MAPRE1 Antibody

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Buffer
PBS with 0.02% Sodium Azide, 50% Glycerol, pH 7.3. Store at -20°C. Avoid freeze / thaw cycles.
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Synonyms
5530600P05Rik antibody; Adenomatous polyposis coli binding protein EB 1 antibody; Adenomatous polyposis coli binding protein EB1 antibody; AI462499 antibody; AI504412 antibody; APC binding protein EB 1 antibody; APC binding protein EB1 antibody; APC-binding protein EB1 antibody; AW260097 antibody; BIM1p antibody; D2Ertd459e antibody; EB 1 antibody; EB1 antibody; End binding protein 1 antibody; End-binding protein 1 antibody; fa01e12 antibody; fc23e11 antibody; fi33c06 antibody; MAPRE 1 antibody; MAPRE1 antibody; Mapre3 antibody; MARE1_HUMAN antibody; MGC117374 antibody; MGC129946 antibody; MGC52508 antibody; Microtubule associated protein RP/EB family member 1 antibody; Microtubule-associated protein RP/EB family member 1 antibody; wu:fa01e12 antibody; wu:fc23e11 antibody; wu:fi33c06 antibody; zgc:55428 antibody; zgc:77807 antibody; zgc:85755 antibody
Target Names
MAPRE1
Uniprot No.

Target Background

Function
MAPRE1 is a plus-end tracking protein (+TIP) that binds to the plus-end of microtubules. It plays a crucial role in regulating the dynamics of the microtubule cytoskeleton. MAPRE1 promotes cytoplasmic microtubule nucleation and elongation. It may be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. Additionally, it acts as a regulator of minus-end microtubule organization. MAPRE1 interacts with the complex formed by AKAP9 and PDE4DIP, leading to the recruitment of CAMSAP2 to the Golgi apparatus. This process tethers non-centrosomal minus-end microtubules to the Golgi, which is essential for polarized cell movement. MAPRE1 further promotes the elongation of CAMSAP2-decorated microtubule stretches on the minus-end of microtubules. It also serves as a regulator of autophagosome transport through its interaction with CAMSAP2. MAPRE1 may play a role in cell migration.
Gene References Into Functions
  1. EB1 and dynein facilitate migration in 3D by promoting microtubule dynamics, through the activity of RhoA, in microtubule-rich pseudopodial dendritic protrusions that drive cell migration in 3D. PMID: 29097501
  2. Depletion of End-binding protein 1 (EB1) results in a significant reduction of spindle and kinetochore-associated protein 1 (Ska1) recruitment onto microtubules, leading to defects in mitotic chromosome alignment. PMID: 27225956
  3. The cytotoxicity induced by EB1 gene knockdown is attributed to the activation and generation of reactive oxygen species by p38 mitogen-activated protein kinase. This signaling cascade, but not nuclear factor-kappaB-mediated signaling, induces the expression of cyclooxygenase-2, a key effector of apoptotic death. PMID: 29484424
  4. ASK1-induced phosphorylation of EB1 enhances its plus end-tracking ability and promotes its recruitment of CLIP170 and p150glued to astral microtubules. PMID: 28039481
  5. A novel EB1 acetylation site regulates the dynamic structure of microtubules. PMID: 28777446
  6. Increased peripheral EB1 distribution is a critical component of the Rac1-mediated pathway and peripheral cytoskeletal remodeling essential for agonist-induced endothelial cell barrier enhancement. PMID: 27667566
  7. Furthermore, EB1 phosphorylation at Y247 by Src enhances the rate of microtubule catastrophe and significantly stimulates cell migration. These findings demonstrate that the Src-EB1 axis plays a crucial role in regulating the crosstalk between microtubules and focal adhesions to promote cell migration. PMID: 27698945
  8. EB1 and EB3 influence multiple interphase processes and significantly impact microtubule minus end organization. PMID: 28814570
  9. Noncentrosomal MTs regulate autophagy through a cross-talk between CAMSAP2 and EB1. PMID: 28726242
  10. Research indicates that EB1 collaborates with CDK5RAP2 and possibly other SXIP-containing +TIPs in tracking growing microtubule tips. PMID: 28320860
  11. Studies provide unique structural information regarding the interaction of EB1 with growing microtubule ends. PMID: 27617931
  12. As a microtubule plus-end tracking protein (+TIP), EB1 is a potential candidate for bridging the gap between microtubule and actomyosin dynamics. PMID: 28132723
  13. EB1 overexpression is an early event in oral tumorigenesis, and cytoplasmic EB1 accumulation is associated with poor prognosis and tumor recurrence in oral squamous cell carcinoma patients. PMID: 27208742
  14. A novel mechanism is proposed whereby ATIP3-EB1 interaction indirectly reduces the kinetics of EB1 exchange on its recognition site, thus accounting for negative regulation of microtubule dynamic instability. PMID: 26498358
  15. MAPRE1 can contribute to the detection of early-stage colorectal cancer and adenomas in conjunction with other biomarkers. PMID: 26342024
  16. Research demonstrates that the microtubule binding protein EB1, a key regulator of microtubule dynamics, can directly bind to filamentous actin (F-actin). PMID: 26854759
  17. A previously uncharacterized EB1 linker region tracks microtubule plus ends in live cells. PMID: 25355949
  18. Studies show that the presence of EB1 can stiffen microtubules in a manner dependent on the hydrolysis state of the tubulin-bound nucleotide. PMID: 25160006
  19. The functions of EB1 in regulating microtubule dynamics and recruiting other +TIPs, as well as the dimerization of EB1, are precisely controlled by phosphorylation. PMID: 25048701
  20. TTBK2 bound EB1 and Cep164 through its SxIP motifs and a proline-rich motif, respectively. PMID: 25297623
  21. Research shows that EB1 associates with microtubules in a phosphorylation-dependent manner, regulated by reactive oxygen species. PMID: 24930764
  22. EB1 plays a role in linking AIM2 inflammasomes with autophagy-dependent secretion. PMID: 25164813
  23. Aptamers binding to human EB1 and EB3, with sequence requirements similar to but distinct from each other and from Drosophila EB1, have been identified. PMID: 24478452
  24. A subset of arrhythmogenic cardiomyopathy mutations, in addition to a mutation associated with skin fragility/woolly hair syndrome, impair gap junction localization and function by misregulating DP-EB1 interactions and altering microtubule dynamics. PMID: 25225338
  25. The CYLD-EB1 interaction has been confirmed both in cells and in vitro. These two proteins colocalize at the plus ends of microtubules. The association of CYLD with EB1 is significantly increased upon stimulation of cell migration. PMID: 24552808
  26. Studies indicate that IQGAP1 functions as a hub linking HGF-induced signaling to microtubules and actin remodeling via EB1-IQGAP1-cortactin interactions. PMID: 25022754
  27. The EB1-kinesin complex actively steered growing microtubules in an in vitro model. PMID: 24462004
  28. Research finds that frictional forces increase nonlinearly with microtubule-associated proteins (MAP) velocity across microtubules and depend on filament polarity. NuMA exhibits lower friction when moving toward minus ends, EB1 exhibits lower friction toward plus ends, and PRC1 shows no directional preference. PMID: 24725408
  29. EB1 and EB3 proteins are obligatory dimers. PMID: 24040250
  30. EB1 enables the spindle microtubules to regulate the phosphorylation of kinetochores through recruitment of the Aurora B kinase. PMID: 24616220
  31. Dysregulation of EB1 is a significant early event in colon carcinogenesis. PMID: 24492008
  32. EB proteins appear to actively participate in the subsequent association of STIM1 to APC at the ER-PM junction. PMID: 23871111
  33. Regulation of EB1 dimerization may play a role in controlling EB1 function. PMID: 23864329
  34. Phosphorylation of STIM1 at Ser575, Ser608, and Ser621 regulates its interaction with EB1. PMID: 23687376
  35. Depletion of end-binding protein 1 (EB1) promotes apoptosis of human non-small-cell lung cancer cells via reactive oxygen species and Bax-mediated mitochondrial dysfunction. PMID: 23900080
  36. The TIP150-EB1 interaction governs kinetochore microtubule plus-end plasticity, and research establishes that the temporal control of the TIP150-EB1 interaction by PCAF acetylation ensures chromosome stability in mitosis. PMID: 23595990
  37. Observations suggest that EB1 and ch-TOG regulate microtubule organization differently through distinct regions in the plus ends of microtubules. PMID: 23251535
  38. End binding protein 1 directly interacts with AIM2 and ASC both in vitro and in vivo. PMID: 22869553
  39. The intramolecular interaction site of EB1 overlaps the MT binding sites, indicating that the MT binding sites are masked by interaction with the C-terminal domain. PMID: 23128140
  40. EB1 is a potential biomarker and therapeutic target in colorectal cancer. PMID: 22735596
  41. STIM1 dissociates from EB1 in mitosis. PMID: 22748319
  42. Data indicate that EB1 is a substrate of P300/CBP-associated factor (PCAF), and K220 has been identified as a responsible site. PMID: 23001180
  43. The Amer2-EB1-APC complex regulates cell migration by altering microtubule stability. PMID: 22898821
  44. Research further demonstrates that this binding is prevented when the C-terminal tyrosine of EB1 is absent in the peptidic probes. PMID: 22543185
  45. Increased plasma levels of the APC-interacting protein MAPRE1, LRG1, and IGFBP2 precede a diagnosis of colorectal cancer in women. PMID: 22277732
  46. Multisite phosphorylation disrupts arginine-glutamate salt bridge networks required for the binding of cytoplasmic linker-associated protein 2 (CLASP2) to end-binding protein 1 (EB1). PMID: 22467876
  47. Kif18B is a new MT dynamics regulatory protein that interacts with EB1 to control astral MT length. PMID: 21737685
  48. Data indicate that EB1 and EB3 interact with proteins implicated in MT minus-end anchoring or vesicular trafficking to the cilia base, suggesting that EB1 and EB3 promote ciliogenesis by facilitating such trafficking. PMID: 21768326
  49. Insights into EB1 structure and the role of its C-terminal domain for discriminating microtubule tips from the lattice. PMID: 21737692
  50. Decreased MAPRE1 expression coincided with increased miR-10b expression, suggesting that miR-10b targets MAPRE1 transcription. PMID: 21562367

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Database Links

HGNC: 6890

OMIM: 603108

KEGG: hsa:22919

STRING: 9606.ENSP00000364721

UniGene: Hs.472437

Protein Families
MAPRE family
Subcellular Location
Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Golgi apparatus.
Tissue Specificity
Ubiquitously expressed.

Q&A

What is MAPRE1 and why is it significant in cellular research?

MAPRE1, also known as EB1 (End-binding protein 1), is a key regulator of microtubule dynamics that localizes at the growing plus ends of microtubules and the centrosome. It plays critical roles in cell division, cell migration, and the regulation of cell polarity and chromosome stability . The human MAPRE1 protein is 268 amino acids in length with a mass of approximately 30 kDa and is ubiquitously expressed across many tissue types . Its significance stems from its interactions with the adenomatous polyposis coli (APC) tumor suppressor protein, targeting APC to microtubule plus ends . This interaction has implications for understanding cytoskeletal dynamics, cellular division mechanisms, and potentially cancer development pathways. MAPRE1 is essential for anchoring cytoplasmic microtubule minus ends to the subdistal appendages of the mother centriole, making it a vital component in studies of cellular architecture and function .

What epitopes are most commonly targeted in MAPRE1 antibodies and why?

MAPRE1 antibodies target various epitopes across the protein structure, with several common regions being particularly important for research applications. Based on the search results, common epitope regions include:

Epitope Region (AA)Frequency in Available AntibodiesFunctional Significance
AA 1-110Multiple productsN-terminal domain involved in microtubule binding
AA 134-268Several productsC-terminal domain involved in protein interactions
AA 2-268Multiple productsNear full-length protein recognition
AA 44-71Specific antibodiesN-terminal region

The C-terminal region (AA 134-268) contains the sequence "ETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIP" which is targeted by several antibodies . This region is significant as it contains domains necessary for protein-protein interactions, including those with APC. N-terminal domains (approximately AA 1-110) are often targeted because they contain microtubule-binding regions essential for MAPRE1's localization and function .

How should researchers distinguish between MAPRE1 isoforms when selecting antibodies?

When studying MAPRE1, researchers must carefully consider potential isoforms and ensure their selected antibody recognizes the specific variant of interest. The canonical human MAPRE1 protein has 268 amino acid residues, but alternative splicing may produce variant isoforms . To properly distinguish between these:

  • Epitope mapping: Verify which amino acid sequence the antibody recognizes and whether this sequence is present in all isoforms or specific to certain variants .

  • Western blot validation: Perform preliminary Western blots with positive controls to confirm the antibody detects bands at the expected molecular weights for your target isoform. The canonical form appears at approximately 30 kDa .

  • Literature cross-referencing: Compare your experimental needs with published studies that have successfully used specific antibodies for particular MAPRE1 isoforms.

  • Recombinant protein controls: Use recombinant proteins representing different MAPRE1 isoforms to validate antibody specificity before conducting your main experiments .

  • Cross-reactivity assessment: Review the antibody's documented cross-reactivity with isoforms in different species if performing comparative studies .

What are the optimal applications for different formats of MAPRE1 antibodies?

MAPRE1 antibodies are available in various formats that are optimized for specific experimental applications. Based on the search results, the following applications are most commonly supported:

Antibody FormatOptimal ApplicationsSpecial Considerations
Unconjugated primary antibodiesWestern Blotting (WB), Immunohistochemistry (IHC), Immunoprecipitation (IP), Immunocytochemistry (ICC)Most versatile format; requires secondary antibody detection
Fluorophore-conjugated (e.g., Janelia Fluor 525)Immunohistochemistry-Paraffin, fluorescence microscopyDirect visualization without secondary antibody; optimal for co-localization studies
Monoclonal antibodiesApplications requiring high specificity and reproducibilityBest for detecting specific epitopes with minimal batch variation
Polyclonal antibodiesApplications requiring signal amplificationRecognizes multiple epitopes, providing stronger signals but potentially more background

For cellular localization studies, fluorophore-conjugated antibodies like the MAPRE1 Antibody [Janelia Fluor® 525] provide direct visualization of MAPRE1 at microtubule plus ends and centrosomes . For protein interaction studies using immunoprecipitation, unconjugated antibodies raised against the C-terminal domain (AA 134-268) are particularly effective as this region contains binding sites for partner proteins . When selecting an antibody format, researchers should consider the subcellular localization of interest (Golgi, cytoplasm, microtubule plus ends) and the need for co-localization with other proteins .

How should researchers optimize MAPRE1 antibody dilutions for immunostaining applications?

Optimizing antibody dilutions is critical for achieving specific staining with minimal background. For MAPRE1 antibodies, a systematic approach is recommended:

  • Starting point determination: For most MAPRE1 antibodies, manufacturers recommend that "optimal dilutions should be experimentally determined" . This typically begins with a dilution series (e.g., 1:100, 1:250, 1:500, 1:1000).

  • Tissue-specific optimization: MAPRE1 is ubiquitously expressed but at varying levels across tissues. Higher expressing tissues may require more dilute antibody solutions, while lower expressing tissues might need more concentrated antibody preparations .

  • Fixation consideration: Different fixation methods can affect epitope accessibility. For formalin-fixed paraffin-embedded (FFPE) tissues, antigen retrieval methods should be optimized alongside antibody dilution .

  • Signal-to-noise assessment matrix:

    DilutionSignal StrengthBackgroundSignal-to-Noise Ratio
    1:100StrongHighLow to Moderate
    1:250Strong to ModerateModerateModerate
    1:500ModerateLow to ModerateModerate to High
    1:1000Weak to ModerateLowVariable
  • Block optimization: Since MAPRE1 is found in both Golgi and cytoplasm , effective blocking is crucial. A combination of serum (5-10%) matched to the secondary antibody species and BSA (1-3%) is typically effective.

  • Incubation conditions: Overnight incubation at 4°C often yields better results than shorter incubations at room temperature, particularly for dilute antibody solutions.

The optimal dilution will balance specific staining of MAPRE1's characteristic patterns (microtubule plus ends, centrosomes) while minimizing non-specific background .

What controls are essential when validating MAPRE1 antibody specificity?

Proper validation of MAPRE1 antibody specificity requires several critical controls:

  • Positive tissue/cell controls: Include samples known to express MAPRE1 (e.g., dividing cells where MAPRE1 localizes to plus ends of microtubules and centrosomes) .

  • Negative controls:

    • Primary antibody omission: Apply only secondary antibody to detect non-specific binding

    • Isotype control: Use non-specific IgG from the same host species (rabbit or mouse, depending on the antibody)

    • Peptide competition/blocking: Pre-incubate antibody with immunizing peptide to confirm binding specificity

  • Genetic controls:

    • MAPRE1 knockdown/knockout: Compare staining between wild-type cells and those with reduced/absent MAPRE1 expression

    • Overexpression system: Cells transfected with MAPRE1 expression constructs should show enhanced signal

  • Cross-validation with multiple antibodies: Use antibodies targeting different epitopes of MAPRE1 (e.g., N-terminal AA 1-110 versus C-terminal AA 134-268) . Agreement between antibodies increases confidence in specificity.

  • Application-specific controls:

    • For Western blotting: Molecular weight markers to confirm the 30 kDa band expected for MAPRE1

    • For immunostaining: Co-staining with tubulin to confirm localization at microtubule plus ends

    • For immunoprecipitation: Input, flow-through, and non-specific binding controls

  • Cross-species reactivity: If using antibodies across species, include positive controls from each species to confirm cross-reactivity as documented (e.g., Human, Mouse, Rat) .

What are common technical challenges when using MAPRE1 antibodies in Western blotting?

Researchers often encounter specific challenges when using MAPRE1 antibodies in Western blotting. Here are common issues and their methodological solutions:

  • Multiple bands or unexpected molecular weights: MAPRE1 has a canonical molecular weight of 30 kDa . If detecting bands at unexpected sizes:

    • Verify sample preparation methods (proper lysis buffers that preserve protein integrity)

    • Check for post-translational modifications (MAPRE1 undergoes acetylation)

    • Consider splice variants or degradation products

    • Use phosphatase inhibitors as MAPRE1 can be phosphorylated

  • Weak signal strength: When signal is faint despite adequate protein loading:

    • Increase primary antibody concentration or incubation time (overnight at 4°C)

    • Enhance detection sensitivity with higher-sensitivity ECL substrates

    • For epitopes in the AA 134-268 region, ensure your antibody specifically targets this region

    • Use polyclonal antibodies for signal amplification due to their recognition of multiple epitopes

  • High background signal:

    • Increase washing duration and frequency (5-6 washes of 10 minutes each)

    • Optimize blocking (5% BSA often performs better than milk for phosphoprotein detection)

    • Dilute antibody in fresh blocking buffer

    • Use more stringent antibody diluent (add 0.1-0.2% Tween-20)

  • Inconsistent results across experiments:

    • Standardize lysate preparation methods

    • Use freshly prepared samples (MAPRE1 is subject to degradation)

    • Consider using purified recombinant MAPRE1 as a positive control

    • Document lot numbers of antibodies as different lots may have slight variations in performance

  • Cross-reactivity issues:

    • Choose antibodies validated for your species of interest (Human, Mouse, Rat)

    • Check homology between species for the specific epitope targeted by your antibody

    • Increase washing stringency to remove weak cross-reactive binding

How can researchers optimize immunofluorescence protocols for visualizing MAPRE1 at microtubule plus ends?

Visualizing MAPRE1 at microtubule plus ends requires special considerations for immunofluorescence protocols:

  • Fixation optimization:

    • Cold methanol fixation (5-10 minutes at -20°C) often preserves microtubule structures better than formaldehyde

    • If using formaldehyde, a brief permeabilization with 0.1% Triton X-100 is essential for antibody access

    • Avoid harsh detergents that may disrupt microtubule architecture

  • Cell culture considerations:

    • Plate cells at subconfluent density to observe individual cells clearly

    • Use cell lines with well-defined microtubule networks (e.g., U2OS, RPE1)

    • Consider treating cells with microtubule-stabilizing agents (e.g., low-dose taxol) to enhance visualization of plus ends

  • Antibody selection and application:

    • For direct visualization, fluorophore-conjugated antibodies like MAPRE1 Antibody [Janelia Fluor® 525] provide high sensitivity without secondary antibody amplification

    • For co-localization studies, carefully select primary antibodies from different host species to avoid cross-reactivity

    • Apply antibodies in sequence with thorough washing between steps

  • Imaging parameters optimization:

    • Use high-NA objectives (1.3-1.4) for optimal resolution

    • Consider deconvolution or super-resolution techniques for detailed plus-end visualization

    • Confocal microscopy with appropriate pinhole settings improves signal-to-noise ratio

    • Z-stack acquisition is recommended as microtubules occupy different focal planes

  • Signal enhancement strategies:

    • Implement tyramide signal amplification for weak signals

    • Use image acquisition settings that maximize dynamic range without saturation

    • Consider quantum dots or other bright, photostable fluorophores for long-term imaging

  • Co-staining recommendation matrix:

    Co-staining PartnerInformation ProvidedTechnical Considerations
    α-tubulinLocalization relative to microtubule latticeUse different host species antibodies
    EB3 (MAPRE3)Distinction between EB family membersMay require careful titration due to homology
    APCInteraction between MAPRE1 and APC tumor suppressorOften requires gentler fixation
    CLIP-170+TIP complex visualizationConsider sequential rather than simultaneous staining
    Phospho-specific markersCell cycle status correlationMay require phosphatase inhibitors

Successful visualization typically shows MAPRE1 as distinct "comet-like" structures at growing microtubule plus ends, particularly evident in cells undergoing division or migration .

How can MAPRE1 antibodies be used to investigate microtubule dynamics in different disease models?

MAPRE1 antibodies provide valuable tools for investigating microtubule dynamics in disease contexts, particularly in cancer, neurodegeneration, and developmental disorders:

  • Cancer research applications:

    • MAPRE1 interacts with the APC tumor suppressor protein, making it relevant for colorectal cancer studies

    • Use immunohistochemistry with paraffin-embedded tissue samples to compare MAPRE1 localization patterns between normal and tumor tissues

    • Quantify MAPRE1 levels by Western blotting to correlate with tumor invasion or metastasis potential

    • Co-immunoprecipitation experiments can identify altered protein interactions in cancer cells

  • Neurodegenerative disease investigations:

    • In Alzheimer's and Parkinson's models, microtubule dynamics are frequently disrupted

    • Analyze MAPRE1 localization in primary neuronal cultures using fluorophore-conjugated antibodies

    • Compare MAPRE1-decorated microtubule plus-end density between control and disease-state samples

    • Correlate MAPRE1 binding patterns with tau aggregation or α-synuclein accumulation

  • Developmental disorder research:

    • MAPRE1's role in cell division makes it relevant for studying disorders of neuronal migration and positioning

    • Examine MAPRE1 immunoreactivity patterns in developmental time course experiments

    • Combine with cell cycle markers to assess potential mitotic defects

  • Methodological approach by disease context:

    Disease ContextRecommended Antibody ApplicationKey Parameters to Assess
    CancerIHC-P, WB, IPExpression levels, protein interactions, subcellular localization
    NeurodegenerationIF, WB, Live imagingComet density, microtubule growth rates, correlation with aggregates
    Developmental disordersIHC, IF time courseTemporal expression patterns, localization during cell division
    InflammationFACS, WBExpression levels in immune cell populations
  • Specialized techniques:

    • Proximity ligation assay (PLA) to visualize MAPRE1 interactions with disease-relevant proteins

    • FRAP (Fluorescence Recovery After Photobleaching) using fluorophore-conjugated antibodies to assess dynamic protein turnover

    • Correlative light-electron microscopy to connect MAPRE1 localization with ultrastructural features

When interpreting results, researchers should note that alterations in MAPRE1 patterns may be either causal factors or consequences of disease processes, requiring careful experimental design to distinguish between these possibilities .

What approaches are recommended for studying post-translational modifications of MAPRE1 using antibodies?

Post-translational modifications (PTMs) of MAPRE1, particularly acetylation and phosphorylation, play crucial roles in regulating its function and interactions . Studying these modifications requires specialized approaches:

  • PTM-specific antibody selection:

    • Use antibodies specifically raised against acetylated or phosphorylated forms of MAPRE1

    • For phosphorylation studies, consider site-specific phospho-antibodies targeting known regulatory residues

    • Validate PTM-specific antibodies using appropriate controls (e.g., phosphatase-treated samples)

  • Enrichment strategies before detection:

    • For acetylation studies: Immunoprecipitate total MAPRE1 first, then probe with anti-acetyl lysine antibodies

    • For phosphorylation: Use phospho-enrichment techniques (phospho-protein enrichment kits, TiO₂ enrichment)

    • Include phosphatase inhibitors in all buffers when studying phosphorylation

  • Validation approaches:

    • Compare PTM detection before and after treatment with modifying enzymes (phosphatases, deacetylases)

    • Use recombinant MAPRE1 with site-directed mutations at modification sites as negative controls

    • Employ mass spectrometry to independently confirm antibody-detected modifications

  • PTM dynamics investigation:

    • Analyze modifications across cell cycle phases (G1, S, G2/M)

    • Examine PTM patterns after treatment with microtubule-targeting drugs

    • Study modification changes in response to cellular stress or signaling events

  • Technical recommendations by modification type:

    Modification TypeRecommended TechniqueCritical ControlsCommon Pitfalls
    PhosphorylationPhos-tag SDS-PAGE with WBLambda phosphatase treatmentMultiple phosphorylation sites causing band shifts
    AcetylationIP followed by acetyl-lysine WBDeacetylase treatmentWeaker signals requiring enhanced detection
    UbiquitinationIP under denaturing conditionsProteasome inhibitor treatmentShort half-life of ubiquitinated species
    SumoylationIP with SUMO-specific antibodiesSUMO-protease inhibitorsLow abundance requiring enrichment
  • Functional correlation methods:

    • Combine PTM detection with functional assays (microtubule binding, protein interaction)

    • Use live-cell imaging to correlate PTM status with MAPRE1 dynamics at microtubule plus ends

    • Employ super-resolution microscopy to analyze spatial distribution of modified MAPRE1

When interpreting results, consider that different antibodies may have different sensitivities to various PTM combinations, and that modifications can influence each other hierarchically .

How should researchers interpret different MAPRE1 localization patterns throughout the cell cycle?

MAPRE1 exhibits distinct localization patterns during different cell cycle phases, and proper interpretation of these patterns provides insights into both normal cell cycle progression and potential abnormalities:

  • Interphase patterns:

    • Normal pattern: MAPRE1 appears as distinct "comet-like" structures at growing microtubule plus ends, with additional localization at the centrosome

    • Interpretation: Represents active microtubule growth and normal cytoskeletal organization

    • Quantification approach: Measure comet density, length, and intensity to assess microtubule growth dynamics

  • Mitotic patterns:

    • Prophase/Prometaphase: MAPRE1 localizes to astral microtubules and kinetochore fibers

    • Metaphase: Enrichment at spindle poles and along spindle microtubules

    • Anaphase/Telophase: Concentration at the central spindle and midbody

    • Interpretation: Changes in localization reflect MAPRE1's roles in spindle assembly, chromosome alignment, and cytokinesis

    • Quantification approach: Measure fluorescence intensity ratios between spindle regions

  • Pattern analysis by cell cycle phase:

    Cell Cycle PhaseExpected MAPRE1 PatternPotential Abnormal PatternsImplications
    G1Distinct comets throughout cytoplasmDiffuse cytoplasmic stainingDefective microtubule dynamics
    SComets plus centrosomal enrichmentAggregation or loss of centrosomal signalReplication stress or centrosome abnormalities
    G2Increased comet densityPremature spindle-like patternsCell cycle checkpoint issues
    MitosisDynamic redistribution to mitotic structuresAsymmetric distribution or persistent interphase patternChromosome segregation defects
  • Co-localization interpretation:

    • MAPRE1 and APC co-localization: Normal at microtubule plus ends, with implications for Wnt signaling

    • MAPRE1 and tubulin: Should show comets at the ends of microtubules rather than along the entire length

    • MAPRE1 and centrosomal markers: Partial overlap expected during interphase and mitosis

  • Quantitative assessment approaches:

    • Fluorescence intensity profiling along microtubules to confirm plus-end enrichment

    • Co-localization coefficients (Pearson's, Manders') to quantify spatial relationships with other proteins

    • Tracking analysis to measure growth rates of MAPRE1-decorated microtubule ends

When interpreting MAPRE1 patterns, consider that antibody selection can influence results, particularly when comparing monoclonal antibodies (which recognize specific epitopes) versus polyclonal antibodies (which recognize multiple epitopes) . Standardized imaging conditions and analysis parameters are essential for reliable interpretation across experiments.

What statistical approaches are recommended for quantifying MAPRE1 expression differences between experimental conditions?

Quantitative analysis of MAPRE1 expression requires rigorous statistical approaches tailored to the specific experimental technique. Here are recommended methods based on common research applications:

  • Western blot quantification:

    • Normalization strategy: Use housekeeping proteins (β-actin, GAPDH) or total protein stains (Ponceau S)

    • Relative quantification: Calculate MAPRE1/loading control ratio across samples

    • Statistical analysis: Apply paired t-tests for direct comparisons or ANOVA for multiple conditions

    • Data visualization: Box plots showing median, quartiles, and outliers rather than simple bar graphs

  • Immunofluorescence intensity analysis:

    • Cellular compartment analysis: Separately quantify MAPRE1 signals in cytoplasm, Golgi, centrosome, and microtubule plus ends

    • Background correction: Subtract local background using cell-free regions

    • Cell population analysis: Analyze sufficient cells (≥50-100 per condition) to account for natural variation

    • Statistical approach: Hierarchical analysis accounting for cell-to-cell variation within experiments

  • Flow cytometry quantification:

    • Population gating: Isolate specific cell populations based on cell cycle phase or other parameters

    • Fluorescence calibration: Use calibration beads to convert arbitrary units to molecules of equivalent soluble fluorochrome (MESF)

    • Analysis: Compare median fluorescence intensity (MFI) rather than mean values

    • Statistics: Non-parametric tests (Mann-Whitney U) if distributions are non-normal

  • Recommended statistical approaches by experimental design:

    Experimental DesignRecommended Statistical TestSample Size RecommendationsPower Considerations
    Two condition comparisonPaired t-test or WilcoxonMinimum n=3-5 biological replicatesEffect size >1.5 for n=3
    Multiple conditionsOne-way ANOVA with post-hocMinimum n=4-6 per conditionAdjust for multiple comparisons
    Time course experimentsRepeated measures ANOVAConsistent sampling intervalsConsider autocorrelation
    Correlation with clinical outcomesCox regression or Kaplan-MeierPower analysis based on expected HRAccount for covariates
  • Advanced quantitative approaches:

    • Machine learning classification of MAPRE1 localization patterns

    • Bayesian hierarchical modeling to account for technical and biological variability

    • Meta-analysis approaches when combining data across multiple experiments

  • Reporting recommendations:

    • Always include exact p-values rather than threshold statements (p<0.05)

    • Report confidence intervals alongside point estimates

    • Clearly state normalization methods and statistical tests used

    • Consider the clinical or biological significance beyond statistical significance

What emerging techniques are advancing MAPRE1 antibody applications in research?

The field of MAPRE1 research is evolving with several emerging technologies that enhance antibody-based studies:

  • Super-resolution microscopy applications:

    • STORM/PALM techniques allow visualization of individual MAPRE1 molecules at microtubule plus ends

    • Structured illumination microscopy (SIM) enables dynamic tracking of MAPRE1 comets in live cells

    • Expansion microscopy physically enlarges samples to visualize MAPRE1-microtubule interactions at nanoscale resolution

    • These approaches overcome the diffraction limit of conventional microscopy, revealing previously undetectable details of MAPRE1 organization

  • Proximity-based protein interaction detection:

    • BioID/TurboID fusion with MAPRE1 to identify transient interaction partners in living cells

    • APEX2-based proximity labeling to map the MAPRE1 interactome at specific subcellular locations

    • Split-protein complementation assays to visualize MAPRE1 interactions with APC and other partners in real-time

    • These methods capture interactions that may be lost during traditional immunoprecipitation

  • Antibody engineering advancements:

    • Single-domain antibodies (nanobodies) against MAPRE1 for improved penetration in thick tissues

    • Bi-specific antibodies that simultaneously target MAPRE1 and interacting partners

    • Antibody fragments with enhanced tissue penetration for whole-organ imaging

    • Genetically encoded intrabodies for live-cell visualization of MAPRE1 without fixation artifacts

  • High-throughput and multiplexed approaches:

    • Imaging mass cytometry to simultaneously measure MAPRE1 and dozens of other proteins

    • Cyclic immunofluorescence (CycIF) to detect MAPRE1 alongside >30 other proteins in the same sample

    • Automated image analysis pipelines for quantifying MAPRE1 localization across thousands of cells

    • These techniques enable systems-level analysis of MAPRE1 in complex cellular contexts

  • In vivo applications:

    • Intravital microscopy with fluorophore-conjugated antibodies to track MAPRE1 dynamics in living tissues

    • Antibody-based optical imaging probes for non-invasive visualization of microtubule dynamics

    • Clearing-compatible antibodies for whole-organ MAPRE1 mapping in development and disease

These emerging approaches are expanding our understanding of MAPRE1's roles in cellular processes and disease mechanisms, moving beyond traditional applications like Western blotting, immunohistochemistry, and basic immunofluorescence .

How can researchers integrate MAPRE1 antibody data with other omics approaches?

Integrating MAPRE1 antibody-derived data with multi-omics approaches enables comprehensive understanding of microtubule dynamics in health and disease:

  • Integration with transcriptomics:

    • Correlate MAPRE1 protein levels (detected by antibodies) with mRNA expression data

    • Identify potential transcriptional regulators of MAPRE1 expression

    • Examine splice variant expression that might affect antibody recognition sites

    • Approach: Perform Western blotting with antibodies targeting different MAPRE1 epitopes and correlate with RNA-seq data from the same samples

  • Integration with proteomics:

    • Use immunoprecipitation with MAPRE1 antibodies followed by mass spectrometry to identify interaction partners

    • Compare MAPRE1 post-translational modifications detected by specific antibodies with global proteomics data

    • Validate proteomics-identified MAPRE1 interactions using co-immunoprecipitation and proximity ligation assays

    • Approach: Combine MAPRE1 immunoprecipitation using antibodies against different epitopes with LC-MS/MS analysis

  • Integration with genomics:

    • Correlate genetic variations in MAPRE1 or interacting partners with protein expression or localization

    • Examine effects of cancer-associated mutations on MAPRE1 detection by specific antibodies

    • Investigate epigenetic regulation of MAPRE1 expression

    • Approach: Compare MAPRE1 immunostaining patterns across cell lines with different genetic backgrounds

  • Multi-modal data integration framework:

    Omics LayerMAPRE1 Antibody ApplicationIntegration ApproachExpected Insights
    TranscriptomicsWB quantificationCorrelation analysisTranscriptional regulation mechanisms
    ProteomicsIP-MS, PTM-specific detectionNetwork analysisProtein interaction dynamics, regulation
    GenomicsExpression pattern comparisonGenotype-phenotype associationGenetic influences on MAPRE1 function
    MetabolomicsAntibody-based imaging with metabolite detectionSpatial correlationMetabolic influences on microtubule dynamics
    Single-cell analysisAntibody-based flow cytometryClustering and trajectory analysisCell state-dependent MAPRE1 regulation
  • Computational integration strategies:

    • Machine learning approaches to identify patterns across multi-omics datasets

    • Causal network inference to establish regulatory relationships

    • Pathway enrichment analysis incorporating MAPRE1 antibody-derived interaction data

    • Temporal modeling of MAPRE1 dynamics in response to perturbations

  • Validation and functional assessment:

    • Use CRISPR-based perturbations to validate computationally predicted relationships

    • Employ fluorophore-conjugated MAPRE1 antibodies for live-cell imaging to confirm dynamic predictions

    • Develop mathematical models of microtubule dynamics informed by integrated datasets

This integrated approach moves beyond descriptive characterization of MAPRE1 to mechanistic understanding of its roles in complex cellular processes, potentially revealing new therapeutic targets for diseases involving cytoskeletal dysregulation .

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