Here’s a structured collection of research-focused FAQs for "MUB2 Antibody," incorporating methodological guidance and empirical findings from academic literature:
Perform surface plasmon resonance (SPR) to measure binding kinetics (KD, kon/koff) against HER family members (EGFR, HER3, HER4) .
Use knockout models (e.g., CRISPR-edited HER2-/- cells) to isolate off-target effects .
Validate findings with phosphoproteomics to identify unintended signaling pathway activation .
| Receptor | SPR KD (nM) | Cell-Based Binding | Functional Impact |
|---|---|---|---|
| HER2 | 0.15 | Yes | Growth inhibition |
| EGFR | 450 | No | None observed |
Epitope mapping: Identify critical binding residues via alanine scanning mutagenesis .
Combinatorial therapy: Pair MUB2 with PI3K/mTOR inhibitors to overcome HER2-downstream signaling bypass .
Bispecific engineering: Design MUB2-CD3 bispecific antibodies to engage T cells against low HER2-expressing variants .
Affinity modulation: Use yeast display libraries to reduce HER2 binding affinity to 1–10 nM (optimal for BBB transit) .
Fc engineering: Introduce LS mutations (M428L/N434S) to enhance FcRn-mediated transcytosis .
In vivo validation: Quantify brain tumor burden via bioluminescence imaging in MDA-MB-231-BR models .
| Tool | Application | Output |
|---|---|---|
| RosettaAntibodyDesign | CDR optimization | Energy-minimized paratope models |
| ABodyBuilder | Structural homology modeling | 3D antibody-antigen complexes |
| proABC | Binding affinity prediction | Probability of epitope recognition |
Library generation: Immunize mice with recombinant HER2 extracellular domain + CpG adjuvant.
Primary screening:
ELISA against HER2 (prioritize clones with OD450 > 2.0).
Flow cytometry on HER2+ vs. HER2- cells (select clones with >10-fold signal ratio).
Secondary validation:
Western blot (confirm ~185 kDa HER2 band recognition).
Immunofluorescence in patient-derived organoids.