IVNS1ABP (Influenza Virus NS1A Binding Protein) is a 642 amino acid protein that interacts with the influenza A virus nonstructural NS1 protein and plays crucial roles in cellular integrity. The protein localizes to both the nucleus and cytoplasm and contains specialized domains—including one BACK domain, one BTB (POZ) domain, and six Kelch repeats—that contribute to its structural stability and functional versatility . IVNS1ABP's significance stems from its multifunctional role in:
Maintaining dynamic organization of the actin cytoskeleton by stabilizing actin filaments through association with F-actin via its Kelch repeats
Activating ERK signaling pathways and providing neuroprotective effects by safeguarding dendritic spines
Association with cardiovascular diseases such as acute myocardial infarction
These diverse functions make IVNS1ABP antibodies valuable tools for investigating cytoskeletal dynamics, viral-host interactions, and disease mechanisms.
IVNS1ABP antibodies are available in several configurations to suit different experimental needs:
The choice between monoclonal and polyclonal antibodies depends on your experimental goals: monoclonal antibodies offer high specificity to a single epitope with consistent performance across batches, while polyclonal antibodies recognize multiple epitopes, potentially providing stronger signals but with higher batch-to-batch variation.
Methodological validation of IVNS1ABP antibodies should follow a multi-step approach:
Positive and negative controls: Use tissues or cell lines with known IVNS1ABP expression levels. HEK293 cells typically express IVNS1ABP and can serve as positive controls.
Knockdown/knockout verification: Compare antibody signals between wild-type samples and those with IVNS1ABP knockdown (using siRNA) or knockout to confirm specificity.
Cross-reactivity assessment: Test antibody against purified recombinant IVNS1ABP protein alongside other structural homologs with Kelch repeat domains.
Application-specific validation:
For Western blot: Verify the molecular weight (approximately 70-72 kDa for human IVNS1ABP)
For immunofluorescence: Compare with known subcellular localization patterns (both nuclear and cytoplasmic)
For immunoprecipitation: Confirm using mass spectrometry of pulled-down proteins
Lot-to-lot consistency testing: When obtaining new lots of the same antibody, perform parallel experiments with previous lots to ensure consistent performance.
This systematic validation approach reduces the risk of experimental artifacts and improves reproducibility in IVNS1ABP research.
Western blotting with IVNS1ABP antibodies requires specific optimization:
Recommended Protocol:
Sample preparation:
Use RIPA buffer with protease inhibitors
Include phosphatase inhibitors if studying phosphorylation status
Denature samples at 95°C for 5 minutes in Laemmli buffer
Gel electrophoresis:
8-10% SDS-PAGE gels work best for resolving IVNS1ABP (~70-72 kDa)
Load 20-40 μg of total protein per lane
Transfer conditions:
Semi-dry transfer: 15V for 45 minutes
Wet transfer: 100V for 60 minutes at 4°C
Blocking:
5% non-fat dry milk in TBST for 1 hour at room temperature
For phospho-specific detection, use 5% BSA in TBST
Primary antibody incubation:
Signal detection troubleshooting:
If signal is weak: Increase antibody concentration or extend incubation time
If background is high: Increase washing steps or reduce antibody concentration
The expected band should appear at approximately 70-72 kDa, with possible additional bands if detecting specific isoforms or post-translational modifications.
For optimal immunofluorescence (IF) results with IVNS1ABP antibodies:
Methodological Approach:
Cell preparation:
Fix cells with 4% paraformaldehyde for 15 minutes at room temperature
For nuclear epitopes, permeabilize with 0.2% Triton X-100 for 10 minutes
Blocking:
5% normal serum (matching secondary antibody host) with 0.3% Triton X-100 for 1 hour
Antibody dilutions:
Controls and co-staining recommendations:
Include F-actin staining (phalloidin) to examine colocalization with actin cytoskeleton
Use nuclear counterstain (DAPI/Hoechst) to verify nuclear localization
For viral studies, co-stain with influenza NS1 protein antibodies
Expected pattern:
Normal cells: Both nuclear and cytoplasmic localization
Influenza-infected cells: Often shows redistribution with NS1 protein
Advanced application: For live-cell imaging, consider using the fluorescently conjugated versions of G-9 antibody (FITC or Alexa Fluor® conjugates)
Being aware that IVNS1ABP's localization may change under different cellular conditions, particularly during viral infection or stress responses, is crucial for proper interpretation of results.
Co-immunoprecipitation (Co-IP) with IVNS1ABP antibodies requires careful optimization:
Methodological Considerations:
Lysis buffer selection:
For cytoskeletal interactions: Use mild NP-40 buffer (1% NP-40, 150mM NaCl, 50mM Tris pH 8.0)
For nuclear interactions: Include 0.1% SDS or 0.5% sodium deoxycholate
Always include protease/phosphatase inhibitors
Antibody selection:
Pre-clearing step:
Pre-clear lysates with Protein A/G beads for 1 hour at 4°C to reduce non-specific binding
Controls:
IgG control of the same isotype as the IP antibody
Input sample (5-10% of protein used for IP)
When studying virus interactions, include both infected and uninfected controls
Washing conditions:
Use at least 4-5 washes with decreasing salt concentrations
Final wash should be in PBS to remove detergents
Elution and detection:
For gentle elution: Use competing peptide if available
For denaturing elution: 0.1M glycine (pH 2.5) or SDS sample buffer
Expected interaction partners:
F-actin and cytoskeletal components
Influenza NS1 protein (in infected samples)
Components of the pre-mRNA splicing machinery
The success of Co-IP experiments depends significantly on preserving the native protein-protein interactions while minimizing non-specific binding.
IVNS1ABP antibodies can provide valuable insights into viral infection mechanisms:
Methodological Approach:
Time-course infection studies:
Infect cells with influenza virus (MOI 1-5)
Collect samples at 0, 2, 4, 8, 12, and 24 hours post-infection
Use IVNS1ABP antibodies in immunoblotting and immunofluorescence to track localization changes
Co-localization analysis:
Perform dual staining with IVNS1ABP and influenza NS1 antibodies
Quantify co-localization using Pearson's correlation coefficient or Mander's overlap coefficient
Compare these metrics between different viral strains or mutants
Functional inhibition experiments:
Transfect cells with IVNS1ABP-targeting siRNA (verify knockdown with IVNS1ABP antibodies)
Measure viral replication efficiency using plaque assays or qPCR
Compare viral protein expression patterns using Western blot
Protein complex identification:
Use IVNS1ABP antibodies for immunoprecipitation followed by mass spectrometry
Compare protein interaction networks between mock and infected conditions
Validate key interactions with reciprocal co-IP experiments
Post-translational modification analysis:
Examine changes in IVNS1ABP phosphorylation status during infection
Use phospho-specific antibodies or phospho-enrichment followed by IVNS1ABP immunoblotting
These approaches help elucidate the dynamic interplay between viral components and IVNS1ABP during infection, potentially revealing targets for antiviral intervention.
Recent research has identified IVNS1ABP as relevant in inflammation and cardiovascular disease :
Research Methodology:
Animal models:
Gene modulation approaches:
Macrophage-specific studies:
Isolate macrophages and modify Ivns1abp expression ex vivo
Perform adoptive transfer into animal models
Monitor inflammatory markers and tissue damage
Cardiovascular assessment:
Pathway analysis:
The combined odds ratio data from recent studies suggests IVNS1ABP is a risk factor for AMI (OR = 1.047, 95% CI: 1.000–1.096, P = 0.048) , highlighting its potential value as a biomarker in cardiovascular research.
When faced with contradictory IVNS1ABP antibody results:
Systematic Troubleshooting Approach:
Antibody epitope mapping:
Expression level variations:
Quantify baseline IVNS1ABP expression across cell lines/tissues using qPCR
Normalize Western blot signals to total protein rather than housekeeping genes
Consider creating standard curves with recombinant IVNS1ABP
Isoform-specific detection:
Verify which isoforms your antibody detects
Use RT-PCR to determine which isoforms are expressed in your model system
Post-translational modifications:
Test whether phosphorylation affects antibody recognition
Consider phosphatase treatment of samples prior to immunoblotting
Verify if ubiquitination or other modifications alter detection
Protocol harmonization:
Standardize fixation conditions for immunostaining (methanol vs. paraformaldehyde)
Use consistent lysis buffers and denaturation conditions for Western blotting
Document detailed protocols to facilitate comparison between experiments
Meta-analysis approach:
Create a systematic table of experimental conditions, antibody used, and results
Identify patterns in contradictory results to generate testable hypotheses
Consider collaborative validation across different laboratories
This methodical approach helps distinguish genuine biological variation from technical artifacts in IVNS1ABP research.
IVNS1ABP antibodies can drive research into therapeutic targets:
Research Strategies:
Structure-function relationship studies:
Use domain-specific IVNS1ABP antibodies to identify critical regions for NS1-binding
Develop competitive peptides that disrupt IVNS1ABP-NS1 interaction
Screen for small molecules that mimic these interactions
Signaling pathway elucidation:
Map IVNS1ABP's role in ERK signaling pathway using phospho-specific antibodies
Identify druggable nodes in these pathways using IVNS1ABP antibodies for verification
Study cross-talk between IVNS1ABP and interferon response pathways
Biomarker development:
Quantify IVNS1ABP levels during infection progression using standardized immunoassays
Correlate with disease severity and treatment response
Develop point-of-care diagnostic tools based on these findings
Therapeutic modulation strategies:
Target IVNS1ABP expression using antisense oligonucleotides
Evaluate effect on viral replication using IVNS1ABP antibodies to monitor knockdown
Combine with existing antivirals to assess synergistic effects
Broad-spectrum antiviral potential:
Investigate IVNS1ABP interaction with other viral proteins beyond influenza
Use antibodies to compare binding patterns across virus families
Identify conserved interaction motifs as targets for broad-spectrum antivirals
By systematically exploring these areas, researchers can develop novel therapeutic strategies that target host-pathogen interactions rather than viral components alone, potentially reducing the risk of resistance development.
Advanced methodologies for studying IVNS1ABP's cytoskeletal functions:
Technical Approaches:
Live-cell imaging:
Generate IVNS1ABP-GFP fusion constructs (validate with antibodies)
Perform FRAP (Fluorescence Recovery After Photobleaching) to measure dynamics
Use TIRF microscopy to visualize interactions with cortical actin
Super-resolution microscopy:
Employ STORM or STED imaging with IVNS1ABP antibodies
Co-stain with actin markers to visualize nanoscale organization
Quantify colocalization at single-molecule resolution
Proximity ligation assays (PLA):
Use IVNS1ABP antibodies paired with actin or other cytoskeletal protein antibodies
Visualize direct interactions in situ
Quantify interaction changes during cell migration or division
Functional migration assays:
Perform wound healing assays with IVNS1ABP knockdown/overexpression
Use Transwell or microfluidic migration assays
Quantify migration parameters while monitoring IVNS1ABP localization
Mechanical force measurements:
Use traction force microscopy while modulating IVNS1ABP levels
Measure cellular stiffness using atomic force microscopy
Correlate mechanical properties with IVNS1ABP distribution (verified by antibodies)
Biomechanical modeling:
Develop mathematical models of IVNS1ABP-actin interactions
Validate predictions using quantitative immunofluorescence
Simulate effects of IVNS1ABP mutations on cytoskeletal dynamics
These techniques together provide a comprehensive understanding of IVNS1ABP's role in cytoskeletal organization and cell motility, with implications for both normal cellular function and disease states.
Integrating quantitative proteomics with antibody-based techniques:
Methodological Framework:
Immunoprecipitation-Mass Spectrometry (IP-MS):
Use IVNS1ABP antibodies to pull down protein complexes
Perform label-free quantification of interacting partners
Compare interactomes under different conditions (e.g., viral infection, stress)
Proximity-dependent labeling:
Create IVNS1ABP-BioID or APEX2 fusion proteins
Validate fusion protein localization using IVNS1ABP antibodies
Identify proximal proteins through streptavidin pulldown and mass spectrometry
Cross-linking Mass Spectrometry (XL-MS):
Cross-link protein complexes containing IVNS1ABP
Enrich using IVNS1ABP antibodies
Identify direct binding interfaces through cross-linked peptide analysis
Absolute quantification:
Develop AQUA peptides for IVNS1ABP
Use targeted proteomics (PRM/MRM) to quantify IVNS1ABP across samples
Correlate with antibody-based quantification methods
Post-translational modification mapping:
Enrich IVNS1ABP using antibodies
Perform phosphoproteomics, ubiquitylomics, or acetylomics
Create modification-specific antibodies based on identified sites
Spatial proteomics integration:
Combine IVNS1ABP immunofluorescence with laser capture microdissection
Perform proteomics on specific subcellular regions
Create spatial maps of IVNS1ABP-associated protein networks
This integrated approach provides deeper insights into IVNS1ABP function than either technique alone, offering both candidate discovery through proteomics and targeted validation using antibodies.
Common challenges and solutions in IVNS1ABP antibody applications:
Systematic Troubleshooting Guide:
Non-specific binding issues:
Problem: Multiple unexpected bands in Western blot
Solution: Increase blocking time (2 hours), use gradient gel to better resolve bands, validate with IVNS1ABP knockdown controls
Poor signal-to-noise ratio:
Problem: High background in immunofluorescence
Solution: Optimize antibody concentration through titration, increase washing steps, use phosphate-free buffer for G-9 antibody
Epitope masking:
Problem: Inconsistent detection in different sample preparations
Solution: Compare multiple fixation methods, try antigen retrieval techniques, test different antibodies targeting distinct epitopes
Batch-to-batch variation:
Problem: Performance differences between antibody lots
Solution: Maintain reference samples for validation, normalize to positive controls, consider monoclonal antibodies for critical applications
Cross-reactivity concerns:
Problem: Signal in presumed negative samples
Solution: Validate with recombinant protein panels, perform peptide competition assays, confirm with orthogonal detection methods
Protocol optimization decision tree:
For weak signal: Increase antibody concentration → Extend incubation time → Try different detection system
For high background: Increase blocking time → Use more stringent washing → Reduce antibody concentration
Maintaining detailed laboratory records of antibody performance across different applications helps identify optimal conditions and troubleshoot emerging issues consistently.
Comprehensive evaluation framework for IVNS1ABP antibodies:
Systematic Comparison Methodology:
Performance metrics table:
| Metric | Evaluation Method | Acceptance Criteria |
|---|---|---|
| Specificity | Western blot of KO/KD samples | Single band at 70-72 kDa; >80% signal reduction in KD |
| Sensitivity | Limit of detection analysis | Detect <10ng recombinant protein |
| Reproducibility | CV% across technical replicates | CV <15% |
| Application versatility | Testing in multiple applications | Successful in ≥3 applications |
| Species cross-reactivity | Testing on multi-species samples | Consistent detection across claimed species |
Validation experimental design:
Side-by-side testing of multiple antibodies on identical samples
Include positive and negative controls for each application
Randomize and blind sample analysis to prevent bias
Perform at least three independent replicates
Documentation standards:
Record complete antibody information (catalog number, lot, dilution)
Document detailed protocols including all buffer compositions
Maintain unedited original images alongside analyzed data
Report both successful and failed experiments
Collaborative validation strategies:
Implement multi-laboratory testing of the same antibody
Use standardized samples distributed across sites
Analyze results with consistent statistical methods
Decision-making framework:
For research continuity: Prioritize reproducibility over absolute sensitivity
For novel applications: Select antibodies with most relevant epitope
For quantitative analysis: Choose antibodies with linear response range
This methodical evaluation approach ensures selection of optimal IVNS1ABP antibodies for specific research applications while promoting transparency and reproducibility.
Advanced detection strategies for challenging samples:
Technical Approaches:
Sample enrichment methods:
Subcellular fractionation to concentrate IVNS1ABP-rich compartments
Immunoprecipitation followed by Western blotting (IP-WB)
Phospho-protein enrichment if targeting phosphorylated IVNS1ABP forms
Signal amplification techniques:
Tyramide signal amplification (TSA) for immunohistochemistry
Proximity ligation assay (PLA) for detecting IVNS1ABP interactions
Polymer-based detection systems for enhanced sensitivity
Alternative detection platforms:
Single-molecule immunofluorescence
Capillary Western immunoassay (Wes/Jess systems)
Flow cytometry with intracellular staining
Protocol modifications for challenging samples:
For fixed tissues: Extended antigen retrieval (citrate buffer pH 6.0, 20 min)
For blood samples: Red blood cell lysis followed by white blood cell enrichment
For brain tissues: Special fixation protocols to preserve cytoskeletal elements
Quantification approaches:
Digital pathology with automated image analysis
Droplet digital PCR (ddPCR) paired with antibody validation
Mass cytometry (CyTOF) for single-cell protein quantification
Standardization methods:
Include recombinant IVNS1ABP standard curve in each experiment
Use validated reference samples with known IVNS1ABP levels
Normalize to total protein rather than single housekeeping proteins
These approaches significantly enhance detection sensitivity and specificity for IVNS1ABP in tissues with naturally low expression or in conditions where protein levels are pathologically reduced.
Current research methodologies for IVNS1ABP as an AMI biomarker:
Research Approaches:
Clinical validation studies:
Mechanistic investigation techniques:
Use IVNS1ABP antibodies to study expression in cardiac tissue samples
Examine relationship to platelet activation pathways
Investigate connections to hyperlipidemia and lipophagy processes
Mendelian randomization approaches:
Biomarker panel development:
Develop standardized immunoassays for clinical settings
Create reference intervals across different populations
Validate in prospective studies with diverse AMI presentations
Therapeutic target assessment:
Screen compounds that modulate IVNS1ABP expression or function
Evaluate effects on experimental AMI models
Monitor IVNS1ABP levels as pharmacodynamic markers
The emergence of IVNS1ABP as a biomarker represents a promising avenue for improving AMI diagnosis and prognostication, particularly when integrated with other established and novel biomarkers.
Research strategies for investigating IVNS1ABP in inflammation:
Methodological Framework:
Macrophage-specific studies:
Recent research shows modulation of Ivns1abp gene in macrophages can modify resistance against inflammation
Use ex vivo–modified macrophages overexpressing Ivns1abp to study adoptive transfer effects in inflammatory models
Apply IVNS1ABP antibodies to track protein expression and localization during inflammatory responses
Signal transduction analysis:
Examine IVNS1ABP's role in inflammatory signaling cascades
Investigate interaction with NF-κB pathway components
Study phosphorylation status during activation of immune cells
Transcriptomic integration:
Correlate IVNS1ABP protein levels (detected by antibodies) with:
Inflammatory gene expression profiles
Cytokine production patterns
Response to anti-inflammatory treatments
Tissue-specific inflammation models:
Cross-disciplinary approaches:
Integrate findings with research on IVNS1ABP's viral interaction functions
Explore potential overlap between antiviral and anti-inflammatory roles
Develop unified mechanistic models of IVNS1ABP function
These investigations may reveal IVNS1ABP as a critical regulatory node connecting viral infection responses with broader inflammatory pathways, potentially offering novel therapeutic targets for inflammatory conditions.
Emerging antibody technologies for IVNS1ABP research:
Advanced Technological Approaches:
Single-domain antibodies (nanobodies):
Develop camelid-derived nanobodies against specific IVNS1ABP domains
Use for intracellular tracking in living cells
Apply in structural studies due to small size and stability
Conformation-specific antibodies:
Generate antibodies that recognize specific IVNS1ABP conformational states
Distinguish between monomeric and dimeric forms
Map dynamic structural changes during protein-protein interactions
Antibody-fragment crystallography:
Use Fab fragments to facilitate IVNS1ABP crystallization
Determine high-resolution structures of specific domains
Identify critical binding interfaces with viral proteins
CRISPR-based antibody validation:
Generate precise IVNS1ABP domain deletions or mutations
Test antibody specificity against modified protein variants
Create comprehensive epitope maps for available antibodies
Intrabodies for functional perturbation:
Express antibody fragments intracellularly to block specific domains
Target BTB dimerization domain or Kelch repeats separately
Dissect domain-specific functions without altering expression levels
Cutting-edge applications:
IVNS1ABP interactome mapping using proximity-dependent biotinylation
Single-molecule tracking of IVNS1ABP dynamics during viral infection
Optogenetic control of IVNS1ABP cellular localization
These new antibody technologies provide unprecedented opportunities to understand the complex structural dynamics of IVNS1ABP and their functional implications in both normal cellular processes and disease states.