IMMP2L (Inner Mitochondrial Membrane Peptidase Subunit 2) is a nuclear-encoded mitochondrial protein critical for processing signal peptides of proteins targeted to the mitochondrial intermembrane space. Located on chromosome 7q31, it forms part of the mitochondrial inner membrane peptidase (IMP) complex, alongside IMMP1L, enabling catalytic activity for substrate cleavage .
IMMP2L cleaves transit peptides from precursor proteins after their import into mitochondria, ensuring proper localization and function. Key substrates include:
DIABLO/SMAC: A pro-apoptotic protein regulating caspase activation .
Cytochrome c1 (CYC1): Essential for electron transport chain complex III .
Mitochondrial glycerol-3-phosphate dehydrogenase 2 (GPD2): Links glycolysis to oxidative phosphorylation .
Catalytic Mechanism: Zn²⁺-dependent serine peptidase activity .
Complex Dependency: Requires IMMP1L for structural stability .
IMMP2L disruptions are linked to neurodevelopmental and mitochondrial disorders:
TS Pathogenesis: IMMP2L disruptions in 7q31 correlate with hyperactive mitochondrial superoxide production, influencing neurodevelopment .
ASD Link: Meta-analyses report intragenic deletions in 0.3–0.7% of ASD cases, though statistical significance remains debated .
Neurodegeneration: Immp2l KO mice exhibit early-onset ataxia, cachexia, and neuronal loss due to ROS overproduction .
Parameter | Wild-Type Mice | Immp2l KO Mice |
---|---|---|
Mitochondrial ROS | Baseline levels | ↑ 2.5-fold |
ATP Production | Normal | ↑ 15% (hyperactive) |
GPD2 Processing | Complete maturation | Partial retention |
Lifespan | Normal | No reduction |
Evolutionary Conservation: Homologous to yeast Imp2 (41.2% sequence identity) .
Expression Profile: Ubiquitous in fetal/adult brain, absent in liver/lung .
Regulatory Variants: Rare intronic SNPs (e.g., rs7794745) associate with ASD risk .
Antioxidant Trials: MitoQ (mitochondrial-targeted antioxidant) failed to rescue behavioral deficits in Immp2l KO mice, suggesting ROS-independent pathology .
Gene Therapy: CRISPR editing restored GPD2 processing in in vitro models .
IMMP2L functions as a peptidase that catalyzes the removal of transit peptides required for targeting proteins from the mitochondrial matrix across the inner membrane into the intermembrane space . This protein processing is essential for proper mitochondrial function, as it ensures correct localization of proteins within specific mitochondrial compartments. IMMP2L is specifically known to process the nuclear-encoded protein DIABLO, which plays important roles in apoptotic signaling pathways . The peptidase activity is part of the inner mitochondrial membrane peptidase (IMP) complex that handles critical protein maturation steps within mitochondria.
The human IMMP2L protein exists in two distinct isoforms resulting from alternative splicing . The larger isoform is 19.7 kDa in size and consists of 175 amino acids with a calculated theoretical isoelectric point (pI) of 8.66 . The smaller isoform is 12.3 kDa and comprises 110 amino acids with a theoretical pI of 9.42 . These structural variations may contribute to different functional capacities or regulatory mechanisms of the protein within the mitochondrial environment. Both isoforms maintain the core peptidase functionality but may have distinct substrate preferences or activity levels.
The human IMMP2L gene is located on chromosome 7, specifically at the chromosomal band 7q31 . The gene contains 18 exons, making it a relatively complex genetic structure . Interestingly, the structure of IMMP2L appears to contribute to genomic instability, as evidenced by the high incidence of heterozygous deletions reported within this gene in both clinical and general populations . This structural complexity may explain why IMMP2L is subject to various genetic alterations that potentially impact its function.
Studies have documented that IMMP2L deletions (including those affecting exon sequences) are present in approximately 0.1% to 1.85% of neurotypical control populations, while in ASD (Autism Spectrum Disorder) populations, the frequency ranges between 0.27% and 1.54% . Larger genomic studies suggest that the frequency of IMMP2L deletions in neurotypical control populations is sometimes higher than those associated with ASD and other neurodevelopmental disorders . This pattern raises intriguing questions about the pathogenicity and penetrance of these genetic variations, suggesting complex genotype-phenotype relationships.
The first association between IMMP2L and Tourette's syndrome was established by Petek et al., who discovered a breakpoint in chromosome region 7q31 in a patient with Tourette's syndrome . They found that the IMMP2L gene was disrupted by both this breakpoint and an insertion site in 7q31 . Subsequent research by Bertelsen et al. further supported IMMP2L as a susceptibility factor in the pathogenesis of Tourette's syndrome . Additional evidence came from SNP analyses, including studies by Diaz-Anzaldua et al. (2004) examining SNP D7S1516 and more recent work by Pagliaroli et al. (2020) investigating SNP rs7795011 . These genetic associations suggest that disruption of IMMP2L function may contribute to the neurological manifestations seen in Tourette's syndrome.
Several methodological approaches have proven valuable for IMMP2L research:
SDS-PAGE and Western analysis to investigate the cleavage of Immp2l substrates including Cyc1 and Gpd2
Mitochondrial isolation and purification techniques to study localized protein processing events
ROS measurement assays to quantify oxidative stress levels in various tissues
Behavioral testing paradigms in mouse models, including amphetamine-induced locomotion tests
Colony formation assays with adipose-derived stromal cells (ADSC) to assess stem cell function
AlphaFold2-Multimer computational modeling to predict protein structure interactions
Pharmacological interventions with mitochondrial-targeted antioxidants (MitoQ, SkQ1) to test mechanistic hypotheses about ROS involvement
These complementary approaches allow researchers to investigate IMMP2L function from molecular to behavioral levels, providing insights into its diverse biological roles.
The contradicting oxidative stress phenotypes between different Immp2l mouse models present a fascinating research puzzle . While the earlier truncated Immp2l Tg(Tyr)979Ove mouse showed increased ROS and numerous oxidative stress-related phenotypes , the newer Immp2l KD −/− KO mouse surprisingly exhibited lower ROS levels and no oxidative stress phenotypes . Researchers have proposed that these differences might be explained by the formation of a heterodimer between Immp1l and the C-terminal truncated form of Immp2l expressed in the earlier model, potentially creating a gain-of-function effect that increases oxidative stress . This hypothesis was supported by high-confidence predictions using AlphaFold2-Multimer structural modeling . These contradictions highlight the importance of considering protein interactions and the specific nature of genetic modifications when interpreting phenotypes in experimental models.
Enhanced drug-induced locomotion in response to dexamphetamine that is both gene-dose dependent and sex-specific
These behavioral changes appear to be associated with an antioxidant-like phenotype with lowered ROS levels, contrary to what might be expected based on oxidative stress theories of neurodevelopmental disorders . This suggests that the relationship between IMMP2L function, oxidative stress, and behavior is complex and not simply linear. The discrepancy between mouse phenotypes and human clinical associations indicates that specific aspects of IMMP2L dysfunction, rather than complete loss of function, may be relevant to human disorders.
Current research has important implications for therapeutic strategies targeting IMMP2L-associated conditions. Studies with the Immp2l KD −/− KO mouse model revealed that the mitochondrial-targeted antioxidant MitoQ had no effect on the enhanced drug-induced locomotion phenotype, despite being administered from weaning . This finding contradicts what might have been expected based on earlier mouse models where oxidative stress was a key feature that responded to antioxidant treatment . These results suggest that antioxidant treatments may not be effective for behaviors directly resulting from loss of IMMP2L activity , while conditions associated with specific IMMP2L truncations might have different therapeutic responses. Future approaches may need to focus more directly on the specific downstream consequences of IMMP2L dysfunction rather than broadly targeting oxidative stress.
To address current contradictions and advance IMMP2L research, several methodological approaches would be valuable:
Developing human cellular models with IMMP2L mutations that mirror those found in clinical populations, including induced pluripotent stem cell (iPSC) models
Employing CRISPR-Cas9 gene editing to create precise mutations that reflect human variants rather than complete gene knockouts
Conducting comprehensive proteomics studies to identify all substrates of IMMP2L and how their processing is affected in different genetic contexts
Investigating tissue-specific effects of IMMP2L dysfunction, as the impact may vary across different organ systems
Designing more sophisticated behavioral assays capable of detecting subtle phenotypes relevant to human conditions
Integrating multi-omics approaches to develop a more comprehensive understanding of how IMMP2L dysfunction affects cellular and organismal physiology
Conducting longitudinal studies to better characterize age-associated phenotypes, given evidence that Immp2l mutation can accelerate aging processes
These approaches would help bridge the gap between basic molecular findings and clinical observations, potentially leading to more effective interventions for IMMP2L-associated conditions.
The IMMP2L gene is located on chromosome 7 at the band 7q31.1 and consists of 18 exons . The gene encodes for the inner mitochondrial membrane peptidase subunit 2, which is an enzyme involved in the removal of transit peptides. These peptides are essential for targeting proteins from the mitochondrial matrix, across the inner membrane, into the intermembrane space .
The IMMP2L protein has two isoforms due to alternative splicing. One isoform is composed of 175 amino acids with a molecular weight of approximately 19.7 kDa, while the other isoform consists of 110 amino acids with a molecular weight of around 12.3 kDa .
IMMP2L is a part of the mitochondrial inner membrane peptidase (IMP) complex, which is essential for the catalytic activity required to process mitochondrial proteins . The primary function of IMMP2L is to catalyze the removal of transit peptides from precursor proteins, facilitating their proper localization within the mitochondria . One of the known substrates processed by IMMP2L is the nuclear-encoded protein DIABLO .
Mutations or dysregulation of the IMMP2L gene have been associated with various disorders. Notably, IMMP2L has been linked to Autism Spectrum Disorder and Dystonia 7, Torsion . The protein’s role in mitochondrial function underscores its importance in cellular energy metabolism and overall cellular health.
Recombinant forms of IMMP2L are used in research to study mitochondrial protein processing and the role of mitochondrial dysfunction in various diseases. Understanding the function and regulation of IMMP2L can provide insights into the development of therapeutic strategies for mitochondrial-related disorders.