSF3 expression.

  • Application-specific optimization: Optimize protocols specifically for each experimental application, recognizing that conditions optimal for ELISA may differ from those for Western blot or other techniques.

  • Appropriate controls: Include all necessary experimental controls, including isotype controls, blocking peptide controls, and positive/negative sample controls.

  • Documentation and reporting: Maintain detailed records of antibody specifications (catalog number, lot, concentration) and experimental conditions for reproducibility and transparent reporting in publications.

  • Sample preparation considerations: Pay special attention to membrane protein extraction methods and non-reducing conditions for Western blot applications .

  • Isoform awareness: Consider the impact of IGSF3 isoforms and post-translational modifications on experimental results and interpretations.

  • Cross-validation: When possible, confirm key findings using alternative antibodies targeting different IGSF3 epitopes or orthogonal detection methods.

  • Storage and handling: Follow manufacturer recommendations for antibody storage, handling, and working dilution preparation to maintain antibody performance over time.

By implementing these best practices, researchers can maximize the scientific value of experiments using IGSF3 antibodies while ensuring reliability and reproducibility of their findings.

How can researchers effectively troubleshoot and optimize experiments using HRP-conjugated IGSF3 antibodies?

Effective troubleshooting requires a systematic approach to identify and address factors affecting experimental outcomes. For HRP-conjugated IGSF3 antibodies, consider this structured optimization process:

  • Establish baseline performance:

    • Begin with established positive controls (human lung tissue, A549 cells)

    • Use manufacturer-recommended protocols as starting points

    • Document initial results thoroughly as reference points

  • Systematic parameter optimization:

    • Modify one variable at a time (antibody concentration, incubation time, etc.)

    • Document the effect of each change on signal and background

    • Build an optimization matrix to identify optimal conditions

  • Sample-specific adjustments:

    • Adapt protocols for specific sample types (cell lines vs. tissues)

    • Optimize lysis and extraction methods for membrane proteins

    • Consider sample-specific interfering factors

  • Signal development optimization:

    • Test different HRP substrates for optimal sensitivity

    • Optimize substrate incubation time and concentration

    • Determine linear range of detection for quantitative applications

  • Application-specific considerations:

    • For ELISA: Focus on coating, blocking, and wash optimization

    • For Western blot: Pay special attention to non-reducing conditions

    • For other applications: Consider alternative antibody formats if needed

  • Documentation and standardization:

    • Create detailed protocols capturing all optimized parameters

    • Standardize positive controls across experiments

    • Establish acceptance criteria for experimental validity

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