LSB3 Antibody

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Description

Introduction to LSB3 Antibody

The LSB3 antibody is a specialized immunological tool targeting the LSB3 protein, a conserved SH3 domain-containing protein in Saccharomyces cerevisiae. LSB3 (Yfr024c-a) is a homolog of Ysc84p, with roles in actin cytoskeleton organization and endocytosis . Antibodies against LSB3 are primarily used in research to study its molecular interactions, cellular localization, and functional contributions to yeast physiology.

Table 1: Comparison of YSC84 and LSB3 Genes

FeatureYSC84LSB3
Intron positionNucleotides 47–217Nucleotides 53–171
Intron length169 nucleotides118 nucleotides
Protein homology91% (N-terminal)86% (SH3 domain)

Functional Role of LSB3

LSB3 interacts with Sla1p, a yeast protein involved in actin patch dynamics and endocytosis. Key findings include:

  • Two-hybrid interaction: The C-terminal SH3 domain of LSB3 binds Sla1p’s Gap1 region (amino acids 118–511) .

  • Actin cytoskeleton regulation: LSB3 localizes to cortical actin patches, requiring Abp1p and Las17p/Bee1p for proper localization .

  • Conservation: Homologs exist in Schizosaccharomyces pombe, mice, and humans, suggesting evolutionary significance .

4.1. Experimental Validation

  • Immunoprecipitation: GST-Sla1(118–511) fusion proteins bind LSB3-myc in yeast extracts .

  • Localization studies: LSB3 antibodies detect cortical actin-associated complexes via fluorescence microscopy .

4.2. Key Findings Using LSB3 Antibodies

  1. Interaction with Sla1p: Biochemical assays confirm LSB3’s SH3 domain mediates binding to Sla1p, independent of Sla1p’s third SH3 domain .

  2. B1 cell memory in LG3 studies: While unrelated to LSB3, techniques like ELISpot (used in anti-LG3 antibody research ) highlight methodologies applicable to LSB3 analysis.

Technical Considerations

  • Antibody specificity: Epitope mapping is critical due to high homology between LSB3 and Ysc84p .

  • Experimental systems: Studies often use S. cerevisiae knockout strains (e.g., abp1Δ, las17Δ) to dissect LSB3’s actin-related functions .

Future Directions

  • Structural studies: High-resolution crystallography of LSB3-Sla1p complexes.

  • Cross-species analysis: Investigating LSB3 homologs in mammalian endocytic pathways.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Composition: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
LSB3 antibody; SCY_1771 antibody; LAS seventeen-binding protein 3 antibody; LAS17-binding protein 3 antibody
Target Names
LSB3
Uniprot No.

Target Background

Protein Families
SH3YL1 family
Subcellular Location
Cytoplasm.

Q&A

What is LAG-3 and why is it significant in immunology research?

LAG-3 (Lymphocyte-activated gene 3, also known as CD223) is a cell surface inhibitory receptor that functions as a key regulator of immune homeostasis with multiple biological activities related to T-cell functions. Its significance stems from being considered a next-generation immune checkpoint of clinical importance, positioned right after programmed cell death protein 1 (PD-1) and cytotoxic T-cell lymphocyte antigen-4 (CTLA-4) in the development pipeline of immunotherapeutics. It represents the third inhibitory receptor to be exploited in human anticancer immunotherapies, making it a crucial target for research focused on overcoming immunotherapy resistance .

How does LAG-3 function in the immune system?

LAG-3 functions as an inhibitory receptor on antigen-activated T-cells that delivers inhibitory signals upon binding to its ligands, including FGL1. Following T-cell receptor (TCR) engagement, LAG-3 associates with CD3-TCR in the immunological synapse and directly inhibits T-cell activation. It negatively regulates the proliferation, activation, effector function, and homeostasis of both CD8+ and CD4+ T-cells. Additionally, LAG-3 mediates immune tolerance by being constitutively expressed on a subset of regulatory T-cells (Tregs) and contributing to their suppressive function. It also acts as a negative regulator of plasmacytoid dendritic cell activation .

What are the most commonly used formats of LAG-3 antibodies in research?

LAG-3 antibodies are available in various formats including mouse monoclonal, rabbit monoclonal, and recombinant antibodies. These include:

  • Mouse monoclonal antibodies (such as clone 11E3)

  • Rabbit recombinant monoclonal antibodies (such as clone EPR20261)

  • Humanized IgG4 monoclonal antibodies (such as TSR-033)

  • Bispecific antibodies targeting both LAG-3 and other immune checkpoints (such as IBI323 targeting both PD-L1 and LAG-3)

These antibodies can come with different conjugations (including Alexa Fluor® 532) and are optimized for various applications including Western blot, immunohistochemistry, flow cytometry, ELISA, and immunoprecipitation .

How should researchers validate the specificity of LAG-3 antibodies before experimental use?

Researchers should employ multiple complementary strategies to validate LAG-3 antibody specificity:

  • PTM Specificity Testing: If applicable, use modified and unmodified peptide arrays to confirm antibody specificity for particular post-translational modifications.

  • ELISA Validation: Perform competitive binding assays to verify binding specificity.

  • Peptide Competition: Use blocking peptides corresponding to the antibody epitope to confirm specificity.

  • Genetic Controls: Test antibodies against LAG-3 knockout/knockdown cells compared to wildtype controls.

  • Cross-reactivity Testing: Confirm specificity against related proteins in the same family.

  • Multiple Application Validation: Validate the antibody in all intended experimental applications (WB, IHC, Flow Cytometry, etc.).

  • SPR Analysis: Consider surface plasmon resonance to determine binding kinetics and affinity .

How can researchers optimize LAG-3 antibody-based flow cytometry protocols for detecting activated T cells?

Optimizing LAG-3 antibody-based flow cytometry requires careful attention to several factors:

  • Sample Preparation: Fresh samples yield better results; use lymphocyte separation medium for PBMCs.

  • Activation Timing: LAG-3 expression is upregulated upon T-cell activation; consider time-course experiments to determine optimal detection windows (typically 24-72 hours post-activation).

  • Panel Design: Include markers for T-cell subsets (CD3, CD4, CD8) and other activation/exhaustion markers (PD-1, TIM-3) to contextualize LAG-3 expression.

  • Titration: Perform antibody titration to determine optimal concentration for each lot.

  • Live/Dead Discrimination: Include viability dyes as LAG-3 can be upregulated during apoptosis.

  • Blocking Step: Pre-block samples with FcR blocking reagent to prevent non-specific binding.

  • Controls: Use fluorescence minus one (FMO) controls and isotype controls to set accurate gates.

  • Co-staining Validation: When used in multi-parameter panels, validate for spectral overlap and compensation .

What are the critical considerations when designing experiments to evaluate LAG-3 and PD-1 co-blockade?

When designing experiments to evaluate LAG-3 and PD-1 co-blockade, researchers should consider:

  • Antibody Selection: Choose antibodies with validated blocking function rather than just binding capacity. Ensure epitopes targeted do not interfere with each other's binding.

  • Bispecific vs. Combination Approach: Determine whether to use separate antibodies or bispecific constructs like IBI323. Bispecific antibodies may provide advantages through cell bridging effects.

  • Dosing Ratios: Optimize the ratio between anti-LAG-3 and anti-PD-1/PD-L1 antibodies, as synergistic effects depend on relative concentrations.

  • Sequential vs. Simultaneous Administration: Test both simultaneous and sequential blockade, as temporal dynamics may impact efficacy.

  • Readout Selection: Include multiple readouts (T-cell proliferation, cytokine production, cytotoxicity assays) to comprehensively assess functional restoration.

  • Target Cell Populations: Analyze effects on different T-cell subsets, particularly TILs (tumor-infiltrating lymphocytes) if working with cancer models.

  • Tumor Microenvironment Context: Consider using 3D culture systems or in vivo models that better recapitulate the immunosuppressive tumor microenvironment.

  • Duration Analysis: Monitor both immediate effects and sustained responses to understand the durability of immune reactivation .

What cell-based assays are most effective for evaluating LAG-3 antibody blocking activity?

Several cell-based assays can effectively evaluate LAG-3 antibody blocking activity:

  • LAG-3/MHC-II Blocking Assay: This assay measures the ability of antibodies to block the interaction between LAG-3 and MHC class II. The protocol involves:

    • Mix serially diluted antibodies with LAG-3-mouse Fc fusion protein

    • Incubate the mixture with cells overexpressing human MHC class II

    • Detect binding with labeled secondary antibodies

    • Analyze by flow cytometry to determine mean fluorescence intensity (MFI)

  • T-cell Activation Assay: Measures restoration of T-cell function:

    • Isolate CD4+ or CD8+ T-cells from peripheral blood

    • Induce exhausted phenotype (chronic stimulation)

    • Add LAG-3 blocking antibodies alone or in combination with anti-PD-1

    • Measure activation markers, proliferation, and cytokine production

  • Reporter Cell Assays: Engineered cells with LAG-3-dependent reporter systems can provide quantitative readouts of blocking activity.

  • MLR (Mixed Lymphocyte Reaction): Evaluates the ability of LAG-3 antibodies to enhance allogeneic T-cell responses .

How should researchers develop and validate bispecific antibodies targeting LAG-3 and other immune checkpoints?

Developing and validating bispecific antibodies targeting LAG-3 and other immune checkpoints (such as PD-L1) requires several methodological steps:

  • Antibody Generation and Selection:

    • Generate individual antibodies against each target using display technologies (phage, yeast)

    • Select candidates based on binding affinity, blocking activity, and specificity

    • Perform affinity maturation if necessary

  • Bispecific Format Selection:

    • Consider various formats (dual-variable domain, scFv fusions, sdAb-Fc fusions)

    • Evaluate stability, manufacturability, and biological properties of each format

  • Binding Validation:

    • Validate binding to each target individually using SPR (Biacore)

    • Confirm binding to target-expressing cells (e.g., CHO cells expressing PD-L1, 293-F cells expressing LAG-3, activated human T cells)

  • Functional Validation:

    • Assess blocking activity for each target

    • Evaluate cell bridging effects

    • Compare to monospecific parental antibodies and combinations

  • Manufacturing and Purification:

    • Express in suitable cell systems (CHO cells common)

    • Purify using appropriate chromatography methods (protein A capture, ion exchange)

  • Quality Control:

    • Confirm homogeneity and absence of aggregation

    • Validate thermal stability

    • Ensure endotoxin-free preparation .

What are the best practices for quantifying LAG-3 expression in tumor microenvironment samples?

Quantifying LAG-3 expression in tumor microenvironment samples requires careful methodological considerations:

  • Sample Processing:

    • Process fresh tumor samples quickly to preserve antigen integrity

    • For FFPE samples, optimize antigen retrieval conditions specifically for LAG-3

    • Consider using multiplex approaches to maintain spatial context

  • Antibody Selection and Validation:

    • Use antibodies validated for the specific application (IHC-P, IHC-F, Flow cytometry)

    • Validate antibodies on positive controls (activated T-cells) and negative controls

    • Consider clone-specific differences in epitope recognition

  • Multiplex Immunohistochemistry:

    • Combine LAG-3 staining with markers for T-cell subsets (CD3, CD4, CD8)

    • Include other checkpoint molecules (PD-1, TIM-3) for comprehensive profiling

    • Employ tyramide signal amplification for improved sensitivity

  • Digital Pathology and Image Analysis:

    • Use digital image analysis for objective quantification

    • Develop algorithms that can distinguish membrane vs. cytoplasmic staining

    • Analyze both percentage of positive cells and expression intensity

  • Single-cell Analysis Approaches:

    • Consider scRNA-seq for transcriptomic profiling alongside protein expression

    • Use CyTOF or spectral flow cytometry for high-dimensional phenotyping

    • Correlate LAG-3 expression with functional states and other markers .

How can researchers resolve contradictory data when analyzing LAG-3 antibody efficacy in different model systems?

When faced with contradictory data regarding LAG-3 antibody efficacy across different model systems, researchers should:

  • Systematic Comparison of Experimental Variables:

    • Create a comprehensive table comparing all experimental parameters across studies

    • Identify critical differences in antibody clones, concentrations, timing, and readouts

    • Evaluate species-specific differences if comparing mouse and human systems

  • Model System Evaluation:

    • Assess how well each model recapitulates human LAG-3 biology

    • Consider differences between in vitro, ex vivo, and in vivo systems

    • Evaluate tumor models for relevant immune infiltration patterns

  • Mechanistic Analysis:

    • Perform mechanistic studies to understand the molecular basis for discrepancies

    • Investigate context-specific ligand expression (MHC-II, FGL1)

    • Analyze co-expression of other immune checkpoints that might compensate

  • Statistical Reanalysis:

    • Perform power analysis to determine if sample sizes were adequate

    • Consider whether appropriate statistical tests were used

    • Evaluate variability within data sets and potential outliers

  • Independent Validation:

    • Reproduce key experiments with multiple antibody clones

    • Validate in orthogonal model systems

    • Use genetic approaches (CRISPR knockout) to complement antibody studies .

What approaches should be used to analyze synergistic effects between LAG-3 blockade and other immunotherapeutic strategies?

Analyzing synergistic effects between LAG-3 blockade and other immunotherapeutic strategies requires sophisticated approaches:

  • Combination Index Analysis:

    • Apply Chou-Talalay method to quantitatively determine synergy, additivity, or antagonism

    • Generate dose-response curves for each agent alone and in combination

    • Calculate combination index (CI) values across different dose combinations

  • Response Surface Methodology:

    • Create three-dimensional response surfaces to visualize interaction effects

    • Identify optimal dose combinations and potential antagonistic regions

  • Sequential vs. Simultaneous Administration Analysis:

    • Compare different treatment schedules to identify temporal dependencies

    • Analyze molecular and cellular changes after each treatment step

  • Mechanistic Pathway Analysis:

    • Perform signaling pathway analysis to identify convergent or divergent mechanisms

    • Use phospho-flow or CyTOF to measure signaling events at single-cell resolution

    • Apply systems biology approaches to model pathway interactions

  • Immune Phenotyping Before and After Treatment:

    • Comprehensive immune monitoring to identify cellular changes

    • Track changes in different immune cell populations and their functional status

    • Correlate phenotypic changes with efficacy endpoints

  • Transcriptomic and Proteomic Analysis:

    • Apply RNA-seq and proteomics to identify molecular signatures of response

    • Use single-cell approaches to resolve heterogeneity in response

    • Identify biomarkers predictive of synergistic response .

How might next-generation LAG-3 antibodies improve upon current limitations in research applications?

Next-generation LAG-3 antibodies could address current limitations through several innovations:

  • Enhanced Epitope Targeting:

    • Development of antibodies targeting novel epitopes that more effectively disrupt LAG-3/ligand interactions

    • Structure-guided antibody engineering to target functionally critical domains

  • Improved Format Diversity:

    • Site-specific conjugation technologies for more homogeneous ADCs (antibody-drug conjugates)

    • Novel bispecific formats with optimized geometry and binding stoichiometry

    • Smaller formats (nanobodies, single-domain antibodies) for improved tissue penetration

  • Engineered Fc Domains:

    • Fc engineering to enhance or eliminate effector functions depending on research goals

    • pH-dependent binding for improved recycling and half-life

    • Conditional activation in specific microenvironments

  • Enhanced Detection Sensitivity:

    • Development of high-affinity antibodies for detecting low-level LAG-3 expression

    • Brighter fluorophore conjugates for improved flow cytometry and imaging applications

  • Species Cross-Reactivity:

    • Generation of antibodies with broader species cross-reactivity to facilitate translation between model systems

    • Humanized models with improved predictive validity for clinical outcomes .

What emerging technologies will advance LAG-3 research beyond current antibody-based approaches?

Several emerging technologies promise to advance LAG-3 research beyond traditional antibody approaches:

  • Alternative Binding Scaffolds:

    • Non-antibody protein scaffolds (DARPins, Affibodies, Centyrins) offering smaller size and novel binding properties

    • DNA/RNA aptamers as alternative LAG-3 binding molecules with unique advantages

  • Advanced Genetic Engineering:

    • CRISPR-based screening to identify novel regulators of LAG-3 expression and function

    • Synthetic biology approaches to create cells with engineered LAG-3 circuits

    • Gene-modified T cells with controlled LAG-3 expression for adoptive cell therapy

  • Advanced Imaging Technologies:

    • Super-resolution microscopy to study LAG-3 clustering and immunological synapse dynamics

    • Intravital imaging to track LAG-3+ cells in vivo in real-time

    • PET imaging with labeled antibodies for whole-body tracking of LAG-3 expression

  • Artificial Intelligence Applications:

    • Machine learning algorithms to predict LAG-3 expression patterns

    • AI-assisted antibody design and optimization

    • Advanced image analysis for multiplex tissue imaging data

  • Organoid and Microphysiological Systems:

    • Advanced 3D culture systems incorporating multiple cell types

    • Organ-on-chip technologies to study LAG-3 in complex tissue contexts

    • Patient-derived organoids for personalized immunotherapy research .

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