At3g47520 Antibody

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Description

Introduction to At3g47520 Antibody

The At3g47520 antibody targets the plastidial NAD-dependent malate dehydrogenase enzyme, which facilitates the reversible oxidation of malate to oxaloacetate. This enzyme is essential for photorespiration, redox balance, and metabolite shuttling between chloroplasts and mitochondria . The antibody enables researchers to investigate the protein's expression, localization, and functional roles in Arabidopsis mutants.

Development and Validation

The antibody was generated as part of a large-scale effort to create immunocytochemistry-grade tools for Arabidopsis proteins . Key steps include:

Immunogen Design

  • Antigen: Recombinant malate dehydrogenase protein derived from the At3g47520 gene .

  • Host Species: Rabbit .

Affinity Purification

Crude antisera were affinity-purified using recombinant malate dehydrogenase to enhance specificity. This process increased the detection success rate from 0% (crude sera) to 55% (purified antibodies) .

Validation Methods

MethodResult
Western blotDetected a single band of ~35 kDa (expected size) in wild-type plants .
ImmunolocalizationLocalized to chloroplasts in root and shoot tissues .
Mutant specificityNo signal observed in At3g47520 knockout mutants .

Metabolic Pathway Analysis

The antibody has been used to study malate dehydrogenase's role in:

  • Citrate cycle: Catalyzing malate/oxaloacetate interconversion .

  • Photorespiration: Balancing redox equivalents during high light stress .

Functional Studies in Mutants

  • Lethality of Null Alleles: Homozygous At3g47520 CRISPR mutants are embryonic lethal, underscoring the enzyme's essential role .

  • Phenotypic Suppression: Partial At3g47520 mutations (e.g., som410, som430) suppress cell death in the mod1 mutant, linked to altered mitochondrial retrograde signaling .

Technical Challenges and Solutions

  • Low Detection Sensitivity: Initial crude antisera failed in immunolocalization. Affinity purification resolved this .

  • Cross-Reactivity: Antibodies were validated against knockout mutants to confirm specificity .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
At3g47520 antibody; F1P2.70 antibody; Malate dehydrogenase antibody; chloroplastic antibody; EC 1.1.1.37 antibody; Chloroplastic malate dehydrogenase antibody; Chloroplastic MDH antibody; cpNAD-MDH antibody; Plastidic NAD-dependent malate dehydrogenase antibody; pNAD-MDH antibody
Target Names
At3g47520
Uniprot No.

Target Background

Function
This antibody targets At3g47520, which catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments. This enzyme is likely to play a key role in the metabolism of dark chloroplasts and non-green plastids. It is essential for embryo viability and plays a crucial role in heterotrophic metabolism in embryos and autotrophic metabolism in photosynthetic tissues.
Gene References Into Functions
  1. Purification and characterization of the plastid-localized NAD-dependent malate dehydrogenase from Arabidopsis thaliana PMID: 26095832
  2. The critical role of plastidial NAD-specific MDH isoform in Arabidopsis (Arabidopsis thaliana) plants has been reported. PMID: 24453164
  3. Arabidopsis thaliana mutants lacking the NADP-malate dehydrogenase have lost the reversible inactivation of catalase activity and the increase in H2O2 levels when exposed to high light. PMID: 24591715
  4. Plastid-localized NAD-dependent malate dehydrogenase is crucial for energy homeostasis in developing Arabidopsis thaliana seeds PMID: 24198233
  5. mMDH plays a role in maximizing photorespiratory rate. PMID: 20876337

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Database Links

KEGG: ath:AT3G47520

STRING: 3702.AT3G47520.1

UniGene: At.20474

Protein Families
LDH/MDH superfamily, MDH type 1 family
Subcellular Location
Plastid, chloroplast stroma.
Tissue Specificity
Expressed in rosette leaves. Expressed in meristematic regions of roots and shoots, cotyledons, young leaves, trichomes, stamen, pollen, tapetum, gynoecium and ovules.

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