Malate dehydrogenase 1 (MDH1) antibodies are essential tools for studying cellular metabolism and disease mechanisms. Below are research-focused FAQs organized by complexity level, incorporating experimental design considerations and data analysis challenges from recent studies.
Perform Western blot with positive/negative control lysates (e.g., human liver vs. MDH1-knockout cell lines)
Confirm cellular localization via immunofluorescence using mitochondrial/cytosolic markers
Compare staining patterns across species using recombinant proteins (human vs. mouse MDH1)
| Model System | Antibody Clone | Observed Band (kDa) | Cross-Reactivity | Source |
|---|---|---|---|---|
| Human NSCLC tissue | ab175455 | 36 | Pig, Rat | |
| Mouse liver | 15904-1-AP | 36 | Human, Rat | |
| Prion disease CSF | Custom ELISA | N/A | Human-specific |
Key variables requiring optimization:
Fixation time: Prolonged formalin fixation (>24hr) reduces epitope availability
Antigen retrieval: Citrate buffer (pH 6.0) vs. TE buffer (pH 9.0) shows 40% signal variation in FFPE sections
Antibody dilution: Working concentrations range 1:50 (IHC-P) to 1:5000 (WB) depending on antigen abundance
Perform redox-sensitive Western blot under non-reducing conditions
Quantify both mRNA (Primer set: F-5'-CTGGACCTCAACGGCACCTA-3', R-5'-GCATGGACTGTGGTCATGAG-3') and protein levels
Analyze post-translational modifications via mass spectrometry
Experimental design checklist:
✓ Isotope-labeled malate (¹³C₄) tracer
✓ Concurrent measurement of NAD+/NADH ratio
✓ Knockdown validation using ≥2 independent siRNAs (e.g., siMDH1-1: 5'-GCAUGAAGCUCAUCGAGUA-3')
✓ Spatiotemporal analysis using compartment-specific antibodies
Pre-absorb antibody with MDH2 recombinant protein (50 μg/mL, 1hr)
Compare signal in MDH1-KO vs WT cell lines (CRISPR validation preferred)
Use secondary antibody with minimal cross-reactivity (e.g., anti-goat HRP pre-adsorbed)
| Molecular Weight | Likely Cross-Reactivity | Solution | Source |
|---|---|---|---|
| 72 kDa | MDH dimer | Add fresh DTT (50mM) | |
| 42 kDa | LDH isoforms | Increase blocking time |
| Application | Compatible Markers | Signal Separation Method |
|---|---|---|
| Co-IP | GAPDH, HK2 | Sequential elution (pH gradient) |
| Multiplex IHC | GLUT1, ATP5A | Opal™ 7-color system |
| Metabolic imaging | NAD(P)H autofluorescence | FLIM (τ-phasor analysis) |